FvH4_4g11350

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002825
Physical Location & Seq
Forward (+)
15106172 .. 15111502
5331 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11350.t3

Sequence Viewer

Length: 1101 bp
ATGGCGGCGGAATGGATTTGCAGAGCAGTTCGAGACGGAGCCTTGGAAGGCGAGCACGCGCCGGCTCTAACAATAAAAGACACCATGGCCTCCCCTCTCGGCTTCCACGTCTTCACCCACTTCCTCTCTCAACAGTCCACCAATATCTCCGCCGCAAAATCTCAGTCACGAGGTCTCGTCCTCGTCGCGCTTTCCCGGAGTCCCTCGTTTTACTTGGATTTGTTGAGCAACAAGGGACTTGATACTGCTTCGTTGAGCAACAAGATCCGGATTCTTGATTGTTACTCGGATCCTCTCGGATGGAGGGCCCACCATCTGTCTGATGACATAGCTGGTATTTCTGGGAATGTCAAGGATGTAGATGCTCTTTTCTCTTCGGTTATTTCACTTGGAACAGGGCTTGTAGGACAAGGGAAAGATCGCTTTTGTGTTGCAATAGACTCGGTAAATGAAATGTTAAGATATGCATCGTTGTCATCAGTTTCTGGTCTGATAAGCAGTCTTCGTTGCTGTGGCCAGATTTCAAGCATCTTTTGGTTGTGTCATGCGGATCTTTGTGAAGAAAGGGTAACTTCTGCTCTTGAATATATGTCATCTATGGTGGCCAGCATTGAGCCATTAATCCAGTTTGCAAATGGACAAAGAAGTAATTCAGAGAATCTTTCTTTACGTGATCAAAGTTTTACTAAAGGGAAACTTCATCTCCATTGCAAGCGTAGAAATGGACGTGTCCGAGTCATGTTTGAAGAAATTCACATTGGGCAGTCAGGCATCAACTTTACATCCATTTCATCTGAAGGCGAACTAATCAATCAAGGTCTTGTGCCCAAGGTGCAATTTAGTTTACAACTATCAGAGAAAGAGCTGAAGGATAGGGCTAATGTTGTTCTTCCATTTGAACACCAAGGTAATGGCAAACCTGTACAAATTTATGATGGGCGAAAATCTCTTACAGATAGCAAGTATGAGGTACTTCCCGTACAGAATGGGAATTCAGATATAGATAAGGAGTCTAGCAAAGGAGAAATAATATATTTTCGCGATTCAGAAGACGAAATGCCAGATTCTGATGAGGACCCTGATGACGATTTGGACATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

367

Amino Acids

40.28

Weight (kDa)

