Rorug01G0105000

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002825
Physical Location & Seq
Reverse (-)
18806839 .. 18807690
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0105000.1

Sequence Viewer

Length: 852 bp
ATGGCGACAGGTAGCCCTAAAACCCCGAAACCCTCATATGCAGCGGCACTTTCTGCAGCCTCTCCAGTTTCCTTTGCCATTGCTGATCTACCGGTTCCTTTTAAGGACGATGGTCTACTTTCTGTTCGAATTTCTGAGGAGCCCTTCCTTCGAGAGCTTGATCGATGTAAGACAAACTTAATTGGTCGTGTCACTACATCAATCAAGACTCCAGATCTCGTACAACACTTGAAGACACTTTGGTCTGACCTTGATCCTTGGACTATTGCGCCCCTTGGTAGGGGTTTCTTCATGCTTCAGTTCAGTACTCTGATTGACATGCAACGTGTCTGGGCATTGGGGGCTGTTCGTCTCCACACGGGAATGCTTCGGCTAATCAAATGGTCACCGGAGTTCTCTCCCTCAACTTACAAAAACACCTTTGCTCAAGTTTGGGTGAGATTTTGGGATCTAGGGTTTGCATTCTGGGACCAGCAAACCCTATTTGAAATTGCTGCTGGTGTGGGTACGCCTCTAAAGCTTGACCCGAGAACAAAGAACAGGACAGTGGGTCTATACGCCAGAGTCTTAATCGATGTTGATTTCTCCAACCCACTTCCGGATAAGATCAGAATAACTAGGGCTAACGGTGAAGTTGTGGTGGTCGGTGTAGAATTTGAATCTGAACCAGAAATATGCCACAAGTGTGGGATCGTTGGTCATACAGCTGATACATGCAGATCTCCTTCTGCCCTAACGGAGGAAAATGTGAATGTTAGCTCTGACACAATAGTTGATCGTGGAAGATCTTTGGTGCGGTCAAGACAGAGACGAAGAAGGTGTACATACATGTACATTTACAAGCATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

283

Amino Acids

31.89

Weight (kDa)

