Rw1G010560

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002825
Physical Location & Seq
Reverse (-)
23686352 .. 23690675
4324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010560.1

Sequence Viewer

Length: 1125 bp
ATGGCGGCGGAATGGATTTGCAGAGCACTTCGAGACGGAGCTTTGGAAGGCGAGCACGCGCCGGCTCTTACAATAAAGGACTTCATGGCCTCACCTCTAGGCTTCGACGTCTTCACTCACTTCCTCTCTCACCACTTCACCAATATCTCTGCCGGCAAATCTCAATCGCGAGGTCTCGTGCTCGTCGCATTTTCACGGAGTCCCTCGTTTTACTTGGACTTGTTGAGCAAGAGGGGACTTCCTATTGCTTCGTCTCACCACTGGATTCGGATTCTTGATTGTTACACAGATCCTCTTGGTTGGAAGGATCAGATGGGGCAGTGTGGGAGTGCGACCAAACTCTCTTATGACATAGCTAGTATTTGTGGGAATGTGAAGGATGTGGGTAGTCTCTTCTCTTTGATTATTTCACTTGGAAGAGGATTTGTTGTACAAGGGAAAGTTCGCTTTTGTGTTGCAATAGACTCAGTAAATGAATTGTTAAGATATGCATCCTTGTCATCAGTTGCTGGCCTTATAAGCAGTCTTCGTTGCTGTGATCAGATTTCAAGCATCTTTTGGTTTTGTCATGCGGATCTTTGTGAAGAAAGGGCAACTTCTACTCTTGAATATATGTCATCTATGGTGGCCAGCATTGAGCCATTAATCCAGTTTGCAAATGGACAAAGAAGTAATTCAGAGAATCTTTCTTTACTTGATCAAAATTTTACTAGAGGGAAACTTCATCTCCGGTGCAAGCGGAGAAATGGACGTGTACGAGTGATGTTTGAAGAAATTCACCTTGGGCAGTCAGGCATCAACTTTACATCCACTTCATTTGAAGGTGGAGTAATCAATCAAGGTCTTGTTCCCAAGGTGCAATTTAGTCTACAACTATCAGAGAAAGAGCTAAAGGATAGGGCTAATGTTGTACTTCCATTTGAACACCAAGGAAATGGTAAATCTGTACAAATTTATGATGGGCGAAAATCTCTTACGGATAGGAAGTATGAGGTAGCTCCCATACCAAACGGGATTTCAGATATAGATAAGGAGTCTGGCAAGGGAGAAATAATATATTTTCGCGATTCAGAAGACGAAATGCCAGATTCTGATGAGGACCCTGATGATGATTTGGACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

374

Amino Acids

41.54

Weight (kDa)

