AT2G19220
MYB Family

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
8340678 .. 8342161
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19220.1

Sequence Viewer

Length: 1320 bp
ATGACGTCCAAAGCCGCATGGGAACCTGAACACGACGAAGTATTTGTGGACTTATGCGTCGAGCAAAAGATGTTGGGGAATCAACCTGAAATGCAACATATATTGGAAGCTTTTCAAGAAATGGGTGTGCGGTTCACCATAGACCAGCTTATAAATCATTGGGATACAATGATCAAGCAGTGGAAGATTTGGTGTAGACTTGTTCAATGCAAAGATATCAAATGGGATTCCTTGACAAACACGTTTGGTGCCACTGATCAAGAATGGGCCAACTATTTAGAGGTGAATCCTGAGGCTGGGCAGTATCGGTGTAATCCCCCCTTGTTCCTCGAGAAACTAGAGATTATCTTTGCAGGTATGAACTTAGATGGTGAAGGTACTTCTTCAGGTAGCAAAATGAAGCAAATATGTGAGCATCGTGATGAAGAAAATGTTACTGGATATGTACCTAGGCTAAGCGCGTCTGATATCGCGACTCGTCGTCATTATAAGTGGTCACCATCCTCACATGCGATTGTTGTGGACACGTGTTTCCAAGAGTCTTTAAAAGGAATCAGACCAATCAAACGTAACCATCTTTTTACAAAGGAAAGTTGGAAAATGATTCTTGAGAAAATCAATCGGATCACAGGACTAGGATACACACATAAGCAGCTCGAAAACCACTTCACACGTACCAGGACATCTTGGAAGCACTGGTGTGAAACTATTGCCTCTCCCATCATGAAGTGGGATGCCAATACTCGCAAGTTTGGTGCAACCGAAGAGGACTGGGATAAATACTTGATGATAAATAAAAGAGCTCGAGTCTTCAAAAGGAGACATATTCCTCATGCTGATAAACTGGCAACCATCTTCAAAGGACGTATCGAACCTGGAAAAACCAAAACCCGCCGTTATCGCAAGAGAGTGATCGATCATCATTCAGAATCACCACAGCTACATGATCATCAACCAACTCCATCATCAGTAGTAGTCAACACAAACGAGCCAGTCAAAGGAAGTGACGATAGAGCGGAGGATGGCAATGTGGAGCCTACTTCACTGATTAGGTCAGACTCAGAGGATGTTGCTGAAACTGTAACTCCCGAGATGATGGAGAAGATTCCAGTGAATGCATCGGTCAAGAAGAAGGAGAAGTTTACCTTTGAGGAATGCGTGGAGTGTTTGGATGCCATAGAAGAGGTTGAGAAAGGCGGTGATCTATACATGTTTGCCTTGGATTTGTTTAAGACCAAAGACTACAGATATCTCTTCTTGATGTTGCAGAAATCAAGTTTGAGGATGGCTTGGCTGCTAAAGCTTCTATCAAACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

439

Amino Acids

51.24

Weight (kDa)

