RchiOBHm_Chr1g0332721

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002825
Physical Location & Seq
Forward (+)
24465262 .. 24467861
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56160

Sequence Viewer

Length: 567 bp
ATGGCGGCGGAATGGATTTGCAGAGCACTTCGAGACGGAGCTTTGGAAGGCGAGCACGCGCCGGCTCTTACAATAAAGGATTTCATCGCCTCACCTCTAGGCTTCGACGTCTTCACTCACTTCCTCTCTCACCACTTCACCAATATCTCTGCTGGCAAATTTCAATCGCGAGGTCTCGTGCTCGTCGCATTTTCTCGGAGTCCCTCATTTTACTTGGACTTGTTGAGCAAGAGGGGACTTCCTATTGCTTCGTCTCACCACTGGATTATGATTCTTGATTGTTACACGGATCCTCTTGGTTGGAAGGATCAGATGGGGCAGTGTGGGAGTGCGACCAAACTCTCTTATGACATAGCTAGTATTTGTGGGAATGTGAAGGATGTGGGTAGTCTCTTCTCTTTGATTATTTCACTTGGAAGAGGATTTGTTGTACAAGGGAAAGTTCGCTTTTGTGTTGCAATAGACTCAGTAAATGAAATGTTAAGATATGCATCCTTGTCATCAGTTGCTGGCCTTATAAGCAGTCTTCGTTGCTGTGGTATATCCAAGTACAACCAAACCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

188

Amino Acids

20.53

Weight (kDa)

