Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008485

Physical Location & Seq

Genomic Coordinates Reverse (-)

79720543 .. 79725299

Gene Structure 4757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGGCGGCCTCGAAACTGTCTTCGTGCTTAGCAATGGCTATTGCGGCGGCCGCTATGCCGACGCTCTCCACACGCGCCTACGCCGACGGCGGCGGCTTTCGCTTTTCTCCGTTCTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCGGCCTCGAAGGACCCAAGTTCGGGTGGGAAGCCGGAATATGAAGCCGAAGAGCCAAGAGGGTCCGGGATGGACCCAGAGGCTTTAGAAAGAGCTGCCAAAGCTCTCAGAGAAATCAATAGCTCTAAGAACTCCAAGCAGATTTTTGACATGATGAGGAAGCAGGAACAAACTCGCCAGACTGAGTTGTCTGCTGAGAAGGCTCATTTTCAAGCTCAGCAATCTCATGCCGACATTGAAAGGCAGAGGAAATTGGCTGAAGAACAAAGAAATCTTGTACAGCAAGACGCGCAGCGAAAGGCACAAGTTATGCGATACGAAGATGAACTGGCCAGGAAAAGAATGCAGACAGATCATGAAACCCAGAGGCAGCATAATATTGAGTTGGTTAGGATGCAAGAGGAGTCCTCTATGAGGAAAGAGCGAGCAAGACAGGCTACTGAGGAACAGATCCAAGCTCAGCAGCGTCAGACCGAAAAAGAGAGAGCTGAACTAGAAAGAGAAACCATAAGAGTGAAGGCCATAGCAGAGGCAGAAGGTCGGGCCCATGAAGCAAAATTGACTGAGGACCAAAACAGGAGAATGCTTATCGAACGGATGAATGGTGAAAAGGAAAAATGGCTTGCTGCAATAAATACAGCTTTCAGTCACATTGAAGGGGGTTTTAGAACTTTACTGACTGATAGGAATAAATTGGTTATGACCGTTGGAGGTGCCACAGCATTGGCTGCAGGTGTTTATACAACTAGAGAAGGTTCTAGGGTTATATGGGGTTATGTCAACCGGATACTTGGGCAGCCATCTTTGATTCGAGAATCATCCATTGCAAGATTTCCAGGTTCAGAGATAATTTCTCAAGCAAAGAATAAAGTTTTAAATTATAGTACAGCTGCTGCAGCTTCTGGTCCCCTGAAGAATGGTCTTGGAAATATTGTTCTCCATCCTTCATTGCAGAGGAGAATAGAACAACTCGCTCGAGCTACAGCAAACACTAAGGCTCATCAGGCACCCTTTCGCAACATGATGTTTTATGGCCCCCCTGGTACTGGCAAAACCATGGTTGCAAGGGAAATAGCTCGAAAATCGGGTTTGGATTATGCTATGATGACCGGAGGAGATGTTGCACCCTTGGGTGCACAGGCTGTTACTAAAATCCATCAGATATTTGATTGGGCAAAAAAATCAAACAAAGGTCTACTACTCTTCATTGATGAGGCAGATGCATTCCTATGCGAGCGTAACAGCACACATATGAGCGAATCTCAGCGGAGTGCTCTAAATGCATTGCTGTTCCGAACTGGAGATCAATCAAGAGACATAGTTCTTGTGCTTGCTACAAACAGGCCAAGTGATCTTGACAGTGCTATCACTGACCGCATAGATGAAGTGATTGAGTTCCCACTTCCTGGAGAGGAGGAGCGATTTAAGTTATTGAAACTCTATTTGAACAAGTATCTTTCTGGTGAAGAGAACACCTCTAAGTGGGGCTCTCTGTACAAGAAGCAGCCACAAAAGATAACAATGAAGGATCTGTCCGATGATGTGATCCGACAGGCTGCCCGGAAGACAGAAGGGTTCTCTGGCCGCGAGATTGCTAAACTCATGGCTGGTGTTCAAGCAGCTGTGTACGGGCGCCCAGATTGTGTATTGGATTCCCAATTGTTTGTGGAGATTGTAGATTACAAAGTTGCAGAGCACCACCAGAGGATAAAACTAGCAGCTGAAGGTGGTGATGGGATTTTTGGCCTGACGAGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA DUF3523