6.98

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 7 - 92 4.7e-22 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 164 - 261 1.1e-27 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 152, 489
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 1016
AccI GTMKAC 1 cut(s) 196
AccII CGCG 2 cut(s) 461, 473
AciI CCGC 5 cut(s) 15, 130, 892, 1016, 1197
AclWI GGATC 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 369
AcvI CACGTG 1 cut(s) 528
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 379, 447, 676
AfiI CCNNNNNNNGG 2 cut(s) 296, 998
AflIII ACRYGT 5 cut(s) 240, 525, 527, 671, 1209
AgsI TTSAA 4 cut(s) 116, 206, 814, 859
AhdI GACNNNNNGTC 1 cut(s) 480
AjnI CCWGG 2 cut(s) 677, 874
AleI CACNNNNGTG 1 cut(s) 699
AluBI AGCT 6 cut(s) 110, 148, 655, 803, 940, 1303
AluI AGCT 6 cut(s) 110, 148, 655, 803, 940, 1303
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 1 cut(s) 814
AlwI GGATC 1 cut(s) 632
Ama87I CYCGRG 3 cut(s) 329, 804, 1088
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 652, 1294
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
Asp700I GAANNNNTTC 1 cut(s) 111
AspA2I CCTAGG 1 cut(s) 449
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 6 cut(s) 127, 295, 383, 489, 924, 1211
AvaI CYCGRG 3 cut(s) 329, 804, 1088
AvrII CCTAGG 1 cut(s) 449
AxyI CCTNAGG 1 cut(s) 291
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 805
BbrPI CACGTG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 802
Bbv12I GWGCWC 1 cut(s) 805
BbvI GCAGC 2 cut(s) 664, 1281
BccI CCATC 9 cut(s) 362, 508, 582, 728, 860, 970, 1016, 1090, 1279
BceAI ACGGC 1 cut(s) 879
BciT130I CCWGG 2 cut(s) 679, 876
BciVI GTATCC 2 cut(s) 157, 632
BclI TGATCA 3 cut(s) 171, 256, 946
BcoDI GTCTC 1 cut(s) 814
BfaI CTAG 3 cut(s) 338, 450, 635
BfmI CTRYAG 1 cut(s) 1243
BfuAI ACCTGC 1 cut(s) 344
BfuI GTATCC 2 cut(s) 157, 632
BisI GCNGC 3 cut(s) 15, 653, 1295
BlnI CCTAGG 1 cut(s) 449
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 3 cut(s) 16, 654, 1296
Bme1390I CCNGG 2 cut(s) 679, 876
BmeRI GACNNNNNGTC 1 cut(s) 480
BmeT110I CYCGRG 3 cut(s) 329, 804, 1088
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 3 cut(s) 24, 250, 1035
BmrFI CCNGG 2 cut(s) 679, 876
BmrI ACTGGG 1 cut(s) 781
BmsI GCATC 4 cut(s) 424, 724, 1127, 1162
BmuI ACTGGG 1 cut(s) 781
BpiI GAAGAC 1 cut(s) 802
Bpu1102I GCTNAGC 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 629
Bsa29I ATCGAT 1 cut(s) 915
BsaAI YACGTR 2 cut(s) 528, 674
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 449, 1218
BsaXI ACNNNNNCTCC 2 cut(s) 1069, 1099
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 998
Bse1I ACTGG 6 cut(s) 442, 701, 776, 849, 992, 1109
Bse21I CCTNAGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 1033
BseBI CCWGG 2 cut(s) 679, 876
BseCI ATCGAT 1 cut(s) 915
BseDI CCNNGG 2 cut(s) 449, 1218
BseGI GGATG 6 cut(s) 500, 739, 1027, 1072, 1177, 1290
