MD00G1149900.v1.1

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0002825
Physical Location & Seq
Reverse (-)
33090868 .. 33095483
4616 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1149900.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGGTTTGCAGAGCCCTTCGAGACGGTGCGTTGGAAGGCGAGCATGCACCTGCTCTCACAATCAAGGACTCAATAGTCTCACCTCTCGGCTTCCAAGTTTTTGGTCACGTCCTCTCCCAGCTCTCCACCAACATTTCAGCCGGAAAATCTCAGTCACGGTCGGTCTTGTGCTCGTCGCGTTTTCTCGGAGTCCGTTGTATTATGTGAATTTGTTGAAGAGGAGAGGACTCGATAATTCCTCTCAGCAACGGATTCAGATTTTGGATTGTTACACGGACCCTCTTGGATGGAGAGAAGGGCTCGTGGAGTGTGGAAGTGCGAAAAATCTCCCTCATGAAGTTTACAAAGCAGCTAGTGTTTGCAGGAATGTGAAGGATGTGGACACGTTGCTCTCTTCAATTATTTCACTTGGAGAAGGATTGGTTGGACAAGGGAAAGTTAGTTTCAGTGTTGCGATAGATTCGGTAAATGAAATGTCAAGGCATGCAACTTTGTCATCAGTTTCTGGCCTTTTAAACAACCTTCGCTGCTGTGAGCAAATTTCAAGCATCTTTTGGTTTTTCCATGCGGATCTTTGTGAAGAAAGGGTCGCTGCTGTTATTGAATACATGTCCTCTATGGTGGCCAGCATAGAACCATTAATCCCATTTACAAATGGACACAGAGGTAATTCAGAGAATCTTTCTTTAGCTGAACAGAATTTTACACAAGGGAAATTTCATGTCAGATGCAAACGTAGAAATGGACGTGTCCGAGTGATGTTTGAAGAAATTCATGTTGGGCAGTCGGGCATCAGCTTCACATCCCCTTCATCTGAAGATGGAGTAATCAATCAAGTCAATCAAGCCCTTTTGCCGAAGGTGCAATTCAATCTACAGCTGTCAGAGAAAGAGAAAAATGATAGGGCCAAGGTTGTACTTCCATTTGAACACCAAGGAAATGGTAAACCCGTACAAATTTATGATGGTCGAAAATCTCTGATGGATAGCAAATATGAGGCTGCACCTGCTTCAACTGTGAATCCAAACACCAATGACGAGTCTAGCAAGGGTGAAATAATATATTTTCGCGATTCAGAAGATGAGATGCCGGATTCTGATGAGGATCCTGATGATGATTTGGATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

377

Amino Acids

41.87

Weight (kDa)

