AT2G18410

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002825
Physical Location & Seq
Forward (+)
7990618 .. 7992774
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18410.2

Sequence Viewer

Length: 1125 bp
ATGGCGGAATCGATTTTCAGAAAGCTCAGAGATGGTGGCGAAGAAGGCGAACTCGCACCAGCTCTCACTATAGAAGAAACTGTAGCTTCCCCTTTCGGACTCGATGTCTCCGGCTATCTTCTCACAAATCTATCTTCTTCAATTTTAGCTGGAAAATCCTCGTCGCAGGGTCTTGTGTTGATCACATTCTCGCGGAGCCCTTCGTTCTATTTGCAATTGTTGAAGCAAAAAGGAATCGTTGTCTCTTCATCTTCTAAATGGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATCTTCAACTAGTTTTAGTGAAGGTTCAAGTTTGATTAAGTTACATAAGTGTGTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAGAGTTGGTTGGAACTGGGAAGACACGTTTCTGCGTTGCCATTGATTCGGTAAATGAGTTGCTAAGACATTCAGCGATGCCATTAGTTTCTGGTCTTTTAACAGATCTTCGAAGCCATGCGCAAATTTCCAGTGTCTTTTGGTCATTGAACACTGACCTTCACCAAGAGAAGGTCACAAATGCGCTTGAATATATATCCACAATGAAAGCGAACTTAGAACCTTTGTGTCCATCTTCAGATGGGCAAAGGAATGCTTTAGAAAACCTCTTTTCGGTTCATCAGGATTTCGGTAAAGGACGGTTTCATGTCCGGTTTAAGCTTAGAAAAGGACGTGTGAGAGTAATGTCTGAAGAATATCATGTTGATCAATCGGGGATAAACTTTTCACCCATTTCCTCTGTGGATACTGTTATTGCAGCCACTAAAAGCCTTTTGCCTAAGGTTCAATTCAATCTCCAGTTGTCTGAGAAAGAACGGGTCGAGAAAGAAAAAGTTGTGCTTCCTTTTGAGCACCAAGATGATGGAAAATCGAACGAGATCTATGATGGGAGGAGATCTCTTGTGGATGGCAAGATTGAGACAACACCATTGTCGTCAATGGAGTTGCAGACCGATGTGGTTTCGTCGGGTAAGGGTGGTGAGATTATATATTTCAGAGATTCAGACGATGAGCATCCTGATTCTGATGAAGATCCTGATGATGATTTGGACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

374

Amino Acids

41.43

Weight (kDa)