BseLI CCNNNNNNNGG 2 cut(s) 296, 998
BseMI GCAATG 1 cut(s) 1033
BseMII CTCAG 2 cut(s) 282, 1074
BseNI ACTGG 6 cut(s) 442, 701, 776, 849, 992, 1109
BseXI GCAGC 2 cut(s) 664, 1281
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 2 cut(s) 461, 473
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 248
BshVI ATCGAT 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 805
BsiHKCI CYCGRG 3 cut(s) 329, 804, 1088
BslI CCNNNNNNNGG 2 cut(s) 296, 998
BsmAI GTCTC 1 cut(s) 814
BsmI GAATGC 2 cut(s) 1120, 1160
BsnI GGCC 1 cut(s) 269
BsoBI CYCGRG 3 cut(s) 329, 804, 1088
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 7 cut(s) 171, 256, 624, 912, 916, 946, 1201
Bsp1720I GCTNAGC 1 cut(s) 455
Bsp68I TCGCGA 1 cut(s) 473
BspACI CCGC 5 cut(s) 15, 130, 892, 1016, 1197
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 2 cut(s) 283, 1073
BspDI ATCGAT 1 cut(s) 915
BspFNI CGCG 2 cut(s) 461, 473
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 3 cut(s) 24, 250, 1035
BspMI ACCTGC 1 cut(s) 344
BspPI GGATC 1 cut(s) 632
BspT107I GGYRCC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 1016
BsrDI GCAATG 1 cut(s) 1033
BsrI ACTGG 6 cut(s) 442, 701, 776, 849, 992, 1109
BssECI CCNNGG 2 cut(s) 449, 1218
BssMI GATC 7 cut(s) 171, 256, 624, 912, 916, 946, 1201
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 449, 1218
Bst2UI CCWGG 2 cut(s) 679, 876
Bst4CI ACNGT 1 cut(s) 1081
Bst6I CTCTTC 3 cut(s) 759, 1176, 1259
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 2 cut(s) 528, 674
BstDEI CTNAG 4 cut(s) 291, 364, 455, 1060
BstEII GGTNACC 1 cut(s) 495
BstF5I GGATG 6 cut(s) 500, 739, 1027, 1072, 1177, 1290
BstFNI CGCG 2 cut(s) 461, 473
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 7 cut(s) 174, 259, 627, 915, 919, 949, 1204
BstMAI GTCTC 1 cut(s) 814
BstMBI GATC 7 cut(s) 171, 256, 624, 912, 916, 946, 1201
BstMWI GCNNNNNNNGC 2 cut(s) 900, 1300
BstNI CCWGG 2 cut(s) 679, 876
BstNSI RCATGY 2 cut(s) 512, 1213
BstPI GGTNACC 1 cut(s) 495
BstSCI CCNGG 2 cut(s) 677, 874
BstSFI CTRYAG 1 cut(s) 1243
BstUI CGCG 2 cut(s) 461, 473
BstV1I GCAGC 2 cut(s) 664, 1281
BstV2I GAAGAC 1 cut(s) 802
Bsu15I ATCGAT 1 cut(s) 915
Bsu36I CCTNAGG 1 cut(s) 291
BsuI GTATCC 2 cut(s) 157, 632
BsuRI GGCC 1 cut(s) 269
BsuTUI ATCGAT 1 cut(s) 915
BtsCI GGATG 6 cut(s) 500, 739, 1027, 1072, 1177, 1290
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 5 cut(s) 185, 252, 694, 1043, 1116
BtuMI TCGCGA 1 cut(s) 473
BveI ACCTGC 1 cut(s) 344
CciI TCATGA 1 cut(s) 723
CfoI GCGC 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 267
ClaI ATCGAT 1 cut(s) 915
CseI GACGC 2 cut(s) 46, 450
Csp6I GTAC 3 cut(s) 378, 446, 675
CviAII CATG 6 cut(s) 18, 509, 724, 833, 944, 1210
CviQI GTAC 3 cut(s) 378, 446, 675
DdeI CTNAG 4 cut(s) 291, 364, 455, 1060
DpnI GATC 7 cut(s) 173, 258, 626, 914, 918, 948, 1203