6.22

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elong_Iki1 PF10483 146 - 309 2.6e-11 Elongator subunit Iki1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 59, 1015
AasI GACNNNNNNGTC 1 cut(s) 75
Acc36I ACCTGC 2 cut(s) 59, 1015
AccII CGCG 2 cut(s) 179, 1071
AciI CCGC 1 cut(s) 569
AclWI GGATC 3 cut(s) 579, 1100, 1113
AcoI YGGCCR 1 cut(s) 624
AcsI RAATTY 6 cut(s) 208, 540, 700, 716, 771, 957
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 2 cut(s) 918, 954
AflIII ACRYGT 3 cut(s) 384, 609, 748
AgsI TTSAA 8 cut(s) 217, 399, 546, 605, 767, 871, 929, 1014
AjiI CACGTC 2 cut(s) 110, 749
AjuI GAANNNNNNNTTGG 4 cut(s) 408, 440, 762, 794
AloI GAACNNNNNNTCC 2 cut(s) 627, 659
AluBI AGCT 5 cut(s) 122, 353, 692, 798, 880
AluI AGCT 5 cut(s) 122, 353, 692, 798, 880
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 16, 83
AlwI GGATC 3 cut(s) 579, 1100, 1113
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 3 cut(s) 508, 624, 906
ApeKI GCWGC 4 cut(s) 350, 528, 593, 1001
ApoI RAATTY 6 cut(s) 208, 540, 700, 716, 771, 957
AseI ATTAAT 1 cut(s) 641
Asp700I GAANNNNTTC 1 cut(s) 771
AspS9I GGNCC 2 cut(s) 277, 906
AsuHPI GGTGA 2 cut(s) 73, 1064
AvaII GGWCC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 626
BamHI GGATCC 1 cut(s) 1105
BanII GRGCYC 2 cut(s) 17, 303
BauI CACGAG 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 362, 515, 580, 988
BccI CCATC 4 cut(s) 282, 815, 959, 976
BcoDI GTCTC 2 cut(s) 16, 83
BfaI CTAG 2 cut(s) 354, 1044
BfmI CTRYAG 1 cut(s) 875
BfuAI ACCTGC 2 cut(s) 59, 1015
BisI GCNGC 4 cut(s) 351, 529, 594, 1002
BlsI GCNGC 4 cut(s) 352, 530, 595, 1003
Bme18I GGWCC 1 cut(s) 277
BmgBI CACGTC 2 cut(s) 110, 749
BmgT120I GGNCC 2 cut(s) 277, 906
BmiI GGNNCC 2 cut(s) 279, 1107
BmsI GCATC 4 cut(s) 558, 719, 801, 1077
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BsaBI GATNNNNATC 1 cut(s) 1104
BsaJI CCNNGG 2 cut(s) 909, 934
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bse8I GATNNNNATC 1 cut(s) 1104
BseDI CCNNGG 2 cut(s) 909, 934
BseGI GGATG 3 cut(s) 293, 382, 803
BseJI GATNNNNATC 1 cut(s) 1104
BseMII CTCAG 2 cut(s) 165, 257
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 4 cut(s) 362, 515, 580, 988
BseYI CCCAGC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 2 cut(s) 179, 1071
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 3 cut(s) 510, 626, 908
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 142, 1091
BsmAI GTCTC 2 cut(s) 16, 83
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 3 cut(s) 510, 626, 908
Bsp1286I GDGCHC 3 cut(s) 17, 174, 303
Bsp143I GATC 2 cut(s) 571, 1105
Bsp68I TCGCGA 1 cut(s) 1071
BspACI CCGC 1 cut(s) 569
BspANI GGCC 3 cut(s) 510, 626, 908
BspCNI CTCAG 2 cut(s) 164, 256
BspFNI CGCG 2 cut(s) 179, 1071
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 279, 1107
BspMI ACCTGC 2 cut(s) 59, 1015