9.24

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 54 - 135 5.7e-09 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 115
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 2 cut(s) 44, 796
AclWI GGATC 3 cut(s) 248, 456, 698
AcsI RAATTY 2 cut(s) 129, 653
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 5 cut(s) 222, 307, 508, 823, 833
AfiI CCNNNNNNNGG 4 cut(s) 279, 280, 598, 739
AflIII ACRYGT 2 cut(s) 325, 828
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 3 cut(s) 232, 488, 659
AhdI GACNNNNNGTC 1 cut(s) 549
AleI CACNNNNGTG 1 cut(s) 684
AluBI AGCT 4 cut(s) 157, 520, 707, 759
AluI AGCT 4 cut(s) 157, 520, 707, 759
Alw26I GTCTC 2 cut(s) 356, 802
AlwI GGATC 3 cut(s) 248, 456, 698
Ama87I CYCGRG 1 cut(s) 526
Aor13HI TCCGGA 1 cut(s) 598
ApeKI GCWGC 3 cut(s) 41, 56, 494
ApoI RAATTY 2 cut(s) 129, 653
AsiGI ACCGGT 1 cut(s) 91
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 469
AsuHPI GGTGA 3 cut(s) 378, 448, 641
AsuII TTCGAA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 805, 837
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 3 cut(s) 53, 68, 481
BccI CCATC 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 356, 802
BfaI CTAG 2 cut(s) 452, 618
BfmI CTRYAG 1 cut(s) 54
BglII AGATCT 3 cut(s) 214, 719, 785
BisI GCNGC 4 cut(s) 42, 45, 57, 495
BlsI GCNGC 4 cut(s) 43, 46, 58, 496
BmcAI AGTACT 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 469
BmeRI GACNNNNNGTC 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 3 cut(s) 96, 141, 470
BoxI GACNNNNGTC 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 2 cut(s) 48, 195
Bpu14I TTCGAA 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 411
Bsa29I ATCGAT 2 cut(s) 163, 573
BsaJI CCNNGG 2 cut(s) 257, 274
BsaWI WCCGGW 3 cut(s) 91, 388, 598
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 280, 598, 739
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 78
BseAI TCCGGA 1 cut(s) 598
BseCI ATCGAT 2 cut(s) 163, 573
BseDI CCNNGG 2 cut(s) 257, 274
BseLI CCNNNNNNNGG 4 cut(s) 279, 280, 598, 739
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 3 cut(s) 53, 68, 481
BshTI ACCGGT 1 cut(s) 91
BshVI ATCGAT 2 cut(s) 163, 573
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 3 cut(s) 92, 389, 599
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 4 cut(s) 279, 280, 598, 739
BsmAI GTCTC 2 cut(s) 356, 802
BsmBI CGTCTC 2 cut(s) 356, 802
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 2 cut(s) 369, 461
BsoBI CYCGRG 1 cut(s) 526
Bsp119I TTCGAA 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 598
Bsp1407I TGTACA 2 cut(s) 821, 831
BspACI CCGC 2 cut(s) 44, 796
BspCNI CTCAG 1 cut(s) 127
BspDI ATCGAT 2 cut(s) 163, 573
BspEI TCCGGA 1 cut(s) 598
BspLI GGNNCC 3 cut(s) 96, 141, 470
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 3 cut(s) 248, 456, 698
BspT104I TTCGAA 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 91
BsrGI TGTACA 2 cut(s) 821, 831
BsrI ACTGG 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 257, 274
BssT1I CCWWGG 2 cut(s) 257, 274
Bst4CI ACNGT 2 cut(s) 547, 629
BstAPI GCANNNNNTGC 1 cut(s) 53
BstAUI TGTACA 2 cut(s) 821, 831
BstBI TTCGAA 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 135
BstEII GGTNACC 1 cut(s) 384
BstENI CCTNNNNNAGG 1 cut(s) 737
BstHHI GCGC 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 356, 802
BstMWI GCNNNNNNNGC 3 cut(s) 53, 341, 517
BstNSI RCATGY 3 cut(s) 322, 717, 832
BstPAI GACNNNNGTC 1 cut(s) 111
BstPI GGTNACC 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 53, 68, 481
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 4 cut(s) 214, 448, 719, 785
BstXI CCANNNNNNTGG 1 cut(s) 686
BstYI RGATCY 4 cut(s) 214, 448, 719, 785
Bsu15I ATCGAT 2 cut(s) 163, 573
BsuTUI ATCGAT 2 cut(s) 163, 573
BtsIMutI CAGTG 1 cut(s) 552
CfoI GCGC 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 469
ClaI ATCGAT 2 cut(s) 163, 573
Csp6I GTAC 5 cut(s) 221, 306, 507, 822, 832
CspAI ACCGGT 1 cut(s) 91
CviAII CATG 4 cut(s) 292, 319, 714, 829
CviQI GTAC 5 cut(s) 221, 306, 507, 822, 832
DdeI CTNAG 1 cut(s) 135
DrdI GACNNNNNNGTC 1 cut(s) 241
DriI GACNNNNNGTC 1 cut(s) 549
DseDI GACNNNNNNGTC 1 cut(s) 241
Eam1105I GACNNNNNGTC 1 cut(s) 549
Eco130I CCWWGG 2 cut(s) 257, 274
Eco24I GRGCYC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 526