Protein Analysis

636

Amino Acids

70.7

Weight (kDa)

9.12

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATAD3_N	PF12037	61 - 321	4.2e-104	ATPase family AAA domain-containing protein 3, N-terminal
AAA	PF00004	391 - 518	4.4e-28	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18330 AT4G36580
fragaria_vesca	FvH4_1g13120 FvH4_1g13120 FvH4_1g13120
malus_domestica	MD02G1145900.v1.1 MD15G1260100.v1.1
prunus_persica	Prupe.7G156000_v2.0.a1 Prupe.7G156000_v2.0.a1
pyrus_communis	pycom02g11540 pycom02g11550 pycom15g22750
rosa_chinensis	RchiOBHm_Chr2g0101291
rosa_laevigata	RLG00000017067
rosa_multiflora	Rmu_co8334191.1_g000001 Rmu_sc0006128.1_g000022
rosa_roxburghii	Rroxscaffold_2G00141430
rosa_rugosa	Rorug02G0099300
rosa_samantha	Rh2AG145800 Rh2BG151200 Rh2CG151700 Rh2DG151300
rosa_wichuraiana	Rw2G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	872
AasI	GACNNNNNNGTC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	872
AccB1I	GGYRCC	3 cut(s)	863, 1156, 1782
AccB7I	CCANNNNNTGG	1 cut(s)	1556
AccI	GTMKAC	1 cut(s)	1345
AccII	CGCG	3 cut(s)	75, 440, 1737
AciI	CCGC	9 cut(s)	5, 44, 47, 51, 90, 93, 1417, 1525, 1735
AclWI	GGATC	3 cut(s)	595, 1686, 1690
AcoI	YGGCCR	3 cut(s)	48, 480, 1732
AcuI	CTGAAG	3 cut(s)	429, 1082, 1893
AcyI	GRCGYC	1 cut(s)	1783
AfaI	GTAC	5 cut(s)	429, 1036, 1195, 1646, 1778
AfiI	CCNNNNNNNGG	6 cut(s)	172, 173, 564, 1196, 1556, 1632
AgsI	TTSAA	6 cut(s)	362, 389, 806, 1585, 1597, 1766
AjnI	CCWGG	4 cut(s)	482, 985, 1189, 1555
AloI	GAACNNNNNNTCC	2 cut(s)	1068, 1100
Alw21I	GWGCWC	3 cut(s)	1288, 1426, 1848
Alw26I	GTCTC	1 cut(s)	1458
Alw44I	GTGCAC	1 cut(s)	1284
AlwI	GGATC	3 cut(s)	595, 1686, 1690
AlwNI	CAGNNNCTG	2 cut(s)	1043, 1052
Ama87I	CYCGRG	1 cut(s)	1125
ApaI	GGGCCC	1 cut(s)	697
ApaLI	GTGCAC	1 cut(s)	1284
AspLEI	GCGC	3 cut(s)	77, 442, 1785
AspS9I	GGNCC	8 cut(s)	163, 213, 223, 693, 694, 718, 1055, 1184
AsuC2I	CCSGG	2 cut(s)	217, 1711
AsuHPI	GGTGA	3 cut(s)	767, 1625, 1892
AvaI	CYCGRG	1 cut(s)	1125
AvaII	GGWCC	5 cut(s)	163, 213, 223, 718, 1055
BaeGI	GKGCMC	2 cut(s)	697, 1288
BalI	TGGCCA	1 cut(s)	482
BanI	GGYRCC	3 cut(s)	863, 1156, 1782
BanII	GRGCYC	2 cut(s)	697, 1640
BbsI	GAAGAC	3 cut(s)	12, 111, 1721
Bbv12I	GWGCWC	3 cut(s)	1288, 1426, 1848