5.62

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elong_Iki1 PF10483 148 - 307 8e-11 Elongator subunit Iki1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
AatII GACGTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 868
AccII CGCG 3 cut(s) 59, 169, 1065
AciI CCGC 4 cut(s) 5, 8, 572, 739
AclWI GGATC 3 cut(s) 284, 315, 582
AcoI YGGCCR 1 cut(s) 627
AcsI RAATTY 3 cut(s) 703, 774, 951
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 4 cut(s) 432, 756, 912, 948
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 5 cut(s) 549, 608, 770, 821, 923
AjiI CACGTC 1 cut(s) 752
AjuI GAANNNNNNNTTGG 4 cut(s) 765, 797, 1000, 1032
AluBI AGCT 4 cut(s) 41, 356, 889, 998
AluI AGCT 4 cut(s) 41, 356, 889, 998
Alw21I GWGCWC 3 cut(s) 28, 57, 183
Alw26I GTCTC 4 cut(s) 27, 179, 258, 395
AlwI GGATC 3 cut(s) 284, 315, 582
AlwNI CAGNNNCTG 2 cut(s) 509, 1091
AoxI GGCC 3 cut(s) 87, 511, 627
ApoI RAATTY 3 cut(s) 703, 774, 951
AseI ATTAAT 1 cut(s) 644
Asp700I GAANNNNTTC 2 cut(s) 673, 774
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 1099
AsuHPI GGTGA 5 cut(s) 84, 122, 130, 248, 770
AvaII GGWCC 1 cut(s) 1099
BalI TGGCCA 1 cut(s) 629
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 3 cut(s) 103, 518, 1080
Bbv12I GWGCWC 3 cut(s) 28, 57, 183
BccI CCATC 2 cut(s) 307, 953
BclI TGATCA 2 cut(s) 538, 697
BcoDI GTCTC 4 cut(s) 27, 179, 258, 395
BfaI CTAG 3 cut(s) 98, 357, 711
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 1099
BmgBI CACGTC 1 cut(s) 752
BmgT120I GGNCC 1 cut(s) 1099
BmiI GGNNCC 1 cut(s) 1101
BmsI GCATC 3 cut(s) 500, 561, 804
BpiI GAAGAC 3 cut(s) 103, 518, 1080
BsaBI GATNNNNATC 1 cut(s) 490
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 3 cut(s) 781, 852, 928
BsaWI WCCGGW 1 cut(s) 729
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bse118I RCCGGY 2 cut(s) 61, 152
Bse1I ACTGG 2 cut(s) 266, 649
Bse8I GATNNNNATC 1 cut(s) 490
BseDI CCNNGG 3 cut(s) 781, 852, 928
BseGI GGATG 3 cut(s) 385, 491, 806
BseJI GATNNNNATC 1 cut(s) 490
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 2 cut(s) 266, 649
Bsh1236I CGCG 3 cut(s) 59, 169, 1065
BshFI GGCC 3 cut(s) 89, 513, 629
BsiHKAI GWGCWC 3 cut(s) 28, 57, 183
BsiSI CCGG 3 cut(s) 62, 153, 730
BslFI GGGAC 2 cut(s) 186, 249
BsmAI GTCTC 4 cut(s) 27, 179, 258, 395
BsmBI CGTCTC 2 cut(s) 27, 258
BsmFI GGGAC 2 cut(s) 186, 249
BsnI GGCC 3 cut(s) 89, 513, 629
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 28, 57, 183
Bsp1407I TGTACA 2 cut(s) 430, 946
Bsp143I GATC 5 cut(s) 289, 307, 538, 574, 697
Bsp68I TCGCGA 2 cut(s) 169, 1065
BspACI CCGC 4 cut(s) 5, 8, 572, 739
BspANI GGCC 3 cut(s) 89, 513, 629
BspCNI CTCAG 1 cut(s) 479
BspFNI CGCG 3 cut(s) 59, 169, 1065
BspLI GGNNCC 1 cut(s) 1101
BspPI GGATC 3 cut(s) 284, 315, 582
BspTNI GGTCTC 1 cut(s) 179
BsrFI RCCGGY 2 cut(s) 61, 152
BsrGI TGTACA 2 cut(s) 430, 946
BsrI ACTGG 2 cut(s) 266, 649
BssAI RCCGGY 2 cut(s) 61, 152
BssECI CCNNGG 3 cut(s) 781, 852, 928
BssMI GATC 5 cut(s) 289, 307, 538, 574, 697