DpnII GATC 7 cut(s) 171, 256, 624, 912, 916, 946, 1201
DraI TTTAAA 1 cut(s) 546
DrdI GACNNNNNNGTC 1 cut(s) 56
DriI GACNNNNNGTC 1 cut(s) 480
DseDI GACNNNNNNGTC 1 cut(s) 56
Eam1104I CTCTTC 3 cut(s) 759, 1176, 1259
Eam1105I GACNNNNNGTC 1 cut(s) 480
EarI CTCTTC 3 cut(s) 759, 1176, 1259
Ecl136II GAGCTC 1 cut(s) 803
Eco130I CCWWGG 2 cut(s) 449, 1218
Eco24I GRGCYC 1 cut(s) 805
Eco32I GATATC 3 cut(s) 217, 469, 1250
Eco53kI GAGCTC 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 369
Eco72I CACGTG 1 cut(s) 528
Eco81I CCTNAGG 1 cut(s) 291
Eco88I CYCGRG 3 cut(s) 329, 804, 1088
Eco91I GGTNACC 1 cut(s) 495
EcoICRI GAGCTC 1 cut(s) 803
EcoO65I GGTNACC 1 cut(s) 495
EcoRII CCWGG 2 cut(s) 677, 874
EcoRV GATATC 3 cut(s) 217, 469, 1250
EcoT14I CCWWGG 2 cut(s) 449, 1218
EcoT22I ATGCAT 1 cut(s) 1120
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 449, 1218
FaeI CATG 6 cut(s) 21, 512, 727, 836, 947, 1213
FalI AAGNNNNNCTT 2 cut(s) 1130, 1162
FatI CATG 6 cut(s) 17, 508, 723, 832, 943, 1209
FauI CCCGC 1 cut(s) 899
FbaI TGATCA 3 cut(s) 171, 256, 946
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 15, 653, 1295
FokI GGATG 6 cut(s) 487, 746, 1034, 1079, 1184, 1297
FriOI GRGCYC 1 cut(s) 805
Fsp4HI GCNGC 3 cut(s) 15, 653, 1295
FspBI CTAG 3 cut(s) 338, 450, 635
GlaI GCGC 1 cut(s) 460
GluI GCNGC 3 cut(s) 15, 653, 1295
GsaI CCCAGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 269
HgaI GACGC 2 cut(s) 46, 450
HhaI GCGC 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 21, 512, 727, 836, 947, 1213
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HindIII AAGCTT 2 cut(s) 108, 1301
HphI GGTGA 6 cut(s) 127, 295, 383, 489, 924, 1211
Hpy166II GTNNAC 6 cut(s) 49, 135, 197, 523, 979, 1143
Hpy188I TCNGA 6 cut(s) 466, 557, 624, 928, 1057, 1063
Hpy8I GTNNAC 6 cut(s) 49, 135, 197, 523, 979, 1143
Hpy99I CGWCG 3 cut(s) 38, 62, 483
HpyAV CCTTC 2 cut(s) 368, 1126
HpyCH4III ACNGT 1 cut(s) 1081
HpyCH4IV ACGT 6 cut(s) 5, 242, 527, 568, 673, 865
HpyCH4V TGCA 6 cut(s) 94, 210, 353, 758, 1118, 1267
HpyF10VI GCNNNNNNNGC 2 cut(s) 900, 1300
HpyF3I CTNAG 4 cut(s) 291, 364, 455, 1060
HpySE526I ACGT 6 cut(s) 5, 242, 527, 568, 673, 865
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 21, 512, 727, 836, 947, 1213
HspAI GCGC 1 cut(s) 459
Ksp22I TGATCA 3 cut(s) 171, 256, 946
Kzo9I GATC 7 cut(s) 171, 256, 624, 912, 916, 946, 1201
LmnI GCTCC 1 cut(s) 1033
Lsp1109I GCAGC 2 cut(s) 664, 1281
LweI GCATC 4 cut(s) 424, 724, 1127, 1162
MaeI CTAG 3 cut(s) 338, 450, 635
MaeII ACGT 6 cut(s) 5, 242, 527, 568, 673, 865
MaeIII GTNAC 5 cut(s) 433, 495, 569, 1004, 1081
MalI GATC 7 cut(s) 173, 258, 626, 914, 918, 948, 1203
MbiI CCGCTC 1 cut(s) 1016
MboI GATC 7 cut(s) 171, 256, 624, 912, 916, 946, 1201
MhlI GDGCHC 1 cut(s) 805
MlyI GAGTC 4 cut(s) 469, 548, 816, 1052
MmeI TCCRAC 1 cut(s) 575
Mph1103I ATGCAT 1 cut(s) 1120