BccI	CCATC	5 cut(s)	214, 958, 1098, 1314, 1877
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	4 cut(s)	484, 987, 1191, 1557
BciVI	GTATCC	1 cut(s)	930
BcnI	CCSGG	2 cut(s)	217, 1711
BcoDI	GTCTC	1 cut(s)	1458
BfaI	CTAG	4 cut(s)	644, 897, 909, 1865
BfmI	CTRYAG	3 cut(s)	879, 1044, 1131
BfoI	RGCGCY	1 cut(s)	1786
BfuAI	ACCTGC	1 cut(s)	872
BfuI	GTATCC	1 cut(s)	930
BlpI	GCTNAGC	3 cut(s)	28, 366, 609
Bme1390I	CCNGG	6 cut(s)	217, 484, 987, 1191, 1557, 1711
Bme18I	GGWCC	5 cut(s)	163, 213, 223, 718, 1055
BmeT110I	CYCGRG	1 cut(s)	1125
BmgT120I	GGNCC	8 cut(s)	163, 213, 223, 693, 694, 718, 1055, 1184
BmiI	GGNNCC	9 cut(s)	165, 214, 225, 695, 865, 1057, 1158, 1186, 1784
BmrFI	CCNGG	6 cut(s)	217, 484, 987, 1191, 1557, 1711
BmsI	GCATC	2 cut(s)	534, 1360
BpiI	GAAGAC	3 cut(s)	12, 111, 1721
BplI	GAGNNNNNCTC	6 cut(s)	542, 574, 1396, 1428, 1610, 1642
BpmI	CTGGAG	2 cut(s)	1470, 1578
Bpu1102I	GCTNAGC	3 cut(s)	28, 366, 609
BpuEI	CTTGAG	1 cut(s)	990
BpuMI	CCSGG	2 cut(s)	217, 1711
BsaHI	GRCGYC	1 cut(s)	1783
BsaJI	CCNNGG	3 cut(s)	1189, 1206, 1278
BsaWI	WCCGGW	2 cut(s)	933, 1259
BsaXI	ACNNNNNCTCC	2 cut(s)	1254, 1284
Bsc4I	CCNNNNNNNGG	6 cut(s)	172, 173, 564, 1196, 1556, 1632
Bse1I	ACTGG	3 cut(s)	483, 1201, 1453
Bse3DI	GCAATG	4 cut(s)	39, 972, 1097, 1433
BseBI	CCWGG	4 cut(s)	484, 987, 1191, 1557
BseDI	CCNNGG	3 cut(s)	1189, 1206, 1278
BseGI	GGATG	5 cut(s)	225, 549, 753, 968, 1090
BseLI	CCNNNNNNNGG	6 cut(s)	172, 173, 564, 1196, 1556, 1632
BseMI	GCAATG	4 cut(s)	39, 972, 1097, 1433
BseMII	CTCAG	8 cut(s)	271, 324, 336, 380, 582, 623, 705, 1427
BseNI	ACTGG	3 cut(s)	483, 1201, 1453
BseRI	GAGGAG	5 cut(s)	566, 1120, 1278, 1577, 1580
BseSI	GKGCMC	2 cut(s)	697, 1288
BseX3I	CGGCCG	1 cut(s)	48
Bsh1236I	CGCG	3 cut(s)	75, 440, 1737
Bsh1285I	CGRYCG	1 cut(s)	51
BshNI	GGYRCC	3 cut(s)	863, 1156, 1782
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	3 cut(s)	1288, 1426, 1848
BsiHKCI	CYCGRG	1 cut(s)	1125
BsiSI	CCGG	5 cut(s)	185, 216, 934, 1260, 1711
BslFI	GGGAC	1 cut(s)	1041
BslI	CCNNNNNNNGG	6 cut(s)	172, 173, 564, 1196, 1556, 1632
BsmAI	GTCTC	1 cut(s)	1458
BsmFI	GGGAC	1 cut(s)	1041
BsmI	GAATGC	3 cut(s)	498, 738, 1373
BsoBI	CYCGRG	1 cut(s)	1125
Bsp120I	GGGCCC	1 cut(s)	693
Bsp1286I	GDGCHC	5 cut(s)	697, 1288, 1426, 1640, 1848