5.18

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elong_Iki1 PF10483 139 - 299 4.1e-11 Elongator subunit Iki1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 59, 188, 1041
AccIII TCCGGA 1 cut(s) 267
AciI CCGC 5 cut(s) 5, 8, 150, 153, 548
AclWI GGATC 4 cut(s) 259, 284, 297, 558
AcoI YGGCCR 2 cut(s) 514, 603
AcsI RAATTY 3 cut(s) 750, 927, 991
AcuI CTGAAG 2 cut(s) 816, 887
AfaI GTAC 3 cut(s) 924, 972, 981
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 4 cut(s) 525, 584, 746, 899
AjiI CACGTC 2 cut(s) 109, 728
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
AluBI AGCT 2 cut(s) 332, 865
AluI AGCT 2 cut(s) 332, 865
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 27, 179
AlwI GGATC 4 cut(s) 259, 284, 297, 558
AlwNI CAGNNNCTG 2 cut(s) 485, 1067
Aor13HI TCCGGA 1 cut(s) 267
AoxI GGCC 4 cut(s) 87, 306, 514, 603
ApaI GGGCCC 1 cut(s) 310
ApoI RAATTY 3 cut(s) 750, 927, 991
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AseI ATTAAT 1 cut(s) 620
Asp700I GAANNNNTTC 2 cut(s) 649, 750
AspLEI GCGC 2 cut(s) 61, 190
AspS9I GGNCC 3 cut(s) 306, 307, 1075
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 1075
BaeGI GKGCMC 2 cut(s) 310, 828
BalI TGGCCA 2 cut(s) 516, 605
BamHI GGATCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 310
BauI CACGAG 1 cut(s) 168
BbsI GAAGAC 3 cut(s) 103, 494, 1056
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 3 cut(s) 294, 321, 929
BcgI CGANNNNNNTGC 2 cut(s) 423, 457
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 27, 179
BfaI CTAG 1 cut(s) 1014
BisI GCNGC 2 cut(s) 6, 153
BlsI GCNGC 2 cut(s) 7, 154
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 1075
BmgBI CACGTC 2 cut(s) 109, 728
BmgT120I GGNCC 3 cut(s) 306, 307, 1075
BmiI GGNNCC 4 cut(s) 40, 291, 308, 1077
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 4 cut(s) 352, 476, 537, 780
BpiI GAAGAC 3 cut(s) 103, 494, 1056
BpuMI CCSGG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 671
BsaBI GATNNNNATC 1 cut(s) 466
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 4 cut(s) 42, 84, 828, 904
BsaWI WCCGGW 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 687, 717
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 625
Bse3DI GCAATG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 466
BseAI TCCGGA 1 cut(s) 267
BseDI CCNNGG 4 cut(s) 42, 84, 828, 904
BseGI GGATG 3 cut(s) 305, 361, 782
BseJI GATNNNNATC 1 cut(s) 466
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 625
BseSI GKGCMC 2 cut(s) 310, 828
Bsh1236I CGCG 3 cut(s) 59, 188, 1041
BshFI GGCC 4 cut(s) 89, 308, 516, 605
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 3 cut(s) 62, 196, 268
BslFI GGGAC 2 cut(s) 186, 249
BsmAI GTCTC 2 cut(s) 27, 179
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 186, 249
BsnI GGCC 4 cut(s) 89, 308, 516, 605
Bso31I GGTCTC 1 cut(s) 179
Bsp120I GGGCCC 1 cut(s) 306
Bsp1286I GDGCHC 3 cut(s) 57, 310, 828
Bsp13I TCCGGA 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 922
Bsp143I GATC 5 cut(s) 264, 289, 418, 550, 673
Bsp19I CCATGG 1 cut(s) 84
Bsp68I TCGCGA 1 cut(s) 1041
BspACI CCGC 5 cut(s) 5, 8, 150, 153, 548
BspANI GGCC 4 cut(s) 89, 308, 516, 605
BspCNI CTCAG 1 cut(s) 175
BspEI TCCGGA 1 cut(s) 267
BspFNI CGCG 3 cut(s) 59, 188, 1041
