Prupe.3G142900_v2.0.a1

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002825
Physical Location & Seq
Forward (+)
15462691 .. 15467953
5263 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G142900.2

Sequence Viewer

Length: 1140 bp
ATGGCGGAATGGGTTTGCAGAGCCCTTCGAGACGGTGCGTTGGAGGGAGAGCATGCACCCGCTCTCACAATCAAGGACTCTATAGCAACACCTCTCGGCTTCGACGCCTTCTGCCACGTTCTCTCCCAGCTCTCCACCAACATTTCAGCCGAAAAATCTCAGTCGCGAGCTCTGGTGCTCGTCGCGTTTTCTCGGAGTCCGTCATATTATGTAGACTTGTTGAAGAGGAGAGGACTGGATATTTCTTCTTCTCAGCAGTGGATTCGGATTTTGGATTGTTACACGGATCCTCTTGGTTGGAGAGAGAGGCTCATGGAGTGTGGAAGTGCTAAAAATCTCTCTTATGAAGCTTCCAACGTAGCTAGTACTTGCAGGAATGTGAAGGATGTGGACAAGTTGTTCTCTTCAGTTATTTCACTTGGAAAAGGATTGGTTGGACAAGGGAAAGTTCGTTTCAGTGTTGCAATAGACTCGGTAAATGAAATGTTAAGACATGCATCTTTGTCATCAGTTGCTGGCCTTTTGAGCAACCTTCGTTGCTGTGATCAAATTTCAAGTATCTTTTGGTTTCTTCATGCGGATCTTTGTGAAGAAAAGGTCACTGCTGTTATTGAATATATGTCCTCTATGGTGGCCAGCATAGAACCACTAATCCCGTTTGCAAATCGACATAGAGGTAACTCAGAGAATCTTTCTTTAGTTGAACGGAATTTTACAAAAGGGAAATTTCATGTCCGATGCAAACGTAGAAATGGACGTGTACGAGTGATGTTTGAAGAGATTCACATTGGGCAGTCAGGCATCGACTTCACATCCCCTTCATCTGAAGATGGATTAGTCAATCAAGTCAATCAAGGCCTTTTGCCAAAGGTGCAATTCAATCTACAACTGTCAGAGAAAGAGCGAAATGATAGGGCCAAAGTTGTACTTCCATTTGAACACCAAGGAAATGGTAAACCTGTAGAAATTTATGATGGTCGAAAATCTCTGCTGGATAGCAAAAATGAGGCAGCACCTGTTTCAACTGGGAATTCAAAAATTAATGATGACTCTAGCAAGGGTGAAATAATATATTTTCGTGATTCAGACGATGAGATGCCAGATTCTGATGAGGATCCTGATGATGATTTGGACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

380

Amino Acids

42.17

Weight (kDa)