Bsp1407I	TGTACA	2 cut(s)	427, 1644
Bsp143I	GATC	6 cut(s)	502, 600, 1453, 1501, 1678, 1695
Bsp1720I	GCTNAGC	3 cut(s)	28, 366, 609
Bsp19I	CCATGG	1 cut(s)	1206
BspACI	CCGC	9 cut(s)	5, 44, 47, 51, 90, 93, 1417, 1525, 1735
BspCNI	CTCAG	8 cut(s)	270, 325, 337, 379, 583, 622, 706, 1426
BspFNI	CGCG	3 cut(s)	75, 440, 1737
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	9 cut(s)	165, 214, 225, 695, 865, 1057, 1158, 1186, 1784
BspMAI	CTGCAG	2 cut(s)	883, 1048
BspMI	ACCTGC	1 cut(s)	872
BspPI	GGATC	3 cut(s)	595, 1686, 1690
BspQI	GCTCTTC	1 cut(s)	195
BspT107I	GGYRCC	3 cut(s)	863, 1156, 1782
BsrDI	GCAATG	4 cut(s)	39, 972, 1097, 1433
BsrGI	TGTACA	2 cut(s)	427, 1644
BsrI	ACTGG	3 cut(s)	483, 1201, 1453
BssECI	CCNNGG	3 cut(s)	1189, 1206, 1278
BssMI	GATC	6 cut(s)	502, 600, 1453, 1501, 1678, 1695
BssNI	GRCGYC	1 cut(s)	1783
BssT1I	CCWWGG	2 cut(s)	1206, 1278
Bst2UI	CCWGG	4 cut(s)	484, 987, 1191, 1557
Bst4CI	ACNGT	3 cut(s)	18, 856, 1511
Bst6I	CTCTTC	3 cut(s)	195, 1358, 1611
BstACI	GRCGYC	1 cut(s)	1783
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstAUI	TGTACA	2 cut(s)	427, 1644
BstC8I	GCNNGC	4 cut(s)	576, 774, 1385, 1482
BstDSI	CCRYGG	1 cut(s)	1206
BstENI	CCTNNNNNAGG	1 cut(s)	562
BstF5I	GGATG	5 cut(s)	225, 549, 753, 968, 1090
BstFNI	CGCG	3 cut(s)	75, 440, 1737
BstH2I	RGCGCY	1 cut(s)	1786
BstHHI	GCGC	3 cut(s)	77, 442, 1785
BstKTI	GATC	6 cut(s)	505, 603, 1456, 1504, 1681, 1698
BstMAI	GTCTC	1 cut(s)	1458
BstMBI	GATC	6 cut(s)	502, 600, 1453, 1501, 1678, 1695
BstMCI	CGRYCG	1 cut(s)	51
BstNI	CCWGG	4 cut(s)	484, 987, 1191, 1557
BstSCI	CCNGG	6 cut(s)	215, 482, 985, 1189, 1555, 1709
BstSFI	CTRYAG	3 cut(s)	879, 1044, 1131
BstSLI	GKGCMC	2 cut(s)	697, 1288
BstUI	CGCG	3 cut(s)	75, 440, 1737
BstV2I	GAAGAC	3 cut(s)	12, 111, 1721
BstX2I	RGATCY	2 cut(s)	600, 1678
BstXI	CCANNNNNNTGG	1 cut(s)	874
BstYI	RGATCY	2 cut(s)	600, 1678
BstZI	CGGCCG	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	930
BtgI	CCRYGG	1 cut(s)	1206
BtsCI	GGATG	5 cut(s)	225, 549, 753, 968, 1090
BtsIMutI	CAGTG	2 cut(s)	1516, 1518
BveI	ACCTGC	1 cut(s)	872
Cac8I	GCNNGC	4 cut(s)	576, 774, 1385, 1482
CaiI	CAGNNNCTG	2 cut(s)	1043, 1052
CciI	TCATGA	1 cut(s)	505
CciNI	GCGGCCGC	1 cut(s)	48
CfoI	GCGC	3 cut(s)	77, 442, 1785