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 3 cut(s) 545, 1230, 1318
MslI CAYNNNNRTG 2 cut(s) 420, 699
MspR9I CCNGG 2 cut(s) 679, 876
Mva1269I GAATGC 2 cut(s) 1120, 1160
MvaI CCWGG 2 cut(s) 679, 876
MvnI CGCG 2 cut(s) 461, 473
MwoI GCNNNNNNNGC 2 cut(s) 900, 1300
NdeII GATC 7 cut(s) 171, 256, 624, 912, 916, 946, 1201
NlaIII CATG 6 cut(s) 21, 512, 727, 836, 947, 1213
NlaIV GGNNCC 3 cut(s) 24, 250, 1035
NmuCI GTSAC 2 cut(s) 495, 1004
NruI TCGCGA 1 cut(s) 473
NsiI ATGCAT 1 cut(s) 1120
NspI RCATGY 2 cut(s) 512, 1213
OliI CACNNNNGTG 1 cut(s) 699
PaeR7I CTCGAG 2 cut(s) 329, 804
PagI TCATGA 1 cut(s) 723
PciI ACATGT 1 cut(s) 1209
PctI GAATGC 2 cut(s) 1120, 1160
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 7 cut(s) 79, 227, 286, 552, 604, 929, 1105
PkrI GCNGC 3 cut(s) 16, 654, 1296
PleI GAGTC 4 cut(s) 469, 547, 815, 1052
PmaCI CACGTG 1 cut(s) 528
PmlI CACGTG 1 cut(s) 528
PpsI GAGTC 4 cut(s) 469, 547, 815, 1052
Ppu21I YACGTR 2 cut(s) 528, 674
PscI ACATGT 1 cut(s) 1209
PsiI TTATAA 2 cut(s) 152, 489
Psp124BI GAGCTC 1 cut(s) 805
Psp6I CCWGG 2 cut(s) 677, 874
PspCI CACGTG 1 cut(s) 528
PspEI GGTNACC 1 cut(s) 495
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 2 cut(s) 677, 874
PspN4I GGNNCC 3 cut(s) 24, 250, 1035
PspPI GGNCC 1 cut(s) 267
PspXI VCTCGAGB 1 cut(s) 804
RruI TCGCGA 1 cut(s) 473
RsaI GTAC 3 cut(s) 379, 447, 676
RsaNI GTAC 3 cut(s) 378, 446, 675
RseI CAYNNNNRTG 2 cut(s) 420, 699
SacI GAGCTC 1 cut(s) 805
SaqAI TTAA 3 cut(s) 545, 1230, 1318
SatI GCNGC 3 cut(s) 15, 653, 1295
Sau3AI GATC 7 cut(s) 171, 256, 624, 912, 916, 946, 1201
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 4 cut(s) 469, 548, 816, 1052
ScrFI CCNGG 2 cut(s) 679, 876
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 4 cut(s) 424, 724, 1127, 1162
SfcI CTRYAG 1 cut(s) 1243
Sfr274I CTCGAG 2 cut(s) 329, 804
SlaI CTCGAG 2 cut(s) 329, 804
SmiMI CAYNNNNRTG 2 cut(s) 420, 699
SmlI CTYRAG 3 cut(s) 329, 608, 804
SmoI CTYRAG 3 cut(s) 329, 608, 804
SsiI CCGC 5 cut(s) 15, 130, 892, 1016, 1197
SspMI CTAG 3 cut(s) 338, 450, 635
SstI GAGCTC 1 cut(s) 805
StyD4I CCNGG 2 cut(s) 677, 874
StyI CCWWGG 2 cut(s) 449, 1218
TaaI ACNGT 1 cut(s) 1081
TaiI ACGT 6 cut(s) 8, 245, 530, 571, 676, 868
TaqI TCGA 6 cut(s) 60, 330, 657, 805, 870, 915
TaqII GACCGA 1 cut(s) 1111
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 7 cut(s) 79, 227, 286, 552, 604, 929, 1105
Tru1I TTAA 3 cut(s) 545, 1230, 1318
Tru9I TTAA 3 cut(s) 545, 1230, 1318
TscAI CASTG 5 cut(s) 185, 259, 701, 1050, 1116
TseFI GTSAC 2 cut(s) 495, 1004
TseI GCWGC 2 cut(s) 652, 1294
Tsp45I GTSAC 2 cut(s) 495, 1004
TspDTI ATGAA 4 cut(s) 374, 413, 438, 740
TspRI CASTG 5 cut(s) 185, 259, 701, 1050, 1116
XceI RCATGY 2 cut(s) 512, 1213
XhoI CTCGAG 2 cut(s) 329, 804
XmaJI CCTAGG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 3 cut(s) 338, 450, 635
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.