Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002825

Physical Location & Seq

Genomic Coordinates Forward (+)

34816129 .. 34818879

Gene Structure 2751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008678

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATTTTGATTTGCAGAGGTCTCGTCCTCGTCGCGTTTTCTTGGAGTCCGTCGTTTTACTTGGACTTGTTGAGCAAGAGGGGACTTCTTATTGCTTCGTCTCACCACTACCACTGGTCAGTGACTTCATATTGCTTCGCACCACTAGGAATAAACATCTTCAGACTTGTTGGACAAGGGAAAGTTCGCTTTTGTGTTGCAATAGACTCAGTAAATGAAAGGTTAAGATATGCATCCTTGTCGTCAGTTGCTGGCCTTATAAGCAGTCTTCGTTGCTGTGATCAGATTTCAAGAATCTTTTGGTTTTGTCATGATGATCTTTGTGAAGAAAGGGCAACTTCTACTCTTGAATATATGTCATCTATGGTGGCCAGCATTGAGCCATTAATCCACTTTGCAAATGGACAAAGAAGTAATTCAGAGAATCTTTCTTTACTCTTGATCAAAATTTTACTACAGGGAAACTTCATCTCTGGTGCAAGCAAAGGAATGGACGTGTCCGAAAATTCAATTGGGCAGTCAGGCATCAACTTTACTTCCGCTTCATTTGAAGATGGAGTAATCAATCAAGTTCTTGTGCCCAAGTTACCTATTTATTGTTATGTGCAATTTAGTCTACAGCTATCAGAGAAAGAGCTAAAGGATAGGGCTAATGTTGTACTTCCATTTGAACACCAAGGAAATGGTAAACCTGTACAAATTTATGATGGGCGAAAATCCCTTATGGATAGCAAGTATGAGGTAGCTCCCCAAGATGAAATGCCAGATTCTGATGAGGACCCTAATGATGATTTGGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elong_Iki1

Protein Analysis

268

Amino Acids

29.82

Weight (kDa)