8.49

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
AatII GACGTC 1 cut(s) 111
AccII CGCG 2 cut(s) 59, 169
AciI CCGC 2 cut(s) 5, 8
AclWI GGATC 3 cut(s) 284, 297, 315
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 432, 551
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 2 cut(s) 41, 356
AluI AGCT 2 cut(s) 41, 356
Alw21I GWGCWC 3 cut(s) 28, 57, 183
Alw26I GTCTC 4 cut(s) 27, 179, 258, 395
AlwI GGATC 3 cut(s) 284, 297, 315
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 1 cut(s) 511
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 1 cut(s) 61
AsuHPI GGTGA 4 cut(s) 84, 122, 130, 248
BamHI GGATCC 1 cut(s) 289
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 2 cut(s) 103, 518
Bbv12I GWGCWC 3 cut(s) 28, 57, 183
BccI CCATC 1 cut(s) 307
BcoDI GTCTC 4 cut(s) 27, 179, 258, 395
BfaI CTAG 2 cut(s) 98, 357
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 291
BmsI GCATC 1 cut(s) 500
BpiI GAAGAC 2 cut(s) 103, 518
BsaBI GATNNNNATC 1 cut(s) 490
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 490
BseGI GGATG 2 cut(s) 385, 491
BseJI GATNNNNATC 1 cut(s) 490
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 1 cut(s) 266
Bsh1236I CGCG 2 cut(s) 59, 169
BshFI GGCC 1 cut(s) 513
BsiHKAI GWGCWC 3 cut(s) 28, 57, 183
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 2 cut(s) 186, 249
BsmAI GTCTC 4 cut(s) 27, 179, 258, 395
BsmBI CGTCTC 2 cut(s) 27, 258
BsmFI GGGAC 2 cut(s) 186, 249
BsnI GGCC 1 cut(s) 513
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 28, 57, 183
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 2 cut(s) 289, 307
Bsp68I TCGCGA 1 cut(s) 169
BspACI CCGC 2 cut(s) 5, 8
BspANI GGCC 1 cut(s) 513
BspCNI CTCAG 1 cut(s) 479
BspFNI CGCG 2 cut(s) 59, 169
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 3 cut(s) 284, 297, 315
BspTNI GGTCTC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 430
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 2 cut(s) 289, 307
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 398, 412
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 430
BstC8I GCNNGC 5 cut(s) 53, 57, 63, 154, 511
BstDEI CTNAG 1 cut(s) 466
BstF5I GGATG 2 cut(s) 385, 491
BstFNI CGCG 2 cut(s) 59, 169
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 2 cut(s) 292, 310
BstMAI GTCTC 4 cut(s) 27, 179, 258, 395
BstMBI GATC 2 cut(s) 289, 307
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstUI CGCG 2 cut(s) 59, 169
BstV2I GAAGAC 2 cut(s) 103, 518
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 513
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 2 cut(s) 385, 491
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 259, 326
BtuMI TCGCGA 1 cut(s) 169
Cac8I GCNNGC 5 cut(s) 53, 57, 63, 154, 511
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 61
Csp6I GTAC 2 cut(s) 431, 550
CviAII CATG 1 cut(s) 562
CviJI RGCY 5 cut(s) 41, 65, 102, 356, 513
CviKI_1 RGCY 5 cut(s) 41, 65, 102, 356, 513
CviQI GTAC 2 cut(s) 431, 550
DdeI CTNAG 1 cut(s) 466
DpnI GATC 2 cut(s) 291, 309
DpnII GATC 2 cut(s) 289, 307
Eam1104I CTCTTC 2 cut(s) 398, 412
EarI CTCTTC 2 cut(s) 398, 412
EciI GGCGGA 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 179
EcoT22I ATGCAT 1 cut(s) 493
Esp3I CGTCTC 2 cut(s) 27, 258
FaeI CATG 1 cut(s) 565
FaiI YATR 7 cut(s) 269, 348, 353, 489, 518, 542, 563
FaqI GGGAC 2 cut(s) 186, 249
FatI CATG 1 cut(s) 561
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 392, 478
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 98, 357
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 513
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 565
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 3 cut(s) 199, 271, 464
HpaII CCGG 1 cut(s) 62
HphI GGTGA 4 cut(s) 84, 122, 130, 248
Hpy188I TCNGA 2 cut(s) 198, 312
Hpy188III TCNNGA 3 cut(s) 32, 168, 275
Hpy99I CGWCG 2 cut(s) 110, 188
HpyAV CCTTC 3 cut(s) 41, 298, 370
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 21, 458, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpyF3I CTNAG 1 cut(s) 466
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 565
HspAI GCGC 1 cut(s) 59
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 289, 307
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 75, 138, 247, 495
LweI GCATC 1 cut(s) 500
MaeI CTAG 2 cut(s) 98, 357
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 281
MalI GATC 2 cut(s) 291, 309
MboI GATC 2 cut(s) 289, 307
MboII GAAGA 4 cut(s) 103, 385, 429, 518
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 3 cut(s) 28, 57, 183
MluCI AATT 1 cut(s) 158
MlyI GAGTC 2 cut(s) 208, 458
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 8 cut(s) 100, 105, 134, 164, 214, 225, 303, 413
Mph1103I ATGCAT 1 cut(s) 493
MroNI GCCGGC 1 cut(s) 61
MseI TTAA 1 cut(s) 482
MspI CCGG 1 cut(s) 62
MvnI CGCG 2 cut(s) 59, 169
MwoI GCNNNNNNNGC 1 cut(s) 519
NaeI GCCGGC 1 cut(s) 63
NdeII GATC 2 cut(s) 289, 307
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 565
NlaIV GGNNCC 1 cut(s) 291
NruI TCGCGA 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 493
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 207, 458
PpsI GAGTC 2 cut(s) 207, 458
PsiI TTATAA 1 cut(s) 518
PspN4I GGNNCC 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 289
RruI TCGCGA 1 cut(s) 169
RsaI GTAC 2 cut(s) 432, 551
RsaNI GTAC 2 cut(s) 431, 550
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 289, 307
SchI GAGTC 2 cut(s) 208, 458
SduI GDGCHC 3 cut(s) 28, 57, 183
SetI ASST 5 cut(s) 43, 97, 111, 175, 358
SfaNI GCATC 1 cut(s) 500
Sse9I AATT 1 cut(s) 158
SsiI CCGC 2 cut(s) 5, 8
SspMI CTAG 2 cut(s) 98, 357
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 31, 105
TasI AATT 1 cut(s) 158
TatI WGTACW 2 cut(s) 430, 549
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TscAI CASTG 2 cut(s) 266, 326
TspDTI ATGAA 2 cut(s) 73, 489
TspGWI ACGGA 2 cut(s) 51, 302
TspRI CASTG 2 cut(s) 266, 326
XapI RAATTY 1 cut(s) 158
XspI CTAG 2 cut(s) 98, 357
ZraI GACGTC 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.