Eco91I GGTNACC 1 cut(s) 384
EcoNI CCTNNNNNAGG 1 cut(s) 737
EcoO65I GGTNACC 1 cut(s) 384
EcoT14I CCWWGG 2 cut(s) 257, 274
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 2 cut(s) 257, 274
Esp3I CGTCTC 2 cut(s) 356, 802
FaeI CATG 4 cut(s) 295, 322, 717, 832
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 482
FatI CATG 4 cut(s) 291, 318, 713, 828
FauNDI CATATG 1 cut(s) 37
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 4 cut(s) 42, 45, 57, 495
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 4 cut(s) 42, 45, 57, 495
FspBI CTAG 2 cut(s) 452, 618
GlaI GCGC 1 cut(s) 270
GluI GCNGC 4 cut(s) 42, 45, 57, 495
GsuI CTGGAG 2 cut(s) 48, 195
HapII CCGG 3 cut(s) 92, 389, 599
HhaI GCGC 1 cut(s) 271
Hin1II CATG 4 cut(s) 295, 322, 717, 832
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 3 cut(s) 208, 564, 659
HpaII CCGG 3 cut(s) 92, 389, 599
HphI GGTGA 3 cut(s) 378, 448, 641
Hpy166II GTNNAC 2 cut(s) 116, 822
Hpy188I TCNGA 6 cut(s) 136, 247, 312, 611, 664, 763
Hpy188III TCNNGA 5 cut(s) 152, 205, 212, 599, 801
Hpy8I GTNNAC 2 cut(s) 116, 822
HpyAV CCTTC 4 cut(s) 154, 158, 735, 810
HpyCH4III ACNGT 2 cut(s) 547, 629
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 5 cut(s) 41, 56, 322, 461, 717
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 341, 517
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 4 cut(s) 295, 322, 717, 832
HspAI GCGC 1 cut(s) 269
Kpn2I TCCGGA 1 cut(s) 598
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 3 cut(s) 53, 68, 481
MaeI CTAG 2 cut(s) 452, 618
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 190, 384
MboII GAAGA 4 cut(s) 244, 280, 795, 825
MflI RGATCY 4 cut(s) 214, 448, 719, 785
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 5 cut(s) 129, 180, 489, 653, 847
MlyI GAGTC 2 cut(s) 202, 573
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 6 cut(s) 43, 70, 130, 412, 522, 733
MroI TCCGGA 1 cut(s) 598
MseI TTAA 3 cut(s) 102, 179, 569
MslI CAYNNNNRTG 2 cut(s) 362, 684
MspA1I CMGCKG 2 cut(s) 44, 707
MspI CCGG 3 cut(s) 92, 389, 599
Mva1269I GAATGC 2 cut(s) 369, 461
MwoI GCNNNNNNNGC 3 cut(s) 53, 341, 517
NdeI CATATG 1 cut(s) 37
NlaIII CATG 4 cut(s) 295, 322, 717, 832
NlaIV GGNNCC 3 cut(s) 96, 141, 470
NmuCI GTSAC 2 cut(s) 190, 384
NspI RCATGY 3 cut(s) 322, 717, 832
NspV TTCGAA 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 684
PciI ACATGT 1 cut(s) 828
PctI GAATGC 2 cut(s) 369, 461
PfeI GAWTC 1 cut(s) 659
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 4 cut(s) 43, 46, 58, 496
PleI GAGTC 2 cut(s) 202, 572
PpsI GAGTC 2 cut(s) 202, 572
PscI ACATGT 1 cut(s) 828
PshAI GACNNNNGTC 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 384
PspN4I GGNNCC 3 cut(s) 96, 141, 470
PspPI GGNCC 1 cut(s) 469
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 4 cut(s) 214, 448, 719, 785
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 5 cut(s) 222, 307, 508, 823, 833
RsaNI GTAC 5 cut(s) 221, 306, 507, 822, 832
RseI CAYNNNNRTG 2 cut(s) 362, 684
SaqAI TTAA 3 cut(s) 102, 179, 569
SatI GCNGC 4 cut(s) 42, 45, 57, 495
Sau96I GGNCC 1 cut(s) 469
ScaI AGTACT 1 cut(s) 307
SchI GAGTC 2 cut(s) 202, 573
SduI GDGCHC 1 cut(s) 144
SetI ASST 9 cut(s) 13, 159, 252, 328, 422, 522, 709, 761, 821
SfcI CTRYAG 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 127
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 2 cut(s) 362, 684
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 5 cut(s) 129, 180, 489, 653, 847
SsiI CCGC 2 cut(s) 44, 796
SspMI CTAG 2 cut(s) 452, 618
StyI CCWWGG 2 cut(s) 257, 274
TaaI ACNGT 2 cut(s) 547, 629
TaiI ACGT 1 cut(s) 328
TaqI TCGA 4 cut(s) 127, 151, 163, 573
TasI AATT 5 cut(s) 129, 180, 489, 653, 847
TatI WGTACW 3 cut(s) 305, 821, 831
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 3 cut(s) 102, 179, 569
Tru9I TTAA 3 cut(s) 102, 179, 569
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 2 cut(s) 190, 384
TseI GCWGC 3 cut(s) 41, 56, 494
Tsp45I GTSAC 2 cut(s) 190, 384
TspDTI ATGAA 1 cut(s) 280
TspGWI ACGGA 1 cut(s) 752
TspRI CASTG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 469
XagI CCTNNNNNAGG 1 cut(s) 737
XapI RAATTY 2 cut(s) 129, 653
XceI RCATGY 3 cut(s) 322, 717, 832
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 2 cut(s) 452, 618
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.