5.5

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 213
AccII CGCG 2 cut(s) 166, 185
AciI CCGC 3 cut(s) 5, 60, 578
AclWI GGATC 5 cut(s) 281, 294, 588, 1109, 1122
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 5 cut(s) 549, 709, 725, 966, 1030
AcuI CTGAAG 2 cut(s) 390, 846
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 3 cut(s) 367, 762, 927
AflIII ACRYGT 1 cut(s) 757
AgsI TTSAA 9 cut(s) 223, 555, 614, 704, 776, 880, 938, 1023, 1035
AjiI CACGTC 1 cut(s) 758
AloI GAACNNNNNNTCC 4 cut(s) 383, 415, 636, 668
AluBI AGCT 4 cut(s) 130, 170, 350, 362
AluI AGCT 4 cut(s) 130, 170, 350, 362
Alw21I GWGCWC 2 cut(s) 172, 180
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 5 cut(s) 281, 294, 588, 1109, 1122
AlwNI CAGNNNCTG 3 cut(s) 515, 1016, 1106
AoxI GGCC 4 cut(s) 517, 633, 856, 915
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 5 cut(s) 549, 709, 725, 966, 1030
AseI ATTAAT 1 cut(s) 1041
Asp700I GAANNNNTTC 1 cut(s) 780
AspS9I GGNCC 1 cut(s) 915
AsuHPI GGTGA 1 cut(s) 1073
BalI TGGCCA 1 cut(s) 635
BamHI GGATCC 2 cut(s) 286, 1114
BanII GRGCYC 2 cut(s) 25, 172
Bbv12I GWGCWC 2 cut(s) 172, 180
BbvI GCAGC 1 cut(s) 1022
BccI CCATC 2 cut(s) 824, 968
BcgI CGANNNNNNTGC 4 cut(s) 245, 279, 453, 487
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 2 cut(s) 363, 1053
BfmI CTRYAG 2 cut(s) 81, 960
BisI GCNGC 1 cut(s) 1011
BlsI GCNGC 1 cut(s) 1012
BmcAI AGTACT 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 758
BmgT120I GGNCC 1 cut(s) 915
BmiI GGNNCC 2 cut(s) 288, 1116
BmrI ACTGGG 1 cut(s) 1035
BmsI GCATC 4 cut(s) 506, 728, 810, 1086
BmuI ACTGGG 1 cut(s) 1035
BplI GAGNNNNNCTC 2 cut(s) 294, 326
BsaBI GATNNNNATC 1 cut(s) 1113
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 943
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bse1I ACTGG 2 cut(s) 240, 1030
Bse8I GATNNNNATC 1 cut(s) 1113
BseDI CCNNGG 1 cut(s) 943
BseGI GGATG 2 cut(s) 391, 812
BseJI GATNNNNATC 1 cut(s) 1113
BseMII CTCAG 3 cut(s) 173, 266, 696
BseNI ACTGG 2 cut(s) 240, 1030
BseRI GAGGAG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 1022
BseYI CCCAGC 1 cut(s) 126
Bsh1236I CGCG 2 cut(s) 166, 185
BshFI GGCC 4 cut(s) 519, 635, 858, 917
BsiHKAI GWGCWC 2 cut(s) 172, 180
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsnI GGCC 4 cut(s) 519, 635, 858, 917
Bsp1286I GDGCHC 3 cut(s) 25, 172, 180
Bsp143I GATC 4 cut(s) 286, 544, 580, 1114
Bsp68I TCGCGA 1 cut(s) 166
BspACI CCGC 3 cut(s) 5, 60, 578
BspANI GGCC 4 cut(s) 519, 635, 858, 917
BspCNI CTCAG 3 cut(s) 172, 265, 695
BspFNI CGCG 2 cut(s) 166, 185
BspLI GGNNCC 2 cut(s) 288, 1116
BspPI GGATC 5 cut(s) 281, 294, 588, 1109, 1122
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 2 cut(s) 240, 1030
BssECI CCNNGG 1 cut(s) 943
BssMI GATC 4 cut(s) 286, 544, 580, 1114
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 943
Bst4CI ACNGT 2 cut(s) 35, 891
Bst6I CTCTTC 3 cut(s) 218, 409, 771
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 4 cut(s) 54, 168, 517, 637