Cfr13I	GGNCC	8 cut(s)	163, 213, 223, 693, 694, 718, 1055, 1184
CseI	GACGC	3 cut(s)	70, 446, 605
Csp6I	GTAC	5 cut(s)	428, 1035, 1194, 1645, 1777
CviAII	CATG	7 cut(s)	301, 377, 506, 698, 1171, 1207, 1753
CviQI	GTAC	5 cut(s)	428, 1035, 1194, 1645, 1777
DinI	GGCGCC	1 cut(s)	1784
DpnI	GATC	6 cut(s)	504, 602, 1455, 1503, 1680, 1697
DpnII	GATC	6 cut(s)	502, 600, 1453, 1501, 1678, 1695
DraI	TTTAAA	1 cut(s)	1026
DrdI	GACNNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	337
EaeI	YGGCCR	3 cut(s)	48, 480, 1732
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	3 cut(s)	195, 1358, 1611
EarI	CTCTTC	3 cut(s)	195, 1358, 1611
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	1206, 1278
Eco24I	GRGCYC	2 cut(s)	697, 1640
Eco47I	GGWCC	5 cut(s)	163, 213, 223, 718, 1055
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	3 cut(s)	429, 1082, 1893
Eco88I	CYCGRG	1 cut(s)	1125
EcoNI	CCTNNNNNAGG	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	4 cut(s)	482, 985, 1189, 1555
EcoT14I	CCWWGG	2 cut(s)	1206, 1278
EcoT22I	ATGCAT	2 cut(s)	1375, 1435
EcoT38I	GRGCYC	2 cut(s)	697, 1640
EgeI	GGCGCC	1 cut(s)	1784
EheI	GGCGCC	1 cut(s)	1784
ErhI	CCWWGG	2 cut(s)	1206, 1278
FaeI	CATG	7 cut(s)	304, 380, 509, 701, 1174, 1210, 1756
FaqI	GGGAC	1 cut(s)	1041
FatI	CATG	7 cut(s)	300, 376, 505, 697, 1170, 1206, 1752
FauNDI	CATATG	1 cut(s)	1401
FblI	GTMKAC	1 cut(s)	1345
FokI	GGATG	5 cut(s)	232, 556, 760, 955, 1077
FriOI	GRGCYC	2 cut(s)	697, 1640
FspBI	CTAG	4 cut(s)	644, 897, 909, 1865
GlaI	GCGC	3 cut(s)	76, 441, 1784
GsuI	CTGGAG	2 cut(s)	1470, 1578
HaeII	RGCGCY	1 cut(s)	1786
HapII	CCGG	5 cut(s)	185, 216, 934, 1260, 1711
HgaI	GACGC	3 cut(s)	70, 446, 605
HhaI	GCGC	3 cut(s)	77, 442, 1785
Hin1I	GRCGYC	1 cut(s)	1783
Hin1II	CATG	7 cut(s)	304, 380, 509, 701, 1174, 1210, 1756
Hin6I	GCGC	3 cut(s)	75, 440, 1783
HinP1I	GCGC	3 cut(s)	75, 440, 1783
HincII	GTYRAC	1 cut(s)	931
HindII	GTYRAC	1 cut(s)	931
HinfI	GANTC	5 cut(s)	554, 958, 965, 1409, 1802
HpaII	CCGG	5 cut(s)	185, 216, 934, 1260, 1711
HphI	GGTGA	3 cut(s)	767, 1625, 1892
Hpy166II	GTNNAC	4 cut(s)	931, 1286, 1346, 1777
Hpy188I	TCNGA	7 cut(s)	260, 621, 994, 1311, 1445, 1687, 1700
Hpy188III	TCNNGA	4 cut(s)	506, 962, 1461, 1505
Hpy8I	GTNNAC	4 cut(s)	931, 1286, 1346, 1777
