RLG00000029647

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002825
Physical Location & Seq
Reverse (-)
42001535 .. 42005191
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029647

Sequence Viewer

Length: 1188 bp
ATGGCGGCGGAATGGATTTGTAGAGCACTTCGAGACGGAGCGTTGGAAGGCGAGCACGCGCCGGCTCTTACAATAAAGGACTCCATGGCCTCACCTCTAGGCTTCGACATCTTCACTCACTTCCTCTCTCACCACTCCACCAATATCTCTGCCGGCAAATCTCAATCGCGAGGTCTCGTGCTCGTCGCGTTTTCTCGGAGTCCCTCGTTTTACTTGGACCTGTTGAGCAAGAGGGGACTTCCTATTGCTTCGCCTCACCACTGGATTCGGATTCTTGATTGTTACACGGATCCTCTTGGTTGGAAGGATCAGATGGGGCAGTGTGGGAGTGCGACCAAACTCTCTTATGACATAGCTAGTATTTGTGGGAATGTCAAGGATGTGGATAGTCTCTTATCTTTGATTATTTCACTTGGAAGAGGATTTGTTGTACAAGAGAAAGTTCGCTTTTGTGTTGCAATAGACTCAGTAAATGAAATGTTAAGATATGCATCCTTGTCATCAGTTGCTGGCCTTATAAGCAGTCTTCGTTGCTGTGATCAGATTTCAAGCATCTTTTGGTTTTGTCATGCGGATCTTTGTGAAGAAAGGGCAACTTCTACTCTTGAATATATGTCATCTATGGTGGCCAGCATTGAGCCATTAATCCAGTTTGCAAATGGACAAAGAAGTAATTCAGAGAATCTTTCTTTACTTGATCAAAATTTTACTAGAGGGAAACTTCATCTCCGGTGCAAGCGGAGAAATGGACGTGTACGAGTGATGTTTGAAGAAATTCACCTTGGGCAGTCAGGCATCAACTTTACATCCACTTCATTAGAAGATGGAATAATCAATCAAGGACTTGTTCCCAAGGTGCAATTTAGTCTACAACTATCAGAGAAAGAGCTAAAGGATAGGGCTAATGTTGTACTTCCATTTGAACACCAAGGAAATGGTAAACCTGTACAAATTTATGATGGGCGAAAATCTCTTACGGATAGCAAGTATGAGAAGACGAAATGCCAGATTCTGATGAGGACCCTGATGATGATTTGGACATATAGTGTTTTCCCATTCGCAATGGTGGTCAATGGTGCTCTGCAGCTTCATCATCAGTTCATTTGCCAACAATCTGTTCTCGAGCAATATTTCGTCATACTTCTGTCTACACATTGGGCTTTTTGTATCCTGGTGTCTCATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

396

Amino Acids

44.3

Weight (kDa)