BspPI GGATC 3 cut(s) 579, 1100, 1113
BssECI CCNNGG 2 cut(s) 909, 934
BssMI GATC 2 cut(s) 571, 1105
BssSI CACGAG 1 cut(s) 302
BssT1I CCWWGG 2 cut(s) 909, 934
Bst2BI CACGAG 1 cut(s) 302
Bst4CI ACNGT 3 cut(s) 27, 160, 1018
Bst6I CTCTTC 2 cut(s) 212, 400
BstC8I GCNNGC 4 cut(s) 42, 46, 486, 628
BstDEI CTNAG 2 cut(s) 151, 243
BstF5I GGATG 3 cut(s) 293, 382, 803
BstFNI CGCG 2 cut(s) 179, 1071
BstKTI GATC 2 cut(s) 574, 1108
BstMAI GTCTC 2 cut(s) 16, 83
BstMBI GATC 2 cut(s) 571, 1105
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 862, 1007
BstNSI RCATGY 3 cut(s) 48, 488, 613
BstSFI CTRYAG 1 cut(s) 875
BstUI CGCG 2 cut(s) 179, 1071
BstV1I GCAGC 4 cut(s) 362, 515, 580, 988
BstX2I RGATCY 2 cut(s) 571, 1105
BstXI CCANNNNNNTGG 2 cut(s) 102, 941
BstYI RGATCY 2 cut(s) 571, 1105
BsuRI GGCC 3 cut(s) 510, 626, 908
BtrI CACGTC 2 cut(s) 110, 749
BtsCI GGATG 3 cut(s) 293, 382, 803
BtsIMutI CAGTG 1 cut(s) 454
BtuMI TCGCGA 1 cut(s) 1071
BveI ACCTGC 2 cut(s) 59, 1015
Cac8I GCNNGC 4 cut(s) 42, 46, 486, 628
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 277, 906
Csp6I GTAC 2 cut(s) 917, 953
CviAII CATG 7 cut(s) 45, 335, 485, 566, 610, 722, 776
CviQI GTAC 2 cut(s) 917, 953
DdeI CTNAG 2 cut(s) 151, 243
DpnI GATC 2 cut(s) 573, 1107
DpnII GATC 2 cut(s) 571, 1105
DraI TTTAAA 1 cut(s) 516
DrdI GACNNNNNNGTC 1 cut(s) 75
DseDI GACNNNNNNGTC 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 2 cut(s) 212, 400
EarI CTCTTC 2 cut(s) 212, 400
Eco130I CCWWGG 2 cut(s) 909, 934
Eco24I GRGCYC 2 cut(s) 17, 303
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 837
EcoT14I CCWWGG 2 cut(s) 909, 934
EcoT38I GRGCYC 2 cut(s) 17, 303
ErhI CCWWGG 2 cut(s) 909, 934
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 7 cut(s) 48, 338, 488, 569, 613, 725, 779
FatI CATG 7 cut(s) 44, 334, 484, 565, 609, 721, 775
Fnu4HI GCNGC 4 cut(s) 351, 529, 594, 1002
FokI GGATG 3 cut(s) 300, 389, 790
FriOI GRGCYC 2 cut(s) 17, 303
Fsp4HI GCNGC 4 cut(s) 351, 529, 594, 1002
FspBI CTAG 2 cut(s) 354, 1044
GluI GCNGC 4 cut(s) 351, 529, 594, 1002
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 3 cut(s) 510, 626, 908
HapII CCGG 2 cut(s) 142, 1091
Hin1II CATG 7 cut(s) 48, 338, 488, 569, 613, 725, 779
HpaII CCGG 2 cut(s) 142, 1091
HphI GGTGA 2 cut(s) 73, 1064
Hpy166II GTNNAC 3 cut(s) 343, 382, 947
Hpy188III TCNNGA 4 cut(s) 21, 335, 1070, 1109
Hpy8I GTNNAC 3 cut(s) 343, 382, 947
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 8 cut(s) 27, 30, 290, 367, 410, 533, 819, 853
HpyCH4III ACNGT 3 cut(s) 27, 160, 1018
HpyCH4IV ACGT 4 cut(s) 109, 386, 736, 748
HpyCH4V TGCA 7 cut(s) 10, 48, 363, 488, 732, 865, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 862, 1007
HpyF3I CTNAG 2 cut(s) 151, 243
HpySE526I ACGT 4 cut(s) 109, 386, 736, 748
Hsp92II CATG 7 cut(s) 48, 338, 488, 569, 613, 725, 779
Kzo9I GATC 2 cut(s) 571, 1105
