Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001482.1

Orthogroup ID

OG0006444

Physical Location & Seq

Genomic Coordinates Reverse (-)

85019 .. 86644

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001482.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

atgcttggctcatcaaccccgaaagctacgtggtcgcccgcgcaccgcaaaatattctttgatctttgtctaaatgaggtatcgaaagggaataggccagggacacattttactaaggagggatggaagaatatcgtggattcgttctacgaggagactggtgtgaagtatactaagaagcaaatgaagaatcactgggatttcactaagaagcagtggaaattgtggattaagctagttgctgaaagtaatatgaaatgggatccgagtacaaacaagtttggtgctagtgcgaaagattgggctaactatatacaggtttacccagaagccgcgcagtttcagtataaagaactcccgttccctgacaaattggagatcatttttgctggagttatagattctgaagggatggagatctcctattctcgtaagaggcagaatgatagctcggacagttcctttatgcagtcggaagaacaagagttggcgaatatggagggggaggatgagcatctttttgacactgaggatgaacatctttttgctgctgaggatgagcatggttttcatgccattccaataaagagtggtgaaaaggttcagtctcatttaagaagccgtagagcaattgctagtgaaccgagtttatctagctcatcccagacaaaggcaaaggctgtctggacgcctgcatatcacagagcatttctggatctatgtgtagaagagacattaaagggtaataagcctaggacacatttcaccagggatgcttggaggactattctcgagtcctttcaacaaagaacaggccttggttataataggttacagttgaagaatcattgggatatcacaaaggaacaatggagagtctggtctaagctgattggaacaagtagcatgggatgggatccaaacacgaaaaaatttggtgcaactgaagaagtttgggccaactacttagagtcaaacccggaagctgcacctttcagatacaaggaacctcagttcactgacaaactggaaatcatatttgacggaacaacagttactggagagacagaacctcctaccaagcgaagcaagtataatgataattcgagtgcatctgttttgaacatggatgaacttggcatgaggaaccaagctggaaacattgaacattttgatgctgtaccaatttcctttagacaagccaagctcacttatagcattggagaatgcatcgactgtcttgatgccatggaggaagtcgtacaaggaagtgatctctatctgtttgcattagatgtattcctgaaaaaggaatacagggaaatatttcttcaactgaaaaagcctaatgtaaggattgcatggttgcagcggctgcagtcagttggtccacctttggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

467

Amino Acids

53.88

Weight (kDa)