5.18

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 528
AccII CGCG 1 cut(s) 193
AciI CCGC 2 cut(s) 5, 193
AclWI GGATC 2 cut(s) 281, 1094
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 2 cut(s) 627, 777
AfiI CCNNNNNNNGG 2 cut(s) 577, 679
AflIII ACRYGT 2 cut(s) 431, 739
AhdI GACNNNNNGTC 1 cut(s) 104
AhlI ACTAGT 1 cut(s) 317
AjiI CACGTC 1 cut(s) 740
AluBI AGCT 6 cut(s) 25, 62, 86, 149, 379, 727
AluI AGCT 6 cut(s) 25, 62, 86, 149, 379, 727
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 3 cut(s) 112, 247, 980
AlwI GGATC 2 cut(s) 281, 1094
ApeKI GCWGC 1 cut(s) 824
ApoI RAATTY 1 cut(s) 531
AspLEI GCGC 2 cut(s) 529, 592
AsuHPI GGTGA 3 cut(s) 560, 786, 1058
AsuII TTCGAA 1 cut(s) 517
AxyI CCTNAGG 1 cut(s) 846
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 1 cut(s) 836
BccI CCATC 7 cut(s) 26, 291, 641, 646, 923, 947, 968
BciVI GTATCC 1 cut(s) 805
BclI TGATCA 3 cut(s) 180, 304, 772
BcoDI GTCTC 3 cut(s) 112, 247, 980
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 2 cut(s) 69, 81
BfuI GTATCC 1 cut(s) 805
BglII AGATCT 3 cut(s) 511, 945, 962
BisI GCNGC 1 cut(s) 825
BlsI GCNGC 1 cut(s) 826
BmeRI GACNNNNNGTC 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 740
BmiI GGNNCC 1 cut(s) 197
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 2 cut(s) 474, 1090
BmuI ACTGGG 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 434
BplI GAGNNNNNCTC 2 cut(s) 949, 981
BpmI CTGGAG 1 cut(s) 848
Bpu14I TTCGAA 1 cut(s) 517
Bsa29I ATCGAT 1 cut(s) 11
BsaBI GATNNNNATC 2 cut(s) 1080, 1098
BsaWI WCCGGW 1 cut(s) 717
Bsc4I CCNNNNNNNGG 2 cut(s) 577, 679
Bse1I ACTGG 3 cut(s) 427, 537, 865
Bse21I CCTNAGG 1 cut(s) 846
Bse8I GATNNNNATC 2 cut(s) 1080, 1098
BseCI ATCGAT 1 cut(s) 11
BseGI GGATG 3 cut(s) 302, 979, 1081
BseJI GATNNNNATC 2 cut(s) 1080, 1098
BseLI CCNNNNNNNGG 2 cut(s) 577, 679
BseMII CTCAG 2 cut(s) 40, 864
BseNI ACTGG 3 cut(s) 427, 537, 865
BseRI GAGGAG 1 cut(s) 973
BseXI GCAGC 1 cut(s) 836
Bsh1236I CGCG 1 cut(s) 193
BshVI ATCGAT 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 921
BsiSI CCGG 2 cut(s) 111, 718
BslI CCNNNNNNNGG 2 cut(s) 577, 679
BsmAI GTCTC 3 cut(s) 112, 247, 980
BsmI GAATGC 1 cut(s) 664
Bsp119I TTCGAA 1 cut(s) 517
Bsp1286I GDGCHC 2 cut(s) 200, 921
Bsp143I GATC 8 cut(s) 180, 286, 304, 511, 772, 945, 962, 1099
BspACI CCGC 2 cut(s) 5, 193
BspCNI CTCAG 2 cut(s) 39, 865
BspDI ATCGAT 1 cut(s) 11
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 2 cut(s) 281, 1094
BspT104I TTCGAA 1 cut(s) 517
BsrI ACTGG 3 cut(s) 427, 537, 865
BssMI GATC 8 cut(s) 180, 286, 304, 511, 772, 945, 962, 1099
Bst4CI ACNGT 3 cut(s) 82, 708, 817
Bst6I CTCTTC 2 cut(s) 250, 400
BstBI TTCGAA 1 cut(s) 517
BstDEI CTNAG 6 cut(s) 26, 470, 622, 728, 846, 873
BstF5I GGATG 3 cut(s) 302, 979, 1081
BstFNI CGCG 1 cut(s) 193
BstHHI GCGC 2 cut(s) 529, 592
BstKTI GATC 8 cut(s) 183, 289, 307, 514, 775, 948, 965, 1102
BstMAI GTCTC 3 cut(s) 112, 247, 980
BstMBI GATC 8 cut(s) 180, 286, 304, 511, 772, 945, 962, 1099
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstSFI CTRYAG 2 cut(s) 69, 81
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 836
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 4 cut(s) 511, 945, 962, 1099
BstXI CCANNNNNNTGG 2 cut(s) 297, 929
BstYI RGATCY 4 cut(s) 511, 945, 962, 1099
Bsu15I ATCGAT 1 cut(s) 11
Bsu36I CCTNAGG 1 cut(s) 846
BsuI GTATCC 1 cut(s) 805
BsuTUI ATCGAT 1 cut(s) 11
BtgZI GCGATG 1 cut(s) 497
BtrI CACGTC 1 cut(s) 740
BtsCI GGATG 3 cut(s) 302, 979, 1081
BtsIMutI CAGTG 3 cut(s) 282, 544, 558
CfoI GCGC 2 cut(s) 529, 592
ClaI ATCGAT 1 cut(s) 11
CviAII CATG 3 cut(s) 524, 713, 767
DdeI CTNAG 6 cut(s) 26, 470, 622, 728, 846, 873
DpnI GATC 8 cut(s) 182, 288, 306, 513, 774, 947, 964, 1101
DpnII GATC 8 cut(s) 180, 286, 304, 511, 772, 945, 962, 1099
DriI GACNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 250, 400