BspLI GGNNCC 4 cut(s) 40, 291, 308, 1077
BspPI GGATC 4 cut(s) 259, 284, 297, 558
BspTNI GGTCTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 706
BsrFI RCCGGY 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 922
BsrI ACTGG 1 cut(s) 625
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 4 cut(s) 42, 84, 828, 904
BssMI GATC 5 cut(s) 264, 289, 418, 550, 673
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 4 cut(s) 42, 84, 828, 904
Bst2BI CACGAG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 379
BstAUI TGTACA 1 cut(s) 922
BstBAI YACGTR 1 cut(s) 671
BstC8I GCNNGC 5 cut(s) 53, 57, 63, 607, 713
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 3 cut(s) 305, 361, 782
BstFNI CGCG 3 cut(s) 59, 188, 1041
BstHHI GCGC 2 cut(s) 61, 190
BstKTI GATC 5 cut(s) 267, 292, 421, 553, 676
BstMAI GTCTC 2 cut(s) 27, 179
BstMBI GATC 5 cut(s) 264, 289, 418, 550, 673
BstMWI GCNNNNNNNGC 1 cut(s) 832
BstSCI CCNGG 1 cut(s) 194
BstSLI GKGCMC 2 cut(s) 310, 828
BstUI CGCG 3 cut(s) 59, 188, 1041
BstV2I GAAGAC 3 cut(s) 103, 494, 1056
BstX2I RGATCY 3 cut(s) 264, 289, 550
BstXI CCANNNNNNTGG 1 cut(s) 911
BstYI RGATCY 3 cut(s) 264, 289, 550
BsuRI GGCC 4 cut(s) 89, 308, 516, 605
BtgI CCRYGG 1 cut(s) 84
BtrI CACGTC 2 cut(s) 109, 728
BtsCI GGATG 3 cut(s) 305, 361, 782
BtuMI TCGCGA 1 cut(s) 1041
Cac8I GCNNGC 5 cut(s) 53, 57, 63, 607, 713
CaiI CAGNNNCTG 2 cut(s) 485, 1067
CfoI GCGC 2 cut(s) 61, 190
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 306, 307, 1075
Csp6I GTAC 3 cut(s) 923, 971, 980
CviAII CATG 3 cut(s) 85, 545, 739
CviQI GTAC 3 cut(s) 923, 971, 980
DdeI CTNAG 1 cut(s) 162
DpnI GATC 5 cut(s) 266, 291, 420, 552, 675
DpnII GATC 5 cut(s) 264, 289, 418, 550, 673
EaeI YGGCCR 2 cut(s) 514, 603
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
EciI GGCGGA 2 cut(s) 23, 139
Eco130I CCWWGG 4 cut(s) 42, 84, 828, 904
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 1075
Eco57I CTGAAG 2 cut(s) 816, 887
EcoO109I RGGNCCY 2 cut(s) 306, 1075
EcoRI GAATTC 1 cut(s) 991
EcoT14I CCWWGG 4 cut(s) 42, 84, 828, 904
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 4 cut(s) 42, 84, 828, 904
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 3 cut(s) 88, 548, 742
FalI AAGNNNNNCTT 4 cut(s) 556, 588, 681, 713
FaqI GGGAC 2 cut(s) 186, 249
FatI CATG 3 cut(s) 84, 544, 738
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 2 cut(s) 6, 153
FokI GGATG 3 cut(s) 312, 368, 769
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 2 cut(s) 6, 153
FspBI CTAG 1 cut(s) 1014
GlaI GCGC 2 cut(s) 60, 189
GluI GCNGC 2 cut(s) 6, 153
HaeIII GGCC 4 cut(s) 89, 308, 516, 605
HapII CCGG 3 cut(s) 62, 196, 268
HhaI GCGC 2 cut(s) 61, 190
Hin1II CATG 3 cut(s) 88, 548, 742
Hin6I GCGC 2 cut(s) 59, 188
HinP1I GCGC 2 cut(s) 59, 188
HinfI GANTC 8 cut(s) 199, 271, 440, 658, 735, 1010, 1043, 1064
HpaII CCGG 3 cut(s) 62, 196, 268
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 138, 845
Hpy188III TCNNGA 6 cut(s) 32, 168, 268, 275, 581, 1040
Hpy8I GTNNAC 2 cut(s) 138, 845
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 41, 791, 862
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 3 cut(s) 108, 670, 727
HpyCH4V TGCA 6 cut(s) 21, 434, 467, 632, 711, 835
HpyF10VI GCNNNNNNNGC 1 cut(s) 832
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 3 cut(s) 108, 670, 727