7.94

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elong_Iki1 PF10483 147 - 307 4.3e-11 Elongator subunit Iki1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
AccI GTMKAC 2 cut(s) 868, 1148
AccII CGCG 3 cut(s) 59, 169, 188
AciI CCGC 4 cut(s) 5, 8, 572, 739
AclWI GGATC 4 cut(s) 284, 297, 315, 582
AcoI YGGCCR 1 cut(s) 627
AcsI RAATTY 3 cut(s) 703, 774, 951
AfaI GTAC 4 cut(s) 432, 756, 912, 948
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 4 cut(s) 549, 608, 770, 923
AjiI CACGTC 1 cut(s) 752
AjnI CCWGG 1 cut(s) 1170
AjuI GAANNNNNNNTTGG 4 cut(s) 765, 797, 1101, 1133
AluBI AGCT 3 cut(s) 356, 889, 1087
AluI AGCT 3 cut(s) 356, 889, 1087
Alw21I GWGCWC 4 cut(s) 28, 57, 183, 1081
Alw26I GTCTC 4 cut(s) 27, 179, 395, 1182
AlwI GGATC 4 cut(s) 284, 297, 315, 582
AlwNI CAGNNNCTG 2 cut(s) 509, 1012
Ama87I CYCGRG 1 cut(s) 1121
AoxI GGCC 3 cut(s) 87, 511, 627
ApeKI GCWGC 1 cut(s) 1084
ApoI RAATTY 3 cut(s) 703, 774, 951
AseI ATTAAT 1 cut(s) 644
Asp700I GAANNNNTTC 2 cut(s) 673, 774
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 217, 1020
AsuHPI GGTGA 4 cut(s) 84, 122, 248, 770
AvaI CYCGRG 1 cut(s) 1121
AvaII GGWCC 2 cut(s) 217, 1020
BalI TGGCCA 1 cut(s) 629
BamHI GGATCC 1 cut(s) 289
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 2 cut(s) 518, 1001
Bbv12I GWGCWC 4 cut(s) 28, 57, 183, 1081
BbvI GCAGC 1 cut(s) 1096
BccI CCATC 3 cut(s) 307, 818, 953
BciT130I CCWGG 1 cut(s) 1172
BciVI GTATCC 1 cut(s) 1178
BclI TGATCA 2 cut(s) 538, 697
BcoDI GTCTC 4 cut(s) 27, 179, 395, 1182
BfaI CTAG 3 cut(s) 98, 357, 711
BfmI CTRYAG 1 cut(s) 1082
BfuI GTATCC 1 cut(s) 1178
BisI GCNGC 2 cut(s) 6, 1085
BlsI GCNGC 2 cut(s) 7, 1086
Bme1390I CCNGG 1 cut(s) 1172
Bme18I GGWCC 2 cut(s) 217, 1020
BmeT110I CYCGRG 1 cut(s) 1121
BmgBI CACGTC 1 cut(s) 752
BmgT120I GGNCC 2 cut(s) 217, 1020
BmiI GGNNCC 2 cut(s) 291, 1022
BmrFI CCNGG 1 cut(s) 1172
BmsI GCATC 3 cut(s) 500, 561, 804
BpiI GAAGAC 2 cut(s) 518, 1001
BsaBI GATNNNNATC 1 cut(s) 490
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 4 cut(s) 84, 781, 852, 928
BsaWI WCCGGW 1 cut(s) 729
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bse118I RCCGGY 2 cut(s) 61, 152
Bse1I ACTGG 2 cut(s) 266, 649
Bse3DI GCAATG 1 cut(s) 1068
Bse8I GATNNNNATC 1 cut(s) 490
BseBI CCWGG 1 cut(s) 1172
BseDI CCNNGG 4 cut(s) 84, 781, 852, 928
BseGI GGATG 3 cut(s) 385, 491, 806
BseJI GATNNNNATC 1 cut(s) 490
BseMI GCAATG 1 cut(s) 1068
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 2 cut(s) 266, 649
BseXI GCAGC 1 cut(s) 1096
Bsh1236I CGCG 3 cut(s) 59, 169, 188
BshFI GGCC 3 cut(s) 89, 513, 629
BsiHKAI GWGCWC 4 cut(s) 28, 57, 183, 1081
BsiHKCI CYCGRG 1 cut(s) 1121
BsiSI CCGG 3 cut(s) 62, 153, 730
BslFI GGGAC 2 cut(s) 186, 249
BsmAI GTCTC 4 cut(s) 27, 179, 395, 1182
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 186, 249
BsnI GGCC 3 cut(s) 89, 513, 629
Bso31I GGTCTC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 1121
Bsp1286I GDGCHC 4 cut(s) 28, 57, 183, 1081
Bsp1407I TGTACA 2 cut(s) 430, 946
Bsp143I GATC 5 cut(s) 289, 307, 538, 574, 697
Bsp19I CCATGG 1 cut(s) 84
Bsp68I TCGCGA 1 cut(s) 169
BspACI CCGC 4 cut(s) 5, 8, 572, 739
BspANI GGCC 3 cut(s) 89, 513, 629
BspCNI CTCAG 1 cut(s) 479
BspFNI CGCG 3 cut(s) 59, 169, 188
BspHI TCATGA 1 cut(s) 1184
BspLI GGNNCC 2 cut(s) 291, 1022
BspMAI CTGCAG 1 cut(s) 1086
BspPI GGATC 4 cut(s) 284, 297, 315, 582
BspTNI GGTCTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 1068