Eam1105I GACNNNNNGTC 1 cut(s) 104
EarI CTCTTC 2 cut(s) 250, 400
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 200
Eco57I CTGAAG 2 cut(s) 627, 777
Eco81I CCTNAGG 1 cut(s) 846
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 3 cut(s) 527, 716, 770
FalI AAGNNNNNCTT 4 cut(s) 646, 678, 891, 923
FatI CATG 3 cut(s) 523, 712, 766
FbaI TGATCA 3 cut(s) 180, 304, 772
Fnu4HI GCNGC 1 cut(s) 825
FokI GGATG 3 cut(s) 309, 986, 1068
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 825
FspBI CTAG 1 cut(s) 318
FspI TGCGCA 1 cut(s) 528
GlaI GCGC 2 cut(s) 528, 591
GluI GCNGC 1 cut(s) 825
GsuI CTGGAG 1 cut(s) 848
HapII CCGG 2 cut(s) 111, 718
HhaI GCGC 2 cut(s) 529, 592
Hin1II CATG 3 cut(s) 527, 716, 770
Hin6I GCGC 2 cut(s) 527, 590
HinP1I GCGC 2 cut(s) 527, 590
HindIII AAGCTT 2 cut(s) 377, 725
HinfI GANTC 7 cut(s) 8, 99, 234, 262, 452, 1067, 1088
HpaII CCGG 2 cut(s) 111, 718
HphI GGTGA 3 cut(s) 560, 786, 1058
Hpy188I TCNGA 9 cut(s) 20, 29, 98, 646, 757, 874, 1064, 1072, 1093
Hpy188III TCNNGA 4 cut(s) 689, 889, 1085, 1103
Hpy99I CGWCG 2 cut(s) 166, 1036
HpyAV CCTTC 5 cut(s) 38, 210, 323, 571, 575
HpyCH4III ACNGT 3 cut(s) 82, 708, 817
HpyCH4IV ACGT 2 cut(s) 433, 739
HpyCH4V TGCA 3 cut(s) 214, 824, 1015
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 6 cut(s) 26, 470, 622, 728, 846, 873
HpySE526I ACGT 2 cut(s) 433, 739
Hsp92II CATG 3 cut(s) 527, 716, 770
HspAI GCGC 2 cut(s) 527, 590
Ksp22I TGATCA 3 cut(s) 180, 304, 772
Kzo9I GATC 8 cut(s) 180, 286, 304, 511, 772, 945, 962, 1099
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 836
LweI GCATC 2 cut(s) 474, 1090
MaeI CTAG 1 cut(s) 318
MaeII ACGT 2 cut(s) 433, 739
MaeIII GTNAC 4 cut(s) 278, 348, 365, 580
MalI GATC 8 cut(s) 182, 288, 306, 513, 774, 947, 964, 1101
MboI GATC 8 cut(s) 180, 286, 304, 511, 772, 945, 962, 1099
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 4 cut(s) 511, 945, 962, 1099
MhlI GDGCHC 2 cut(s) 200, 921
MluCI AATT 4 cut(s) 141, 215, 531, 854
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 4 cut(s) 169, 683, 814, 951
MseI TTAA 4 cut(s) 345, 506, 723, 1123
MslI CAYNNNNRTG 3 cut(s) 295, 357, 924
MspI CCGG 2 cut(s) 111, 718
MunI CAATTG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 664
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 45
NdeII GATC 8 cut(s) 180, 286, 304, 511, 772, 945, 962, 1099
NlaIII CATG 3 cut(s) 527, 716, 770
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 2 cut(s) 365, 580
NsbI TGCGCA 1 cut(s) 528
NspV TTCGAA 1 cut(s) 517
PctI GAATGC 1 cut(s) 664
PfeI GAWTC 6 cut(s) 8, 234, 262, 452, 1067, 1088
PkrI GCNGC 1 cut(s) 826
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 4 cut(s) 511, 945, 962, 1099
RseI CAYNNNNRTG 3 cut(s) 295, 357, 924
SaqAI TTAA 4 cut(s) 345, 506, 723, 1123
SatI GCNGC 1 cut(s) 825
Sau3AI GATC 8 cut(s) 180, 286, 304, 511, 772, 945, 962, 1099
SchI GAGTC 1 cut(s) 93
SduI GDGCHC 2 cut(s) 200, 921
SfaNI GCATC 2 cut(s) 474, 1090
SfcI CTRYAG 2 cut(s) 69, 81
SfuI TTCGAA 1 cut(s) 517
SmiMI CAYNNNNRTG 3 cut(s) 295, 357, 924
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 4 cut(s) 141, 215, 531, 854
SsiI CCGC 2 cut(s) 5, 193
SspMI CTAG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 82, 708, 817
TaiI ACGT 2 cut(s) 436, 742
TaqI TCGA 5 cut(s) 11, 102, 517, 888, 938
TaqII GACCGA 1 cut(s) 1034
TasI AATT 4 cut(s) 141, 215, 531, 854
TfiI GAWTC 6 cut(s) 8, 234, 262, 452, 1067, 1088
Tru1I TTAA 4 cut(s) 345, 506, 723, 1123
Tru9I TTAA 4 cut(s) 345, 506, 723, 1123
TscAI CASTG 3 cut(s) 289, 544, 565
TseFI GTSAC 2 cut(s) 365, 580
TseI GCWGC 1 cut(s) 824
Tsp45I GTSAC 2 cut(s) 365, 580
TspDTI ATGAA 5 cut(s) 237, 626, 674, 701, 1110
TspRI CASTG 3 cut(s) 289, 544, 565
XapI RAATTY 1 cut(s) 531
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.