Rmu_co8334191.1_g000001

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8334191.1
OG0008485
Physical Location & Seq
Reverse (-)
2 .. 952
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8334191.1_g000001.1.cds

Sequence Viewer

Length: 498 bp
atggggatatgtcaaccggatacttgggcagccatctttgattcgagaatcatccattgcaagatttccagtacagcagctgcaccttctggtcccctgaagaatggtcttggaaatattgttctccatccttcgttgcagaggagaatagaacaactcgctcgagctacagcaaacactaaggctcatcaggcaccctttcgcaacatgatgttttatggcccccctggtactggcaaaaccatggttgcaagggaaatagctcgaaaatcgggtttggattatgctatgatgactggaggagatgttgcacccttgggtgcacaggctgttactaaaatccatcagatatttgattgggcaaaaaaatcaaacaaaggtctactactcttcattgatgaggcagatgcattcctatgcgagcgtaacagcacacatatgagcgaatctcagcggagtgctctaaatgcattgctgttccgaactggagatcagtcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF3523

Protein Analysis

166

Amino Acids

18.06

Weight (kDa)

9.51

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 382
AciI CCGC 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 2 cut(s) 73, 232
AfiI CCNNNNNNNGG 1 cut(s) 233
AjnI CCWGG 1 cut(s) 226
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 3 cut(s) 80, 167, 263
AluI AGCT 3 cut(s) 80, 167, 263
Alw21I GWGCWC 2 cut(s) 325, 463
Alw44I GTGCAC 1 cut(s) 321
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 1 cut(s) 220
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 3 cut(s) 29, 77, 80
AspS9I GGNCC 2 cut(s) 92, 221
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 325, 463
BbvI GCAGC 3 cut(s) 41, 67, 89
BccI CCATC 3 cut(s) 41, 135, 351
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 1 cut(s) 13
BfmI CTRYAG 1 cut(s) 168
BfuI GTATCC 1 cut(s) 13
BisI GCNGC 3 cut(s) 30, 78, 81
BlsI GCNGC 3 cut(s) 31, 79, 82
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 92, 221
BmiI GGNNCC 3 cut(s) 94, 195, 223
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 397
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpmI CTGGAG 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 226, 243, 315
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 4 cut(s) 69, 238, 301, 490
Bse3DI GCAATG 2 cut(s) 55, 470
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 226, 243, 315
BseGI GGATG 2 cut(s) 51, 127
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 2 cut(s) 55, 470
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 4 cut(s) 69, 238, 301, 490
BseRI GAGGAG 2 cut(s) 157, 315
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 3 cut(s) 41, 67, 89
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 325, 463
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 325, 463
Bsp143I GATC 1 cut(s) 490
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 1 cut(s) 454
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 94, 195, 223
BspT107I GGYRCC 1 cut(s) 193
BsrDI GCAATG 2 cut(s) 55, 470
BsrI ACTGG 4 cut(s) 69, 238, 301, 490
BssECI CCNNGG 3 cut(s) 226, 243, 315
BssMI GATC 1 cut(s) 490
BssT1I CCWWGG 2 cut(s) 243, 315
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 2 cut(s) 180, 450
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 51, 127
BstKTI GATC 1 cut(s) 493
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 2 cut(s) 191, 467
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 3 cut(s) 41, 67, 89
BsuI GTATCC 1 cut(s) 13
BsuRI GGCC 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 51, 127
Cac8I GCNNGC 1 cut(s) 422
CaiI CAGNNNCTG 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 92, 221
Csp6I GTAC 2 cut(s) 72, 231
CviAII CATG 2 cut(s) 208, 244
CviJI RGCY 7 cut(s) 32, 80, 167, 185, 222, 263, 329
CviKI_1 RGCY 7 cut(s) 32, 80, 167, 185, 222, 263, 329
CviQI GTAC 2 cut(s) 72, 231
DdeI CTNAG 2 cut(s) 180, 450
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 243, 315
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 243, 315
EcoT22I ATGCAT 2 cut(s) 412, 472
ErhI CCWWGG 2 cut(s) 243, 315
FaeI CATG 2 cut(s) 211, 247
FaiI YATR 9 cut(s) 10, 209, 219, 245, 285, 290, 418, 438, 440
FaqI GGGAC 1 cut(s) 78
FatI CATG 2 cut(s) 207, 243
FauNDI CATATG 1 cut(s) 438
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 30, 78, 81
FokI GGATG 2 cut(s) 38, 114
Fsp4HI GCNGC 3 cut(s) 30, 78, 81
GluI GCNGC 3 cut(s) 30, 78, 81
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 17
Hin1II CATG 2 cut(s) 211, 247
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HinfI GANTC 3 cut(s) 41, 48, 446
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 14, 323, 383
Hpy188I TCNGA 2 cut(s) 348, 482
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 3 cut(s) 14, 323, 383
HpyAV CCTTC 2 cut(s) 96, 141
HpyCH4V TGCA 8 cut(s) 60, 83, 139, 251, 311, 323, 410, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 467
HpyF3I CTNAG 2 cut(s) 180, 450
Hsp92II CATG 2 cut(s) 211, 247
Kzo9I GATC 1 cut(s) 490
Lsp1109I GCAGC 3 cut(s) 41, 67, 89
LweI GCATC 1 cut(s) 397
MaeIII GTNAC 2 cut(s) 331, 425
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 2 cut(s) 112, 382
MhlI GDGCHC 2 cut(s) 325, 463
MnlI CCTC 3 cut(s) 135, 293, 394
Mph1103I ATGCAT 2 cut(s) 412, 472
MslI CAYNNNNRTG 2 cut(s) 415, 437
MspA1I CMGCKG 2 cut(s) 80, 454
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 191, 467
NcoI CCATGG 1 cut(s) 243
NdeI CATATG 1 cut(s) 438
NdeII GATC 1 cut(s) 490
NlaIII CATG 2 cut(s) 211, 247
NlaIV GGNNCC 3 cut(s) 94, 195, 223
NsiI ATGCAT 2 cut(s) 412, 472
PaeR7I CTCGAG 1 cut(s) 162
PctI GAATGC 1 cut(s) 410
PfeI GAWTC 3 cut(s) 41, 48, 446
PkrI GCNGC 3 cut(s) 31, 79, 82
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 94, 195, 223
PspPI GGNCC 2 cut(s) 92, 221
PspXI VCTCGAGB 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 73, 232
RsaNI GTAC 2 cut(s) 72, 231
RseI CAYNNNNRTG 2 cut(s) 415, 437
SatI GCNGC 3 cut(s) 30, 78, 81
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 2 cut(s) 92, 221
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 2 cut(s) 325, 463
SetI ASST 5 cut(s) 82, 88, 169, 265, 382
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 162
SmiMI CAYNNNNRTG 2 cut(s) 415, 437
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SsiI CCGC 1 cut(s) 454
SspI AATATT 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 2 cut(s) 243, 315
TaqI TCGA 3 cut(s) 44, 163, 265
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 3 cut(s) 41, 48, 446
TseI GCWGC 3 cut(s) 29, 77, 80
TspDTI ATGAA 1 cut(s) 382
VneI GTGCAC 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 382
Zsp2I ATGCAT 2 cut(s) 412, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.