BsrFI RCCGGY 2 cut(s) 61, 152
BsrGI TGTACA 2 cut(s) 430, 946
BsrI ACTGG 2 cut(s) 266, 649
BssAI RCCGGY 2 cut(s) 61, 152
BssECI CCNNGG 4 cut(s) 84, 781, 852, 928
BssMI GATC 5 cut(s) 289, 307, 538, 574, 697
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 4 cut(s) 84, 781, 852, 928
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 1172
Bst6I CTCTTC 1 cut(s) 412
BstAUI TGTACA 2 cut(s) 430, 946
BstC8I GCNNGC 7 cut(s) 53, 57, 63, 154, 511, 631, 737
BstDEI CTNAG 1 cut(s) 466
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 3 cut(s) 385, 491, 806
BstFNI CGCG 3 cut(s) 59, 169, 188
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 5 cut(s) 292, 310, 541, 577, 700
BstMAI GTCTC 4 cut(s) 27, 179, 395, 1182
BstMBI GATC 5 cut(s) 289, 307, 538, 574, 697
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstNI CCWGG 1 cut(s) 1172
BstSCI CCNGG 1 cut(s) 1170
BstSFI CTRYAG 1 cut(s) 1082
BstUI CGCG 3 cut(s) 59, 169, 188
BstV1I GCAGC 1 cut(s) 1096
BstV2I GAAGAC 2 cut(s) 518, 1001
BstX2I RGATCY 2 cut(s) 289, 574
BstXI CCANNNNNNTGG 1 cut(s) 935
BstYI RGATCY 2 cut(s) 289, 574
BsuI GTATCC 1 cut(s) 1178
BsuRI GGCC 3 cut(s) 89, 513, 629
BtgI CCRYGG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 752
BtsCI GGATG 3 cut(s) 385, 491, 806
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 259, 326
BtuMI TCGCGA 1 cut(s) 169
Cac8I GCNNGC 7 cut(s) 53, 57, 63, 154, 511, 631, 737
CaiI CAGNNNCTG 2 cut(s) 509, 1012
CciI TCATGA 1 cut(s) 1184
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 2 cut(s) 61, 152
Cfr13I GGNCC 2 cut(s) 217, 1020
Csp6I GTAC 4 cut(s) 431, 755, 911, 947
CviAII CATG 3 cut(s) 85, 569, 1185
CviQI GTAC 4 cut(s) 431, 755, 911, 947
DdeI CTNAG 1 cut(s) 466
DpnI GATC 5 cut(s) 291, 309, 540, 576, 699
DpnII GATC 5 cut(s) 289, 307, 538, 574, 697
EaeI YGGCCR 1 cut(s) 627
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 4 cut(s) 84, 781, 852, 928
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 217, 1020
Eco88I CYCGRG 1 cut(s) 1121
EcoO109I RGGNCCY 1 cut(s) 1020
EcoRII CCWGG 1 cut(s) 1170
EcoT14I CCWWGG 4 cut(s) 84, 781, 852, 928
EcoT22I ATGCAT 1 cut(s) 493
ErhI CCWWGG 4 cut(s) 84, 781, 852, 928
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 3 cut(s) 88, 572, 1188
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FaqI GGGAC 2 cut(s) 186, 249
FatI CATG 3 cut(s) 84, 568, 1184
FbaI TGATCA 2 cut(s) 538, 697
FblI GTMKAC 2 cut(s) 868, 1148
Fnu4HI GCNGC 2 cut(s) 6, 1085
FokI GGATG 3 cut(s) 392, 478, 793
Fsp4HI GCNGC 2 cut(s) 6, 1085
FspBI CTAG 3 cut(s) 98, 357, 711
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 6, 1085
HaeIII GGCC 3 cut(s) 89, 513, 629
HapII CCGG 3 cut(s) 62, 153, 730
HhaI GCGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 88, 572, 1188
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 7 cut(s) 80, 199, 265, 271, 464, 682, 1009
HpaII CCGG 3 cut(s) 62, 153, 730
HphI GGTGA 4 cut(s) 84, 122, 248, 770
Hpy166II GTNNAC 4 cut(s) 755, 869, 941, 1149
Hpy188I TCNGA 7 cut(s) 198, 270, 312, 543, 679, 880, 1014
Hpy188III TCNNGA 6 cut(s) 32, 168, 275, 605, 1121, 1185
Hpy8I GTNNAC 4 cut(s) 755, 869, 941, 1149
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 41, 298
HpyCH4IV ACGT 1 cut(s) 751
HpyCH4V TGCA 6 cut(s) 458, 491, 656, 735, 859, 1084
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpyF3I CTNAG 1 cut(s) 466
HpySE526I ACGT 1 cut(s) 751
Hsp92II CATG 3 cut(s) 88, 572, 1188
HspAI GCGC 1 cut(s) 59