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 3 cut(s) 781, 852, 928
Bst2BI CACGAG 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 398, 412
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 2 cut(s) 430, 946
BstC8I GCNNGC 7 cut(s) 53, 57, 63, 154, 511, 631, 737
BstDEI CTNAG 1 cut(s) 466
BstF5I GGATG 3 cut(s) 385, 491, 806
BstFNI CGCG 3 cut(s) 59, 169, 1065
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 5 cut(s) 292, 310, 541, 577, 700
BstMAI GTCTC 4 cut(s) 27, 179, 258, 395
BstMBI GATC 5 cut(s) 289, 307, 538, 574, 697
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstUI CGCG 3 cut(s) 59, 169, 1065
BstV2I GAAGAC 3 cut(s) 103, 518, 1080
BstX2I RGATCY 2 cut(s) 289, 574
BstXI CCANNNNNNTGG 1 cut(s) 935
BstYI RGATCY 2 cut(s) 289, 574
BsuRI GGCC 3 cut(s) 89, 513, 629
BtrI CACGTC 1 cut(s) 752
BtsCI GGATG 3 cut(s) 385, 491, 806
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 259, 326
BtuMI TCGCGA 2 cut(s) 169, 1065
Cac8I GCNNGC 7 cut(s) 53, 57, 63, 154, 511, 631, 737
CaiI CAGNNNCTG 2 cut(s) 509, 1091
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 2 cut(s) 61, 152
Cfr13I GGNCC 1 cut(s) 1099
Csp6I GTAC 4 cut(s) 431, 755, 911, 947
CspCI CAANNNNNGTGG 2 cut(s) 799, 834
CviAII CATG 2 cut(s) 85, 569
CviQI GTAC 4 cut(s) 431, 755, 911, 947
DdeI CTNAG 1 cut(s) 466
DpnI GATC 5 cut(s) 291, 309, 540, 576, 699
DpnII GATC 5 cut(s) 289, 307, 538, 574, 697
EaeI YGGCCR 1 cut(s) 627
Eam1104I CTCTTC 2 cut(s) 398, 412
EarI CTCTTC 2 cut(s) 398, 412
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 3 cut(s) 781, 852, 928
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 1099
EcoO109I RGGNCCY 1 cut(s) 1099
EcoT14I CCWWGG 3 cut(s) 781, 852, 928
EcoT22I ATGCAT 1 cut(s) 493
ErhI CCWWGG 3 cut(s) 781, 852, 928
Esp3I CGTCTC 2 cut(s) 27, 258
FaeI CATG 2 cut(s) 88, 572
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FaqI GGGAC 2 cut(s) 186, 249
FatI CATG 2 cut(s) 84, 568
FbaI TGATCA 2 cut(s) 538, 697
FblI GTMKAC 1 cut(s) 868
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 392, 478, 793
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 98, 357, 711
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 3 cut(s) 89, 513, 629
HapII CCGG 3 cut(s) 62, 153, 730
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 88, 572
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 8 cut(s) 199, 265, 271, 464, 682, 1034, 1067, 1088
HpaII CCGG 3 cut(s) 62, 153, 730
HphI GGTGA 5 cut(s) 84, 122, 130, 248, 770
Hpy166II GTNNAC 2 cut(s) 755, 869
Hpy188I TCNGA 8 cut(s) 270, 312, 543, 679, 880, 1021, 1072, 1093
Hpy188III TCNNGA 5 cut(s) 32, 168, 275, 605, 1064
Hpy8I GTNNAC 2 cut(s) 755, 869
Hpy99I CGWCG 2 cut(s) 110, 188
HpyAV CCTTC 4 cut(s) 41, 298, 370, 815
HpyCH4IV ACGT 2 cut(s) 108, 751
HpyCH4V TGCA 6 cut(s) 21, 458, 491, 656, 735, 859
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpyF3I CTNAG 1 cut(s) 466
HpySE526I ACGT 2 cut(s) 108, 751
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 88, 572