Hpy99I	CGWCG	2 cut(s)	64, 89
HpyCH4III	ACNGT	3 cut(s)	18, 856, 1511
Hsp92I	GRCGYC	1 cut(s)	1783
Hsp92II	CATG	7 cut(s)	304, 380, 509, 701, 1174, 1210, 1756
HspAI	GCGC	3 cut(s)	75, 440, 1783
KasI	GGCGCC	1 cut(s)	1782
Kzo9I	GATC	6 cut(s)	502, 600, 1453, 1501, 1678, 1695
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	1567
LweI	GCATC	2 cut(s)	534, 1360
MaeI	CTAG	4 cut(s)	644, 897, 909, 1865
MaeIII	GTNAC	3 cut(s)	797, 1294, 1388
MalI	GATC	6 cut(s)	504, 602, 1455, 1503, 1680, 1697
MboI	GATC	6 cut(s)	502, 600, 1453, 1501, 1678, 1695
MfeI	CAATTG	1 cut(s)	1808
MflI	RGATCY	2 cut(s)	600, 1678
MhlI	GDGCHC	5 cut(s)	697, 1288, 1426, 1640, 1848
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	6 cut(s)	401, 707, 842, 999, 1027, 1808
MluNI	TGGCCA	1 cut(s)	482
Mly113I	GGCGCC	1 cut(s)	1783
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	2 cut(s)	838, 1723
Mox20I	TGGCCA	1 cut(s)	482
Mph1103I	ATGCAT	2 cut(s)	1375, 1435
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	2 cut(s)	1025, 1575
MslI	CAYNNNNRTG	3 cut(s)	662, 1378, 1400
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	4 cut(s)	1040, 1417, 1772, 1871
MspI	CCGG	5 cut(s)	185, 216, 934, 1260, 1711
MspR9I	CCNGG	6 cut(s)	217, 484, 987, 1191, 1557, 1711
MunI	CAATTG	1 cut(s)	1808
Mva1269I	GAATGC	3 cut(s)	498, 738, 1373
MvaI	CCWGG	4 cut(s)	484, 987, 1191, 1557
MvnI	CGCG	3 cut(s)	75, 440, 1737
NarI	GGCGCC	1 cut(s)	1783
NciI	CCSGG	2 cut(s)	217, 1711
NcoI	CCATGG	1 cut(s)	1206
NdeI	CATATG	1 cut(s)	1401
NdeII	GATC	6 cut(s)	502, 600, 1453, 1501, 1678, 1695
NlaIII	CATG	7 cut(s)	304, 380, 509, 701, 1174, 1210, 1756
NlaIV	GGNNCC	9 cut(s)	165, 214, 225, 695, 865, 1057, 1158, 1186, 1784
NmuCI	GTSAC	1 cut(s)	797
NotI	GCGGCCGC	1 cut(s)	48
NsiI	ATGCAT	2 cut(s)	1375, 1435
PaeR7I	CTCGAG	1 cut(s)	1125
PagI	TCATGA	1 cut(s)	505
PaqCI	CACCTGC	1 cut(s)	872
PciSI	GCTCTTC	1 cut(s)	195
PctI	GAATGC	3 cut(s)	498, 738, 1373
PfeI	GAWTC	4 cut(s)	958, 965, 1409, 1802
PflMI	CCANNNNNTGG	1 cut(s)	1556
PfoI	TCCNGGA	2 cut(s)	215, 1555
PleI	GAGTC	1 cut(s)	562
PluTI	GGCGCC	1 cut(s)	1786
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	4 cut(s)	482, 985, 1189, 1555
PspGI	CCWGG	4 cut(s)	482, 985, 1189, 1555