KroI GCCGGC 2 cut(s) 61, 152
KroNI GCCGGC 2 cut(s) 63, 154
Ksp22I TGATCA 2 cut(s) 538, 697
Kzo9I GATC 5 cut(s) 289, 307, 538, 574, 697
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 1 cut(s) 1096
LweI GCATC 3 cut(s) 500, 561, 804
MaeI CTAG 3 cut(s) 98, 357, 711
MaeII ACGT 1 cut(s) 751
MaeIII GTNAC 1 cut(s) 281
MalI GATC 5 cut(s) 291, 309, 540, 576, 699
MboI GATC 5 cut(s) 289, 307, 538, 574, 697
MboII GAAGA 7 cut(s) 103, 429, 518, 596, 782, 833, 1006
MflI RGATCY 2 cut(s) 289, 574
MhlI GDGCHC 4 cut(s) 28, 57, 183, 1081
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 5 cut(s) 673, 703, 774, 860, 951
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 3 cut(s) 74, 208, 458
MmeI TCCRAC 2 cut(s) 24, 281
Mox20I TGGCCA 1 cut(s) 629
Mph1103I ATGCAT 1 cut(s) 493
MroNI GCCGGC 2 cut(s) 61, 152
MroXI GAANNNNTTC 2 cut(s) 673, 774
MscI TGGCCA 1 cut(s) 629
MseI TTAA 2 cut(s) 482, 644
Msp20I TGGCCA 1 cut(s) 629
MspI CCGG 3 cut(s) 62, 153, 730
MspR9I CCNGG 1 cut(s) 1172
MvaI CCWGG 1 cut(s) 1172
MvnI CGCG 3 cut(s) 59, 169, 188
MwoI GCNNNNNNNGC 1 cut(s) 519
NaeI GCCGGC 2 cut(s) 63, 154
NcoI CCATGG 1 cut(s) 84
NdeII GATC 5 cut(s) 289, 307, 538, 574, 697
NgoMIV GCCGGC 2 cut(s) 61, 152
NlaIII CATG 3 cut(s) 88, 572, 1188
NlaIV GGNNCC 2 cut(s) 291, 1022
NruI TCGCGA 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 1121
PagI TCATGA 1 cut(s) 1184
PdiI GCCGGC 2 cut(s) 63, 154
PdmI GAANNNNTTC 2 cut(s) 673, 774
PfeI GAWTC 4 cut(s) 265, 271, 682, 1009
PkrI GCNGC 2 cut(s) 7, 1086
PleI GAGTC 3 cut(s) 74, 207, 458
PpsI GAGTC 3 cut(s) 74, 207, 458
PpuMI RGGWCCY 1 cut(s) 1020
PshBI ATTAAT 1 cut(s) 644
PsiI TTATAA 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 1020
Psp6I CCWGG 1 cut(s) 1170
PspGI CCWGG 1 cut(s) 1170
PspN4I GGNNCC 2 cut(s) 291, 1022
PspPI GGNCC 2 cut(s) 217, 1020
PspPPI RGGWCCY 1 cut(s) 1020
PstI CTGCAG 1 cut(s) 1086
PstNI CAGNNNCTG 2 cut(s) 509, 1012
PsuI RGATCY 2 cut(s) 289, 574
RruI TCGCGA 1 cut(s) 169
RsaI GTAC 4 cut(s) 432, 756, 912, 948
RsaNI GTAC 4 cut(s) 431, 755, 911, 947
SaqAI TTAA 2 cut(s) 482, 644
SatI GCNGC 2 cut(s) 6, 1085
Sau3AI GATC 5 cut(s) 289, 307, 538, 574, 697
Sau96I GGNCC 2 cut(s) 217, 1020
SchI GAGTC 3 cut(s) 74, 208, 458
ScrFI CCNGG 1 cut(s) 1172
SduI GDGCHC 4 cut(s) 28, 57, 183, 1081
SfaNI GCATC 3 cut(s) 500, 561, 804
SfcI CTRYAG 1 cut(s) 1082
Sfr274I CTCGAG 1 cut(s) 1121
SinI GGWCC 2 cut(s) 217, 1020
SlaI CTCGAG 1 cut(s) 1121
SmlI CTYRAG 1 cut(s) 1121
SmoI CTYRAG 1 cut(s) 1121
Sse9I AATT 5 cut(s) 673, 703, 774, 860, 951
SsiI CCGC 4 cut(s) 5, 8, 572, 739
SspI AATATT 1 cut(s) 1130
SspMI CTAG 3 cut(s) 98, 357, 711
StyD4I CCNGG 1 cut(s) 1170
StyI CCWWGG 4 cut(s) 84, 781, 852, 928
TaiI ACGT 1 cut(s) 754
TaqI TCGA 3 cut(s) 31, 105, 1122
TasI AATT 5 cut(s) 673, 703, 774, 860, 951
TatI WGTACW 3 cut(s) 430, 910, 946
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 265, 271, 682, 1009
Tru1I TTAA 2 cut(s) 482, 644
Tru9I TTAA 2 cut(s) 482, 644
TscAI CASTG 2 cut(s) 266, 326
TseI GCWGC 1 cut(s) 1084
TspDTI ATGAA 6 cut(s) 489, 713, 804, 1079, 1090, 1173
TspGWI ACGGA 3 cut(s) 51, 302, 992
TspRI CASTG 2 cut(s) 266, 326
VpaK11BI GGWCC 2 cut(s) 217, 1020
VspI ATTAAT 1 cut(s) 644
XapI RAATTY 3 cut(s) 703, 774, 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XhoI CTCGAG 1 cut(s) 1121
XmiI GTMKAC 2 cut(s) 868, 1148
XmnI GAANNNNTTC 2 cut(s) 673, 774
XspI CTAG 3 cut(s) 98, 357, 711
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.