LpnPI CCDG 9 cut(s) 64, 132, 155, 349, 492, 640, 1020, 1104, 1122
Lsp1109I GCAGC 4 cut(s) 362, 515, 580, 988
LweI GCATC 4 cut(s) 558, 719, 801, 1077
MaeI CTAG 2 cut(s) 354, 1044
MaeII ACGT 4 cut(s) 109, 386, 736, 748
MaeIII GTNAC 3 cut(s) 105, 154, 269
MalI GATC 2 cut(s) 573, 1107
MboI GATC 2 cut(s) 571, 1105
MboII GAAGA 6 cut(s) 229, 387, 593, 779, 830, 1091
MflI RGATCY 2 cut(s) 571, 1105
MhlI GDGCHC 3 cut(s) 17, 174, 303
MlsI TGGCCA 1 cut(s) 626
MluNI TGGCCA 1 cut(s) 626
MlyI GAGTC 4 cut(s) 63, 199, 222, 1049
MmeI TCCRAC 2 cut(s) 13, 406
Mox20I TGGCCA 1 cut(s) 626
MroXI GAANNNNTTC 1 cut(s) 771
MscI TGGCCA 1 cut(s) 626
MseI TTAA 2 cut(s) 515, 641
Msp20I TGGCCA 1 cut(s) 626
MspA1I CMGCKG 1 cut(s) 880
MspI CCGG 2 cut(s) 142, 1091
MvnI CGCG 2 cut(s) 179, 1071
MwoI GCNNNNNNNGC 2 cut(s) 862, 1007
NdeII GATC 2 cut(s) 571, 1105
NlaIII CATG 7 cut(s) 48, 338, 488, 569, 613, 725, 779
NlaIV GGNNCC 2 cut(s) 279, 1107
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 105, 154
NruI TCGCGA 1 cut(s) 1071
NspI RCATGY 3 cut(s) 48, 488, 613
PaeI GCATGC 2 cut(s) 48, 488
PagI TCATGA 1 cut(s) 334
PaqCI CACCTGC 2 cut(s) 59, 1015
PciI ACATGT 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 771
PfeI GAWTC 6 cut(s) 253, 461, 679, 1021, 1073, 1094
PkrI GCNGC 4 cut(s) 352, 530, 595, 1003
PleI GAGTC 4 cut(s) 63, 198, 222, 1048
PpsI GAGTC 4 cut(s) 63, 198, 222, 1048
PscI ACATGT 1 cut(s) 609
PshBI ATTAAT 1 cut(s) 641
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 279, 1107
PspPI GGNCC 2 cut(s) 277, 906
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 571, 1105
PvuII CAGCTG 1 cut(s) 880
RruI TCGCGA 1 cut(s) 1071
RsaI GTAC 2 cut(s) 918, 954
RsaNI GTAC 2 cut(s) 917, 953
SaqAI TTAA 2 cut(s) 515, 641
SatI GCNGC 4 cut(s) 351, 529, 594, 1002
Sau3AI GATC 2 cut(s) 571, 1105
Sau96I GGNCC 2 cut(s) 277, 906
SchI GAGTC 4 cut(s) 63, 199, 222, 1049
SduI GDGCHC 3 cut(s) 17, 174, 303
SfaNI GCATC 4 cut(s) 558, 719, 801, 1077
SfcI CTRYAG 1 cut(s) 875
SinI GGWCC 1 cut(s) 277
SphI GCATGC 2 cut(s) 48, 488
SsiI CCGC 1 cut(s) 569
SspMI CTAG 2 cut(s) 354, 1044
StyI CCWWGG 2 cut(s) 909, 934
TaaI ACNGT 3 cut(s) 27, 160, 1018
TaiI ACGT 4 cut(s) 112, 389, 739, 751
TaqI TCGA 3 cut(s) 20, 231, 970
TaqII GACCGA 1 cut(s) 152
TatI WGTACW 1 cut(s) 916
TfiI GAWTC 6 cut(s) 253, 461, 679, 1021, 1073, 1094
Tru1I TTAA 2 cut(s) 515, 641
Tru9I TTAA 2 cut(s) 515, 641
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 2 cut(s) 105, 154
TseI GCWGC 4 cut(s) 350, 528, 593, 1001
Tsp45I GTSAC 2 cut(s) 105, 154
TspDTI ATGAA 5 cut(s) 351, 486, 710, 764, 801
TspGWI ACGGA 3 cut(s) 183, 265, 290
TspRI CASTG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 277
VspI ATTAAT 1 cut(s) 641
XapI RAATTY 6 cut(s) 208, 540, 700, 716, 771, 957
XceI RCATGY 3 cut(s) 48, 488, 613
XmnI GAANNNNTTC 1 cut(s) 771
XspI CTAG 2 cut(s) 354, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.