Rh6CG194100

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002825
Physical Location & Seq
Forward (+)
32052323 .. 32066887
14565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG194100.1

Sequence Viewer

Length: 1122 bp
ATGGCGGCGGAATGGATTTGCAGAGCACTTCGAGACGGAGCTTTGGAAGGCGAGCACGCGCCAGCTCTTACAATAAAGGACTTCATGGCCTCACCTCTAGGCTTCGACGTCTTCACTCACTTCCTCTCTCACCACTCCACCAATATCTCTGCTGGCAAATCTCAATCGCGAGGTCTCGTGCTCGTCGCGTTTTCTCGGAGTCCCTCGTTTTACTTGGACTTGTTGAGCAAGAGGGGACTTCCTATTGCTTCGTCTCACCACTGGATTCGGATTCTTGATTGTTACACGGATCCTCTTGGTTGGAAGGATCAGATGGGGCAGTGTGGGAGTGCGACCAAACTCTCTTATGACATAGCTAGTATTTGTGGGAATGTGAAGGATGTGGATAGTCTCTTCTCTTTGATTATTTCACTTGGAAGAGGATTTGTTGTACAAGGGAAAGTTCGCTTTTGTGTTGCAATAGACTCAGTAAATGAAATGTTAAGATATGCATCCTTGTCATCAGTTGCTGGCCTTATAAGCAGTCTTCGTTGCTGTGATCAGATTTCAAGCATCTTTTGGTTTTGTCATGCGGATCTTTGTGAAGAAAGGGCAACTTCTACTCTTGAATATATGTCATCTATGGTGGCCAGCATTGAGCCATTAATCCAGTTTGCAAATGGACAAATAAGTAATTCAGAGAATCTTTCTTTACTTGATCAAAATTTTACTGGAGGGAAACTTCATCTCCGGTGCAAGCGGAGAAATGGACGTGTACGAGTGATGTTTGAAGAAATTCACCTTGGGCAGTCAGGCATCAACTTTACATCCACTTCATTTGAAGGAGTAATCAATCAAGGTCTTGTTCCCAAGGTGCAATTTAGTCTACAACTATCAGAGAAAGAGCTAAAGGATAGGGCTGATGTTGTACTTCCATTTGAACACCAAGGAAATGGTAAACCTGTACAAATTTATGATGGGCGAAAATCTCTTACGGATAGCAAGTATGAGGTAGCTCCCATACCAAACGGGATTTCAGATATAGATAAGGAGTCTGGCAAGGGAGAAATAATATATTTTCGCGATTCAGAAGACGAAATGCCAGATTCTGATGAGGACCCTGATGATGATTTGGACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

373

Amino Acids

41.3

Weight (kDa)