5.13

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18410 AT2G18410
fragaria_vesca	FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350 FvH4_4g11350
malus_domestica	MD00G1149900.v1.1
prunus_persica	Prupe.3G142900_v2.0.a1 Prupe.3G142900_v2.0.a1
pyrus_communis	pycom12g09090
rosa_chinensis	RchiOBHm_Chr1g0332721 RchiOBHm_Chr6g0273571
rosa_laevigata	RLG00000008678 RLG00000029647
rosa_roxburghii	Rroxscaffold_4G00318060 Rroxscaffold_5G00352600
rosa_rugosa	Rorug01G0104700 Rorug01G0104800 Rorug01G0104900 Rorug01G0105000 Rorug01G0105100 Rorug01G0105100 Rorug01G0105100
rosa_samantha	Rh1AG120600 Rh1AG127700 Rh1BG096900 Rh1CG115500 Rh1CG121500 Rh1DG132900 Rh6CG194100 Rh6DG186000
rosa_wichuraiana	Rw1G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	616
AccII	CGCG	1 cut(s)	35
AciI	CCGC	1 cut(s)	540
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	447, 505, 699
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	2 cut(s)	660, 696
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	5 cut(s)	291, 350, 510, 551, 671
AjiI	CACGTC	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	3 cut(s)	622, 637, 746
AluI	AGCT	3 cut(s)	622, 637, 746
Alw26I	GTCTC	2 cut(s)	26, 105
AlwNI	CAGNNNCTG	2 cut(s)	251, 770
AoxI	GGCC	2 cut(s)	253, 369
ApoI	RAATTY	3 cut(s)	447, 505, 699
AseI	ATTAAT	1 cut(s)	386
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	778
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	778
BaeGI	GKGCMC	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	260
BccI	CCATC	2 cut(s)	548, 701
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 222, 256
BclI	TGATCA	2 cut(s)	280, 441
BcoDI	GTCTC	2 cut(s)	26, 105
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	455, 617
Bme18I	GGWCC	1 cut(s)	778
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	1 cut(s)	780
BmsI	GCATC	2 cut(s)	242, 534
BpiI	GAAGAC	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	119
Bse8I	GATNNNNATC	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	255, 371
BslFI	GGGAC	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	26, 105
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	255, 371
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp1407I	TGTACA	1 cut(s)	694
Bsp143I	GATC	3 cut(s)	280, 316, 441
BspACI	CCGC	1 cut(s)	540
BspANI	GGCC	2 cut(s)	255, 371
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	780
BspTNI	GGTCTC	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	694
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	676
BssMI	GATC	3 cut(s)	280, 316, 441
BssT1I	CCWWGG	1 cut(s)	676
BstAUI	TGTACA	1 cut(s)	694
BstC8I	GCNNGC	3 cut(s)	253, 373, 481
BstDEI	CTNAG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	3 cut(s)	283, 319, 444
BstMAI	GTCTC	2 cut(s)	26, 105
BstMBI	GATC	3 cut(s)	280, 316, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstSFI	CTRYAG	2 cut(s)	455, 617
BstSLI	GKGCMC	1 cut(s)	582
BstUI	CGCG	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	255, 371
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	112, 126
Cac8I	GCNNGC	3 cut(s)	253, 373, 481
CaiI	CAGNNNCTG	2 cut(s)	251, 770
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	778
Csp6I	GTAC	2 cut(s)	659, 695
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	7 cut(s)	255, 371, 382, 622, 637, 650, 746
CviKI_1	RGCY	7 cut(s)	255, 371, 382, 622, 637, 650, 746
CviQI	GTAC	2 cut(s)	659, 695
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	3 cut(s)	282, 318, 443
DpnII	GATC	3 cut(s)	280, 316, 441
EaeI	YGGCCR	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	676
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	778
Eco57I	CTGAAG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	676
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	1 cut(s)	314
FalI	AAGNNNNNCTT	2 cut(s)	322, 354
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	310
FbaI	TGATCA	2 cut(s)	280, 441
FblI	GTMKAC	1 cut(s)	616
FokI	GGATG	1 cut(s)	220
FspBI	CTAG	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	255, 371
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	5 cut(s)	46, 206, 294, 424, 767
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	617, 689
Hpy188I	TCNGA	6 cut(s)	164, 285, 421, 502, 628, 772
Hpy188III	TCNNGA	4 cut(s)	291, 311, 347, 439
Hpy8I	GTNNAC	2 cut(s)	617, 689
Hpy99I	CGWCG	2 cut(s)	35, 55
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	6 cut(s)	15, 200, 233, 398, 479, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	1 cut(s)	314
Ksp22I	TGATCA	2 cut(s)	280, 441
Kzo9I	GATC	3 cut(s)	280, 316, 441
LmnI	GCTCC	1 cut(s)	751
LpnPI	CCDG	8 cut(s)	100, 237, 385, 443, 459, 507, 705, 777
LweI	GCATC	2 cut(s)	242, 534
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	121, 585
MalI	GATC	3 cut(s)	282, 318, 443
MboI	GATC	3 cut(s)	280, 316, 441
MboII	GAAGA	4 cut(s)	151, 260, 338, 563
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	582
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	6 cut(s)	415, 447, 505, 510, 608, 699
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	55, 200
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	5 cut(s)	11, 38, 72, 733, 769
Mox20I	TGGCCA	1 cut(s)	371
Mph1103I	ATGCAT	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	2 cut(s)	224, 386
Msp20I	TGGCCA	1 cut(s)	371
MunI	CAATTG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	261
NdeII	GATC	3 cut(s)	280, 316, 441
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	1 cut(s)	780
NmuCI	GTSAC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	235
PagI	TCATGA	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	294, 424, 767
PleI	GAGTC	2 cut(s)	54, 200
PpsI	GAGTC	2 cut(s)	54, 200
PpuMI	RGGWCCY	1 cut(s)	778
PshBI	ATTAAT	1 cut(s)	386
PsiI	TTATAA	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	778
PspN4I	GGNNCC	1 cut(s)	780
PspPI	GGNCC	1 cut(s)	778
PspPPI	RGGWCCY	1 cut(s)	778
PstNI	CAGNNNCTG	2 cut(s)	251, 770
RsaI	GTAC	2 cut(s)	660, 696
RsaNI	GTAC	2 cut(s)	659, 695
SaqAI	TTAA	2 cut(s)	224, 386
Sau3AI	GATC	3 cut(s)	280, 316, 441
Sau96I	GGNCC	1 cut(s)	778
SchI	GAGTC	2 cut(s)	55, 200
SduI	GDGCHC	1 cut(s)	582
SetI	ASST	9 cut(s)	22, 224, 498, 592, 624, 639, 694, 744, 748
SfaNI	GCATC	2 cut(s)	242, 534
SfcI	CTRYAG	2 cut(s)	455, 617
SinI	GGWCC	1 cut(s)	778
Sse9I	AATT	6 cut(s)	415, 447, 505, 510, 608, 699
SsiI	CCGC	1 cut(s)	540
SspMI	CTAG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	676
TaiI	ACGT	1 cut(s)	498
TasI	AATT	6 cut(s)	415, 447, 505, 510, 608, 699
TatI	WGTACW	2 cut(s)	658, 694
TfiI	GAWTC	3 cut(s)	294, 424, 767
Tru1I	TTAA	2 cut(s)	224, 386
Tru9I	TTAA	2 cut(s)	224, 386
TscAI	CASTG	2 cut(s)	119, 126
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	5 cut(s)	117, 231, 457, 534, 771
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	119, 126
VpaK11BI	GGWCC	1 cut(s)	778
VspI	ATTAAT	1 cut(s)	386
XapI	RAATTY	3 cut(s)	447, 505, 699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.