HspAI GCGC 1 cut(s) 59
KroI GCCGGC 2 cut(s) 61, 152
KroNI GCCGGC 2 cut(s) 63, 154
Ksp22I TGATCA 2 cut(s) 538, 697
Kzo9I GATC 5 cut(s) 289, 307, 538, 574, 697
LmnI GCTCC 2 cut(s) 38, 1003
LweI GCATC 3 cut(s) 500, 561, 804
MaeI CTAG 3 cut(s) 98, 357, 711
MaeII ACGT 2 cut(s) 108, 751
MaeIII GTNAC 1 cut(s) 281
MalI GATC 5 cut(s) 291, 309, 540, 576, 699
MboI GATC 5 cut(s) 289, 307, 538, 574, 697
MboII GAAGA 7 cut(s) 103, 385, 429, 518, 596, 782, 1085
MflI RGATCY 2 cut(s) 289, 574
MhlI GDGCHC 3 cut(s) 28, 57, 183
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 6 cut(s) 476, 673, 703, 774, 860, 951
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 3 cut(s) 208, 458, 1043
MmeI TCCRAC 1 cut(s) 281
Mox20I TGGCCA 1 cut(s) 629
Mph1103I ATGCAT 1 cut(s) 493
MroNI GCCGGC 2 cut(s) 61, 152
MroXI GAANNNNTTC 2 cut(s) 673, 774
MscI TGGCCA 1 cut(s) 629
MseI TTAA 2 cut(s) 482, 644
Msp20I TGGCCA 1 cut(s) 629
MspI CCGG 3 cut(s) 62, 153, 730
MvnI CGCG 3 cut(s) 59, 169, 1065
MwoI GCNNNNNNNGC 1 cut(s) 519
NaeI GCCGGC 2 cut(s) 63, 154
NdeII GATC 5 cut(s) 289, 307, 538, 574, 697
NgoMIV GCCGGC 2 cut(s) 61, 152
NlaIII CATG 2 cut(s) 88, 572
NlaIV GGNNCC 1 cut(s) 1101
NruI TCGCGA 2 cut(s) 169, 1065
NsiI ATGCAT 1 cut(s) 493
PdiI GCCGGC 2 cut(s) 63, 154
PdmI GAANNNNTTC 2 cut(s) 673, 774
PfeI GAWTC 5 cut(s) 265, 271, 682, 1067, 1088
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 3 cut(s) 207, 458, 1042
PpsI GAGTC 3 cut(s) 207, 458, 1042
PpuMI RGGWCCY 1 cut(s) 1099
PshBI ATTAAT 1 cut(s) 644
PsiI TTATAA 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 1099
PspN4I GGNNCC 1 cut(s) 1101
PspPI GGNCC 1 cut(s) 1099
PspPPI RGGWCCY 1 cut(s) 1099
PstNI CAGNNNCTG 2 cut(s) 509, 1091
PsuI RGATCY 2 cut(s) 289, 574
RruI TCGCGA 2 cut(s) 169, 1065
RsaI GTAC 4 cut(s) 432, 756, 912, 948
RsaNI GTAC 4 cut(s) 431, 755, 911, 947
SaqAI TTAA 2 cut(s) 482, 644
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 289, 307, 538, 574, 697
Sau96I GGNCC 1 cut(s) 1099
SchI GAGTC 3 cut(s) 208, 458, 1043
SduI GDGCHC 3 cut(s) 28, 57, 183
SfaNI GCATC 3 cut(s) 500, 561, 804
SinI GGWCC 1 cut(s) 1099
Sse9I AATT 6 cut(s) 476, 673, 703, 774, 860, 951
SsiI CCGC 4 cut(s) 5, 8, 572, 739
SspMI CTAG 3 cut(s) 98, 357, 711
StyI CCWWGG 3 cut(s) 781, 852, 928
TaiI ACGT 2 cut(s) 111, 754
TaqI TCGA 2 cut(s) 31, 105
TasI AATT 6 cut(s) 476, 673, 703, 774, 860, 951
TatI WGTACW 3 cut(s) 430, 910, 946
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 5 cut(s) 265, 271, 682, 1067, 1088
Tru1I TTAA 2 cut(s) 482, 644
Tru9I TTAA 2 cut(s) 482, 644
TscAI CASTG 2 cut(s) 266, 326
TspDTI ATGAA 4 cut(s) 73, 489, 713, 804
TspGWI ACGGA 3 cut(s) 51, 211, 992
TspRI CASTG 2 cut(s) 266, 326
VpaK11BI GGWCC 1 cut(s) 1099
VspI ATTAAT 1 cut(s) 644
XapI RAATTY 3 cut(s) 703, 774, 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XmiI GTMKAC 1 cut(s) 868
XmnI GAANNNNTTC 2 cut(s) 673, 774
XspI CTAG 3 cut(s) 98, 357, 711
ZraI GACGTC 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.