5.18

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elong_Iki1 PF10483 148 - 306 1.5e-09 Elongator subunit Iki1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
AatII GACGTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 865
AccII CGCG 4 cut(s) 59, 169, 188, 1062
AciI CCGC 4 cut(s) 5, 8, 572, 739
AclWI GGATC 4 cut(s) 284, 297, 315, 582
AcoI YGGCCR 1 cut(s) 627
AcsI RAATTY 3 cut(s) 703, 774, 948
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 4 cut(s) 432, 756, 909, 945
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 5 cut(s) 549, 608, 770, 821, 920
AjiI CACGTC 1 cut(s) 752
AjuI GAANNNNNNNTTGG 4 cut(s) 765, 797, 997, 1029
AluBI AGCT 5 cut(s) 41, 65, 356, 886, 995
AluI AGCT 5 cut(s) 41, 65, 356, 886, 995
Alw21I GWGCWC 3 cut(s) 28, 57, 183
Alw26I GTCTC 4 cut(s) 27, 179, 258, 395
AlwI GGATC 4 cut(s) 284, 297, 315, 582
AlwNI CAGNNNCTG 2 cut(s) 509, 1088
AoxI GGCC 3 cut(s) 87, 511, 627
ApoI RAATTY 3 cut(s) 703, 774, 948
AseI ATTAAT 1 cut(s) 644
Asp700I GAANNNNTTC 1 cut(s) 774
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 1096
AsuHPI GGTGA 4 cut(s) 84, 122, 248, 770
AvaII GGWCC 1 cut(s) 1096
BalI TGGCCA 1 cut(s) 629
BamHI GGATCC 1 cut(s) 289
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 3 cut(s) 103, 518, 1077
Bbv12I GWGCWC 3 cut(s) 28, 57, 183
BccI CCATC 2 cut(s) 307, 950
BclI TGATCA 2 cut(s) 538, 697
BcoDI GTCTC 4 cut(s) 27, 179, 258, 395
BfaI CTAG 2 cut(s) 98, 357
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 1096
BmgBI CACGTC 1 cut(s) 752
BmgT120I GGNCC 1 cut(s) 1096
BmiI GGNNCC 2 cut(s) 291, 1098
BmsI GCATC 3 cut(s) 500, 561, 804
BpiI GAAGAC 3 cut(s) 103, 518, 1077
BpmI CTGGAG 1 cut(s) 732
BsaBI GATNNNNATC 1 cut(s) 490
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 3 cut(s) 781, 849, 925
BsaWI WCCGGW 1 cut(s) 729
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bse1I ACTGG 3 cut(s) 266, 649, 715
Bse8I GATNNNNATC 1 cut(s) 490
BseDI CCNNGG 3 cut(s) 781, 849, 925
BseGI GGATG 3 cut(s) 385, 491, 806
BseJI GATNNNNATC 1 cut(s) 490
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 3 cut(s) 266, 649, 715
Bsh1236I CGCG 4 cut(s) 59, 169, 188, 1062
BshFI GGCC 3 cut(s) 89, 513, 629
BsiHKAI GWGCWC 3 cut(s) 28, 57, 183
BsiSI CCGG 1 cut(s) 730
BslFI GGGAC 2 cut(s) 186, 249
BsmAI GTCTC 4 cut(s) 27, 179, 258, 395
BsmBI CGTCTC 2 cut(s) 27, 258
BsmFI GGGAC 2 cut(s) 186, 249
BsnI GGCC 3 cut(s) 89, 513, 629
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 28, 57, 183
Bsp1407I TGTACA 2 cut(s) 430, 943
Bsp143I GATC 5 cut(s) 289, 307, 538, 574, 697
Bsp68I TCGCGA 2 cut(s) 169, 1062
BspACI CCGC 4 cut(s) 5, 8, 572, 739
BspANI GGCC 3 cut(s) 89, 513, 629
BspCNI CTCAG 1 cut(s) 479
BspFNI CGCG 4 cut(s) 59, 169, 188, 1062
BspLI GGNNCC 2 cut(s) 291, 1098
BspPI GGATC 4 cut(s) 284, 297, 315, 582
BspTNI GGTCTC 1 cut(s) 179
BsrGI TGTACA 2 cut(s) 430, 943
BsrI ACTGG 3 cut(s) 266, 649, 715
BssECI CCNNGG 3 cut(s) 781, 849, 925
BssMI GATC 5 cut(s) 289, 307, 538, 574, 697
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 3 cut(s) 781, 849, 925
Bst2BI CACGAG 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 398, 412
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 2 cut(s) 430, 943
BstC8I GCNNGC 7 cut(s) 53, 57, 63, 154, 511, 631, 737
BstDEI CTNAG 1 cut(s) 466
BstF5I GGATG 3 cut(s) 385, 491, 806
BstFNI CGCG 4 cut(s) 59, 169, 188, 1062
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 5 cut(s) 292, 310, 541, 577, 700
BstMAI GTCTC 4 cut(s) 27, 179, 258, 395
BstMBI GATC 5 cut(s) 289, 307, 538, 574, 697
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstUI CGCG 4 cut(s) 59, 169, 188, 1062
BstV2I GAAGAC 3 cut(s) 103, 518, 1077
BstX2I RGATCY 2 cut(s) 289, 574
BstXI CCANNNNNNTGG 1 cut(s) 932
BstYI RGATCY 2 cut(s) 289, 574
BsuRI GGCC 3 cut(s) 89, 513, 629
BtrI CACGTC 1 cut(s) 752
BtsCI GGATG 3 cut(s) 385, 491, 806
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 259, 326
BtuMI TCGCGA 2 cut(s) 169, 1062
Cac8I GCNNGC 7 cut(s) 53, 57, 63, 154, 511, 631, 737
CaiI CAGNNNCTG 2 cut(s) 509, 1088
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 1096
Csp6I GTAC 4 cut(s) 431, 755, 908, 944
CspCI CAANNNNNGTGG 2 cut(s) 799, 834
CviAII CATG 2 cut(s) 85, 569
CviQI GTAC 4 cut(s) 431, 755, 908, 944
DdeI CTNAG 1 cut(s) 466
DpnI GATC 5 cut(s) 291, 309, 540, 576, 699
DpnII GATC 5 cut(s) 289, 307, 538, 574, 697