BstDEI CTNAG 3 cut(s) 159, 252, 682
BstF5I GGATG 2 cut(s) 391, 812
BstFNI CGCG 2 cut(s) 166, 185
BstKTI GATC 4 cut(s) 289, 547, 583, 1117
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 4 cut(s) 286, 544, 580, 1114
BstMWI GCNNNNNNNGC 2 cut(s) 525, 871
BstNSI RCATGY 2 cut(s) 56, 497
BstSFI CTRYAG 2 cut(s) 81, 960
BstUI CGCG 2 cut(s) 166, 185
BstV1I GCAGC 1 cut(s) 1022
BstX2I RGATCY 3 cut(s) 286, 580, 1114
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 3 cut(s) 286, 580, 1114
BsuRI GGCC 4 cut(s) 519, 635, 858, 917
BtrI CACGTC 1 cut(s) 758
BtsCI GGATG 2 cut(s) 391, 812
BtsI GCAGTG 2 cut(s) 263, 600
BtsIMutI CAGTG 3 cut(s) 263, 463, 600
BtuMI TCGCGA 1 cut(s) 166
Cac8I GCNNGC 4 cut(s) 54, 168, 517, 637
CaiI CAGNNNCTG 3 cut(s) 515, 1016, 1106
Cfr13I GGNCC 1 cut(s) 915
CseI GACGC 1 cut(s) 113
Csp6I GTAC 3 cut(s) 366, 761, 926
CviAII CATG 5 cut(s) 53, 313, 494, 575, 731
CviQI GTAC 3 cut(s) 366, 761, 926
DdeI CTNAG 3 cut(s) 159, 252, 682
DpnI GATC 4 cut(s) 288, 546, 582, 1116
DpnII GATC 4 cut(s) 286, 544, 580, 1114
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 3 cut(s) 218, 409, 771
EarI CTCTTC 3 cut(s) 218, 409, 771
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 943
Eco147I AGGCCT 1 cut(s) 858
Eco24I GRGCYC 2 cut(s) 25, 172
Eco53kI GAGCTC 1 cut(s) 170
Eco57I CTGAAG 2 cut(s) 390, 846
EcoICRI GAGCTC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 1030
EcoT14I CCWWGG 1 cut(s) 943
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 25, 172
ErhI CCWWGG 1 cut(s) 943
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 5 cut(s) 56, 316, 497, 578, 734
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FatI CATG 5 cut(s) 52, 312, 493, 574, 730
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 544
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 1011
FokI GGATG 2 cut(s) 398, 799
FriOI GRGCYC 2 cut(s) 25, 172
Fsp4HI GCNGC 1 cut(s) 1011
FspBI CTAG 2 cut(s) 363, 1053
GluI GCNGC 1 cut(s) 1011
GsaI CCCAGC 1 cut(s) 130
HaeIII GGCC 4 cut(s) 519, 635, 858, 917
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 5 cut(s) 56, 316, 497, 578, 734
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 9 cut(s) 77, 196, 262, 470, 688, 781, 1049, 1082, 1103
HphI GGTGA 1 cut(s) 1073
Hpy166II GTNNAC 4 cut(s) 214, 391, 761, 956
Hpy188I TCNGA 8 cut(s) 195, 267, 685, 737, 826, 895, 1087, 1108
Hpy188III TCNNGA 4 cut(s) 29, 165, 1079, 1118
Hpy8I GTNNAC 4 cut(s) 214, 391, 761, 956
Hpy99I CGWCG 2 cut(s) 107, 185
HpyAV CCTTC 5 cut(s) 35, 118, 376, 542, 828
HpyCH4III ACNGT 2 cut(s) 35, 891
HpyCH4IV ACGT 4 cut(s) 117, 357, 745, 757
HpyCH4V TGCA 8 cut(s) 18, 56, 372, 464, 497, 662, 741, 874
HpyF10VI GCNNNNNNNGC 2 cut(s) 525, 871
HpyF3I CTNAG 3 cut(s) 159, 252, 682
HpySE526I ACGT 4 cut(s) 117, 357, 745, 757
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 5 cut(s) 56, 316, 497, 578, 734
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 4 cut(s) 286, 544, 580, 1114
Lsp1109I GCAGC 1 cut(s) 1022
LweI GCATC 4 cut(s) 506, 728, 810, 1086
