Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002825

Physical Location & Seq

Genomic Coordinates Reverse (-)

29663767 .. 29665008

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCTTCTATGGTCGCCAGCATTGAGCCATTAATCCAGTTTGCAAATGGACAAAGAAGTAATTCAGAGAATCTTTCTTTAGTTGATCAAAATTTTACTAAAGGGAAACTTCATCTCCGGTGCAAGCGAAGAAATGGACGTGTCCGAGTGATGTTTGAAGAAATTCACATTGGACAGTCAGGCATCAACTTTACATCCACTTCATTTGAAGATGGAGTAATCAATCAAGGTCTTGTGCCCAAGGTGCAATTTAGTCTACAACTATCAGAGAAAGAGCTAAAGGATAGGGCTAATGTTGTACTTCCGTTTGAATACCAAGGAAATGGTAAACCTGTACAAATTTATGATGGGCGAAAATCTCTTACGGATAGCAAGTATGAGGTAGCTCCCGTACCGAACGGGAATTCAGATATAGATAAGGAGTCTAGCAAGGGAGAAATAATATATTTTCGCGATTCAGAAGATGAAATGCCAGATTCTGATGAGGACCCTGATGATGACTTGGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elong_Iki1

Protein Analysis

170

Amino Acids

19.13

Weight (kDa)

4.69

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18410 AT2G18410
fragaria_vesca	FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350
malus_domestica	MD00G1149900.v1.1
prunus_persica	Prupe.3G142900_v2.0.a1 Prupe.3G142900_v2.0.a1
pyrus_communis	pycom12g09090
rosa_chinensis	RchiOBHm_Chr1g0332721 RchiOBHm_Chr6g0273571
rosa_laevigata	RLG00000008678 RLG00000029647
rosa_roxburghii	Rroxscaffold_4G00318060 Rroxscaffold_5G00352600
rosa_rugosa	Rorug01G0104700 Rorug01G0104800 Rorug01G0104900 Rorug01G0105000 Rorug01G0105100 Rorug01G0105100 Rorug01G0105100
rosa_samantha	Rh1AG120600 Rh1AG127700 Rh1BG096900 Rh1CG115500 Rh1CG121500 Rh1DG132900 Rh6CG194100 Rh6DG186000
rosa_wichuraiana	Rw1G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AccII	CGCG	1 cut(s)	453
AcsI	RAATTY	4 cut(s)	91, 162, 339, 403
AfaI	GTAC	3 cut(s)	300, 336, 393
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	158, 209, 311
AjiI	CACGTC	1 cut(s)	140
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	2 cut(s)	277, 386
AluI	AGCT	2 cut(s)	277, 386
AlwNI	CAGNNNCTG	1 cut(s)	479
ApoI	RAATTY	4 cut(s)	91, 162, 339, 403
AseI	ATTAAT	1 cut(s)	32
Asp700I	GAANNNNTTC	2 cut(s)	61, 162
AspS9I	GGNCC	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	240
BccI	CCATC	2 cut(s)	206, 341
BclI	TGATCA	1 cut(s)	85
BfaI	CTAG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	487
BmgBI	CACGTC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	489
BmsI	GCATC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	240, 316
BsaWI	WCCGGW	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse1I	ACTGG	1 cut(s)	37
BseDI	CCNNGG	2 cut(s)	240, 316
BseGI	GGATG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	85
Bsp68I	TCGCGA	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	240, 316
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	2 cut(s)	240, 316
Bst4CI	ACNGT	1 cut(s)	177
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	19, 125
BstF5I	GGATG	1 cut(s)	194
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	323
BtrI	CACGTC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	194
BtuMI	TCGCGA	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	19, 125
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	3 cut(s)	299, 335, 392
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviJI	RGCY	4 cut(s)	28, 277, 290, 386
CviKI_1	RGCY	4 cut(s)	28, 277, 290, 386
CviQI	GTAC	3 cut(s)	299, 335, 392
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	240, 316
Eco47I	GGWCC	1 cut(s)	487
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	403
EcoT14I	CCWWGG	2 cut(s)	240, 316
ErhI	CCWWGG	2 cut(s)	240, 316
FaiI	YATR	7 cut(s)	11, 345, 378, 413, 445, 509, 511
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	256
FokI	GGATG	1 cut(s)	181
FspBI	CTAG	1 cut(s)	426
HapII	CCGG	1 cut(s)	118
HinfI	GANTC	4 cut(s)	70, 422, 455, 476
HpaII	CCGG	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	257, 329
Hpy188I	TCNGA	6 cut(s)	67, 146, 268, 409, 460, 481
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	2 cut(s)	257, 329
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	44, 123, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	7 cut(s)	31, 50, 131, 165, 345, 486, 504
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	139
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	4 cut(s)	141, 170, 221, 473
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	6 cut(s)	61, 91, 162, 248, 339, 403
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	2 cut(s)	373, 478
MroXI	GAANNNNTTC	2 cut(s)	61, 162
MseI	TTAA	1 cut(s)	32
MspI	CCGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	489
NruI	TCGCGA	1 cut(s)	453
PdmI	GAANNNNTTC	2 cut(s)	61, 162
PfeI	GAWTC	3 cut(s)	70, 455, 476
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	487
PspPPI	RGGWCCY	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	479
RruI	TCGCGA	1 cut(s)	453
RsaI	GTAC	3 cut(s)	300, 336, 393
RsaNI	GTAC	3 cut(s)	299, 335, 392
SaqAI	TTAA	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	431
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	7 cut(s)	142, 232, 246, 279, 334, 384, 388
SfaNI	GCATC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	487
Sse9I	AATT	6 cut(s)	61, 91, 162, 248, 339, 403
SspMI	CTAG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	240, 316
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	142
TasI	AATT	6 cut(s)	61, 91, 162, 248, 339, 403
TatI	WGTACW	2 cut(s)	298, 334
TfiI	GAWTC	3 cut(s)	70, 455, 476
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	101, 192, 480
TspGWI	ACGGA	2 cut(s)	294, 380
VpaK11BI	GGWCC	1 cut(s)	487
VspI	ATTAAT	1 cut(s)	32
XapI	RAATTY	4 cut(s)	91, 162, 339, 403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	2 cut(s)	61, 162
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.