EaeI YGGCCR 1 cut(s) 627
Eam1104I CTCTTC 2 cut(s) 398, 412
EarI CTCTTC 2 cut(s) 398, 412
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 3 cut(s) 781, 849, 925
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 1096
EcoO109I RGGNCCY 1 cut(s) 1096
EcoT14I CCWWGG 3 cut(s) 781, 849, 925
EcoT22I ATGCAT 1 cut(s) 493
ErhI CCWWGG 3 cut(s) 781, 849, 925
Esp3I CGTCTC 2 cut(s) 27, 258
FaeI CATG 2 cut(s) 88, 572
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FaqI GGGAC 2 cut(s) 186, 249
FatI CATG 2 cut(s) 84, 568
FbaI TGATCA 2 cut(s) 538, 697
FblI GTMKAC 1 cut(s) 865
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 392, 478, 793
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 98, 357
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 3 cut(s) 89, 513, 629
HapII CCGG 1 cut(s) 730
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 88, 572
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 8 cut(s) 199, 265, 271, 464, 682, 1031, 1064, 1085
HpaII CCGG 1 cut(s) 730
HphI GGTGA 4 cut(s) 84, 122, 248, 770
Hpy166II GTNNAC 3 cut(s) 755, 866, 938
Hpy188I TCNGA 9 cut(s) 198, 270, 312, 543, 679, 877, 1018, 1069, 1090
Hpy188III TCNNGA 5 cut(s) 32, 168, 275, 605, 1061
Hpy8I GTNNAC 3 cut(s) 755, 866, 938
Hpy99I CGWCG 2 cut(s) 110, 188
HpyAV CCTTC 4 cut(s) 41, 298, 370, 815
HpyCH4IV ACGT 2 cut(s) 108, 751
HpyCH4V TGCA 6 cut(s) 21, 458, 491, 656, 735, 856
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpyF3I CTNAG 1 cut(s) 466
HpySE526I ACGT 2 cut(s) 108, 751
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 88, 572
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 2 cut(s) 538, 697
Kzo9I GATC 5 cut(s) 289, 307, 538, 574, 697
LmnI GCTCC 2 cut(s) 38, 1000
LweI GCATC 3 cut(s) 500, 561, 804
MaeI CTAG 2 cut(s) 98, 357
MaeII ACGT 2 cut(s) 108, 751
MaeIII GTNAC 1 cut(s) 281
MalI GATC 5 cut(s) 291, 309, 540, 576, 699
MboI GATC 5 cut(s) 289, 307, 538, 574, 697
MboII GAAGA 7 cut(s) 103, 385, 429, 518, 596, 782, 1082
MflI RGATCY 2 cut(s) 289, 574
MhlI GDGCHC 3 cut(s) 28, 57, 183
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 5 cut(s) 673, 703, 774, 857, 948
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 3 cut(s) 208, 458, 1040
MmeI TCCRAC 1 cut(s) 281
Mox20I TGGCCA 1 cut(s) 629
Mph1103I ATGCAT 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 774
MscI TGGCCA 1 cut(s) 629
MseI TTAA 2 cut(s) 482, 644
Msp20I TGGCCA 1 cut(s) 629
MspI CCGG 1 cut(s) 730
MvnI CGCG 4 cut(s) 59, 169, 188, 1062
MwoI GCNNNNNNNGC 1 cut(s) 519
NdeII GATC 5 cut(s) 289, 307, 538, 574, 697
NlaIII CATG 2 cut(s) 88, 572
NlaIV GGNNCC 2 cut(s) 291, 1098
NruI TCGCGA 2 cut(s) 169, 1062
NsiI ATGCAT 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 5 cut(s) 265, 271, 682, 1064, 1085
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 3 cut(s) 207, 458, 1039
PpsI GAGTC 3 cut(s) 207, 458, 1039
PpuMI RGGWCCY 1 cut(s) 1096
PshBI ATTAAT 1 cut(s) 644
PsiI TTATAA 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 1096
PspN4I GGNNCC 2 cut(s) 291, 1098
PspPI GGNCC 1 cut(s) 1096
PspPPI RGGWCCY 1 cut(s) 1096
PstNI CAGNNNCTG 2 cut(s) 509, 1088
PsuI RGATCY 2 cut(s) 289, 574
RruI TCGCGA 2 cut(s) 169, 1062
RsaI GTAC 4 cut(s) 432, 756, 909, 945
RsaNI GTAC 4 cut(s) 431, 755, 908, 944
SaqAI TTAA 2 cut(s) 482, 644
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 289, 307, 538, 574, 697
Sau96I GGNCC 1 cut(s) 1096
SchI GAGTC 3 cut(s) 208, 458, 1040
SduI GDGCHC 3 cut(s) 28, 57, 183
SfaNI GCATC 3 cut(s) 500, 561, 804
SinI GGWCC 1 cut(s) 1096
Sse9I AATT 5 cut(s) 673, 703, 774, 857, 948
SsiI CCGC 4 cut(s) 5, 8, 572, 739
SspMI CTAG 2 cut(s) 98, 357
StyI CCWWGG 3 cut(s) 781, 849, 925
TaiI ACGT 2 cut(s) 111, 754
TaqI TCGA 2 cut(s) 31, 105
TasI AATT 5 cut(s) 673, 703, 774, 857, 948
TatI WGTACW 3 cut(s) 430, 907, 943
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 5 cut(s) 265, 271, 682, 1064, 1085
Tru1I TTAA 2 cut(s) 482, 644
Tru9I TTAA 2 cut(s) 482, 644
TscAI CASTG 2 cut(s) 266, 326
TspDTI ATGAA 4 cut(s) 73, 489, 713, 804
TspGWI ACGGA 3 cut(s) 51, 302, 989
TspRI CASTG 2 cut(s) 266, 326
VpaK11BI GGWCC 1 cut(s) 1096
VspI ATTAAT 1 cut(s) 644
XapI RAATTY 3 cut(s) 703, 774, 948
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XmiI GTMKAC 1 cut(s) 865
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 2 cut(s) 98, 357
ZraI GACGTC 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.