MaeI CTAG 2 cut(s) 363, 1053
MaeII ACGT 4 cut(s) 117, 357, 745, 757
MaeIII GTNAC 3 cut(s) 278, 598, 677
MalI GATC 4 cut(s) 288, 546, 582, 1116
MbiI CCGCTC 1 cut(s) 62
MboI GATC 4 cut(s) 286, 544, 580, 1114
MboII GAAGA 8 cut(s) 235, 237, 240, 396, 563, 602, 788, 839
MflI RGATCY 3 cut(s) 286, 580, 1114
MhlI GDGCHC 3 cut(s) 25, 172, 180
MlsI TGGCCA 1 cut(s) 635
MluCI AATT 7 cut(s) 549, 709, 725, 875, 966, 1030, 1038
MluNI TGGCCA 1 cut(s) 635
MlyI GAGTC 4 cut(s) 71, 205, 464, 1043
MmeI TCCRAC 4 cut(s) 21, 278, 378, 415
Mox20I TGGCCA 1 cut(s) 635
Mph1103I ATGCAT 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 780
MscI TGGCCA 1 cut(s) 635
MseI TTAA 2 cut(s) 488, 1041
Msp20I TGGCCA 1 cut(s) 635
MvnI CGCG 2 cut(s) 166, 185
MwoI GCNNNNNNNGC 2 cut(s) 525, 871
NdeII GATC 4 cut(s) 286, 544, 580, 1114
NlaIII CATG 5 cut(s) 56, 316, 497, 578, 734
NlaIV GGNNCC 2 cut(s) 288, 1116
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 598
NruI TCGCGA 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 2 cut(s) 56, 497
PaeI GCATGC 1 cut(s) 56
PceI AGGCCT 1 cut(s) 858
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 5 cut(s) 262, 688, 781, 1082, 1103
PkrI GCNGC 1 cut(s) 1012
PleI GAGTC 4 cut(s) 71, 204, 464, 1043
PpsI GAGTC 4 cut(s) 71, 204, 464, 1043
PshBI ATTAAT 1 cut(s) 1041
Psp124BI GAGCTC 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 288, 1116
PspPI GGNCC 1 cut(s) 915
PstNI CAGNNNCTG 3 cut(s) 515, 1016, 1106
PsuI RGATCY 3 cut(s) 286, 580, 1114
RruI TCGCGA 1 cut(s) 166
RsaI GTAC 3 cut(s) 367, 762, 927
RsaNI GTAC 3 cut(s) 366, 761, 926
SacI GAGCTC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 488, 1041
SatI GCNGC 1 cut(s) 1011
Sau3AI GATC 4 cut(s) 286, 544, 580, 1114
Sau96I GGNCC 1 cut(s) 915
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 4 cut(s) 71, 205, 464, 1043
SduI GDGCHC 3 cut(s) 25, 172, 180
SfaNI GCATC 4 cut(s) 506, 728, 810, 1086
SfcI CTRYAG 2 cut(s) 81, 960
SphI GCATGC 1 cut(s) 56
Sse9I AATT 7 cut(s) 549, 709, 725, 875, 966, 1030, 1038
SseBI AGGCCT 1 cut(s) 858
SsiI CCGC 3 cut(s) 5, 60, 578
SspMI CTAG 2 cut(s) 363, 1053
SstI GAGCTC 1 cut(s) 172
StuI AGGCCT 1 cut(s) 858
StyI CCWWGG 1 cut(s) 943
TaaI ACNGT 2 cut(s) 35, 891
TaiI ACGT 4 cut(s) 120, 360, 748, 760
TaqI TCGA 5 cut(s) 28, 102, 667, 804, 979
TasI AATT 7 cut(s) 549, 709, 725, 875, 966, 1030, 1038
TatI WGTACW 2 cut(s) 365, 925
TfiI GAWTC 5 cut(s) 262, 688, 781, 1082, 1103
Tru1I TTAA 2 cut(s) 488, 1041
Tru9I TTAA 2 cut(s) 488, 1041
TscAI CASTG 3 cut(s) 263, 463, 607
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 1010
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 5 cut(s) 360, 495, 563, 719, 810
TspGWI ACGGA 3 cut(s) 189, 299, 721
TspRI CASTG 3 cut(s) 263, 463, 607
VspI ATTAAT 1 cut(s) 1041
XapI RAATTY 5 cut(s) 549, 709, 725, 966, 1030
XceI RCATGY 2 cut(s) 56, 497
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 2 cut(s) 363, 1053
ZrmI AGTACT 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.