Hsp92II CATG 3 cut(s) 88, 548, 742
HspAI GCGC 2 cut(s) 59, 188
Kpn2I TCCGGA 1 cut(s) 267
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 5 cut(s) 264, 289, 418, 550, 673
LmnI GCTCC 1 cut(s) 38
LweI GCATC 4 cut(s) 352, 476, 537, 780
MaeI CTAG 1 cut(s) 1014
MaeII ACGT 3 cut(s) 108, 670, 727
MaeIII GTNAC 3 cut(s) 165, 281, 568
MalI GATC 5 cut(s) 266, 291, 420, 552, 675
MboI GATC 5 cut(s) 264, 289, 418, 550, 673
MboII GAAGA 7 cut(s) 103, 366, 494, 572, 758, 881, 1061
MflI RGATCY 3 cut(s) 264, 289, 550
MhlI GDGCHC 3 cut(s) 57, 310, 828
MlsI TGGCCA 2 cut(s) 516, 605
MluCI AATT 5 cut(s) 649, 750, 836, 927, 991
MluNI TGGCCA 2 cut(s) 516, 605
MlyI GAGTC 4 cut(s) 208, 434, 744, 1019
Mox20I TGGCCA 2 cut(s) 516, 605
Mph1103I ATGCAT 1 cut(s) 469
MroI TCCGGA 1 cut(s) 267
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 2 cut(s) 649, 750
MscI TGGCCA 2 cut(s) 516, 605
MseI TTAA 2 cut(s) 458, 620
Msp20I TGGCCA 2 cut(s) 516, 605
MspI CCGG 3 cut(s) 62, 196, 268
MspR9I CCNGG 1 cut(s) 196
MvnI CGCG 3 cut(s) 59, 188, 1041
MwoI GCNNNNNNNGC 1 cut(s) 832
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 84
NdeII GATC 5 cut(s) 264, 289, 418, 550, 673
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 3 cut(s) 88, 548, 742
NlaIV GGNNCC 4 cut(s) 40, 291, 308, 1077
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 165
NruI TCGCGA 1 cut(s) 1041
NsiI ATGCAT 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 2 cut(s) 649, 750
PfeI GAWTC 4 cut(s) 271, 658, 1043, 1064
PfoI TCCNGGA 1 cut(s) 194
PkrI GCNGC 2 cut(s) 7, 154
PleI GAGTC 4 cut(s) 207, 434, 743, 1018
PpsI GAGTC 4 cut(s) 207, 434, 743, 1018
Ppu21I YACGTR 1 cut(s) 671
PpuMI RGGWCCY 1 cut(s) 1075
PshBI ATTAAT 1 cut(s) 620
Psp5II RGGWCCY 1 cut(s) 1075
PspN4I GGNNCC 4 cut(s) 40, 291, 308, 1077
PspOMI GGGCCC 1 cut(s) 306
PspPI GGNCC 3 cut(s) 306, 307, 1075
PspPPI RGGWCCY 1 cut(s) 1075
PstNI CAGNNNCTG 2 cut(s) 485, 1067
PsuI RGATCY 3 cut(s) 264, 289, 550
RruI TCGCGA 1 cut(s) 1041
RsaI GTAC 3 cut(s) 924, 972, 981
RsaNI GTAC 3 cut(s) 923, 971, 980
SaqAI TTAA 2 cut(s) 458, 620
SatI GCNGC 2 cut(s) 6, 153
Sau3AI GATC 5 cut(s) 264, 289, 418, 550, 673
Sau96I GGNCC 3 cut(s) 306, 307, 1075
SchI GAGTC 4 cut(s) 208, 434, 744, 1019
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 3 cut(s) 57, 310, 828
SfaNI GCATC 4 cut(s) 352, 476, 537, 780
SinI GGWCC 1 cut(s) 1075
Sse9I AATT 5 cut(s) 649, 750, 836, 927, 991
SsiI CCGC 5 cut(s) 5, 8, 150, 153, 548
SspMI CTAG 1 cut(s) 1014
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 4 cut(s) 42, 84, 828, 904
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 3 cut(s) 111, 673, 730
TaqI TCGA 1 cut(s) 31
TasI AATT 5 cut(s) 649, 750, 836, 927, 991
TatI WGTACW 1 cut(s) 922
TauI GCSGC 2 cut(s) 8, 155
TfiI GAWTC 4 cut(s) 271, 658, 1043, 1064
Tru1I TTAA 2 cut(s) 458, 620
Tru9I TTAA 2 cut(s) 458, 620
TseFI GTSAC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 3 cut(s) 465, 689, 780
TspGWI ACGGA 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 1075
VspI ATTAAT 1 cut(s) 620
XapI RAATTY 3 cut(s) 750, 927, 991
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmnI GAANNNNTTC 2 cut(s) 649, 750
XspI CTAG 1 cut(s) 1014
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.