PspN4I	GGNNCC	9 cut(s)	165, 214, 225, 695, 865, 1057, 1158, 1186, 1784
PspOMI	GGGCCC	1 cut(s)	693
PspPI	GGNCC	8 cut(s)	163, 213, 223, 693, 694, 718, 1055, 1184
PspPPI	RGGWCCY	1 cut(s)	163
PspXI	VCTCGAGB	1 cut(s)	1125
PstI	CTGCAG	2 cut(s)	883, 1048
PstNI	CAGNNNCTG	2 cut(s)	1043, 1052
PsuI	RGATCY	2 cut(s)	600, 1678
PvuII	CAGCTG	3 cut(s)	1040, 1772, 1871
RsaI	GTAC	5 cut(s)	429, 1036, 1195, 1646, 1778
RsaNI	GTAC	5 cut(s)	428, 1035, 1194, 1645, 1777
RseI	CAYNNNNRTG	3 cut(s)	662, 1378, 1400
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	1025, 1575
Sau3AI	GATC	6 cut(s)	502, 600, 1453, 1501, 1678, 1695
Sau96I	GGNCC	8 cut(s)	163, 213, 223, 693, 694, 718, 1055, 1184
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	6 cut(s)	217, 484, 987, 1191, 1557, 1711
SduI	GDGCHC	5 cut(s)	697, 1288, 1426, 1640, 1848
SfaNI	GCATC	2 cut(s)	534, 1360
SfcI	CTRYAG	3 cut(s)	879, 1044, 1131
SfoI	GGCGCC	1 cut(s)	1784
Sfr274I	CTCGAG	1 cut(s)	1125
SinI	GGWCC	5 cut(s)	163, 213, 223, 718, 1055
SlaI	CTCGAG	1 cut(s)	1125
SmiMI	CAYNNNNRTG	3 cut(s)	662, 1378, 1400
SmlI	CTYRAG	2 cut(s)	1005, 1125
SmoI	CTYRAG	2 cut(s)	1005, 1125
Sse9I	AATT	6 cut(s)	401, 707, 842, 999, 1027, 1808
SsiI	CCGC	9 cut(s)	5, 44, 47, 51, 90, 93, 1417, 1525, 1735
SspDI	GGCGCC	1 cut(s)	1782
SspI	AATATT	2 cut(s)	529, 1081
SspMI	CTAG	4 cut(s)	644, 897, 909, 1865
StyD4I	CCNGG	6 cut(s)	215, 482, 985, 1189, 1555, 1709
StyI	CCWWGG	2 cut(s)	1206, 1278
TaaI	ACNGT	3 cut(s)	18, 856, 1511
TaqI	TCGA	6 cut(s)	11, 158, 741, 961, 1126, 1228
TaqII	GACCGA	1 cut(s)	638
TasI	AATT	6 cut(s)	401, 707, 842, 999, 1027, 1808
TatI	WGTACW	3 cut(s)	427, 1034, 1644
TauI	GCSGC	7 cut(s)	8, 47, 50, 53, 93, 96, 1737
TfiI	GAWTC	4 cut(s)	958, 965, 1409, 1802
Tru1I	TTAA	2 cut(s)	1025, 1575
Tru9I	TTAA	2 cut(s)	1025, 1575
TscAI	CASTG	2 cut(s)	1516, 1525
TseFI	GTSAC	1 cut(s)	797
Tsp45I	GTSAC	1 cut(s)	797
TspGWI	ACGGA	2 cut(s)	99, 760
TspRI	CASTG	2 cut(s)	1516, 1525
Van91I	CCANNNNNTGG	1 cut(s)	1556
VneI	GTGCAC	1 cut(s)	1284
VpaK11BI	GGWCC	5 cut(s)	163, 213, 223, 718, 1055
XagI	CCTNNNNNAGG	1 cut(s)	562
XhoI	CTCGAG	1 cut(s)	1125
XmiI	GTMKAC	1 cut(s)	1345
XspI	CTAG	4 cut(s)	644, 897, 909, 1865
Zsp2I	ATGCAT	2 cut(s)	1375, 1435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.