6.02

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19220 AT3G11290 AT3G11290 AT3G11310 AT5G05800 AT5G05800 AT5G05800 AT5G05800 AT5G05800
fragaria_vesca	FvH4_7g23930 FvH4_7g23930
malus_domestica	MD01G1146000.v1.1
prunus_persica	Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1
pyrus_communis	pycom01g16540
rosa_chinensis	RchiOBHm_Chr1g0369261
rosa_multiflora	Rmu_co8372517.1_g000001 Rmu_sc0001482.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287810
rosa_rugosa	Rorug01G0349400
rosa_samantha	Rh1AG356300 Rh1BG320000 Rh1CG333900 Rh1DG350600
rosa_wichuraiana	Rw1G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	825
AccI	GTMKAC	1 cut(s)	170
AccII	CGCG	2 cut(s)	41, 335
AciI	CCGC	4 cut(s)	39, 46, 333, 1372
AclWI	GGATC	5 cut(s)	257, 270, 723, 911, 924
AcsI	RAATTY	1 cut(s)	932
AcuI	CTGAAG	2 cut(s)	426, 966
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	3 cut(s)	271, 1182, 1263
AfiI	CCNNNNNNNGG	2 cut(s)	670, 1309
AgsI	TTSAA	5 cut(s)	803, 841, 1123, 1166, 1334
AjnI	CCWGG	2 cut(s)	97, 767
AloI	GAACNNNNNNTCC	4 cut(s)	345, 377, 998, 1030
AluBI	AGCT	8 cut(s)	26, 235, 450, 657, 889, 986, 1154, 1207
AluI	AGCT	8 cut(s)	26, 235, 450, 657, 889, 986, 1154, 1207
Alw26I	GTCTC	4 cut(s)	149, 612, 725, 1058
AlwI	GGATC	5 cut(s)	257, 270, 723, 911, 924
AlwNI	CAGNNNCTG	2 cut(s)	1058, 1375
Ama87I	CYCGRG	1 cut(s)	791
AoxI	GGCC	3 cut(s)	95, 814, 957
ApeKI	GCWGC	4 cut(s)	548, 986, 1369, 1375
ApoI	RAATTY	1 cut(s)	932
Asp700I	GAANNNNTTC	2 cut(s)	600, 1326
AspA2I	CCTAGG	1 cut(s)	752
AspLEI	GCGC	2 cut(s)	43, 337
AspS9I	GGNCC	2 cut(s)	957, 1388
AsuC2I	CCSGG	1 cut(s)	980
AsuHPI	GGTGA	2 cut(s)	605, 757
AvaI	CYCGRG	1 cut(s)	791
AvaII	GGWCC	1 cut(s)	1388
AvrII	CCTAGG	1 cut(s)	752
BamHI	GGATCC	2 cut(s)	262, 916
BbvCI	CCTCAGC	1 cut(s)	552
BbvI	GCAGC	4 cut(s)	535, 973, 1362, 1381
BccI	CCATC	3 cut(s)	117, 406, 906
BceAI	ACGGC	1 cut(s)	606
BciT130I	CCWGG	2 cut(s)	99, 769
BcnI	CCSGG	1 cut(s)	980
BcoDI	GTCTC	4 cut(s)	149, 612, 725, 1058
BfaI	CTAG	5 cut(s)	236, 288, 636, 654, 753
BfmI	CTRYAG	1 cut(s)	1376
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	6 cut(s)	333, 549, 987, 1370, 1373, 1376
BlnI	CCTAGG	1 cut(s)	752
BlsI	GCNGC	6 cut(s)	334, 550, 988, 1371, 1374, 1377
Bme1390I	CCNGG	3 cut(s)	99, 769, 980
Bme18I	GGWCC	1 cut(s)	1388
BmeT110I	CYCGRG	1 cut(s)	791
BmgT120I	GGNCC	2 cut(s)	957, 1388
BmiI	GGNNCC	4 cut(s)	264, 918, 1008, 1148
BmrFI	CCNGG	3 cut(s)	99, 769, 980
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	6 cut(s)	523, 763, 1121, 1165, 1234, 1239
BmuI	ACTGGG	1 cut(s)	205
BpmI	CTGGAG	2 cut(s)	411, 1080
Bpu10I	CCTNAGC	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	980
BsaAI	YACGTR	1 cut(s)	30
BsaBI	GATNNNNATC	4 cut(s)	416, 513, 537, 1278
BsaHI	GRCGYC	1 cut(s)	689
BsaJI	CCNNGG	5 cut(s)	98, 752, 768, 817, 1248
BsaXI	ACNNNNNCTCC	2 cut(s)	1057, 1087
Bsc4I	CCNNNNNNNGG	2 cut(s)	670, 1309
Bse1I	ACTGG	4 cut(s)	163, 200, 1032, 1063
Bse8I	GATNNNNATC	4 cut(s)	416, 513, 537, 1278
BseBI	CCWGG	2 cut(s)	99, 769
BseDI	CCNNGG	5 cut(s)	98, 752, 768, 817, 1248
BseGI	GGATG	9 cut(s)	128, 417, 514, 538, 562, 659, 778, 917, 1135
BseJI	GATNNNNATC	4 cut(s)	416, 513, 537, 1278
BseLI	CCNNNNNNNGG	2 cut(s)	670, 1309
BseMII	CTCAG	3 cut(s)	519, 543, 1025
BseNI	ACTGG	4 cut(s)	163, 200, 1032, 1063
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	535, 973, 1362, 1381
BsgI	GTGCAG	1 cut(s)	972
Bsh1236I	CGCG	2 cut(s)	41, 335
BshFI	GGCC	3 cut(s)	97, 816, 959
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	1 cut(s)	980
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	670, 1309
BsmAI	GTCTC	4 cut(s)	149, 612, 725, 1058
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	1232
BsnI	GGCC	3 cut(s)	97, 816, 959
BsoBI	CYCGRG	1 cut(s)	791
Bsp143I	GATC	7 cut(s)	61, 262, 378, 417, 715, 916, 1273
Bsp19I	CCATGG	1 cut(s)	1248
BspACI	CCGC	4 cut(s)	39, 46, 333, 1372
BspANI	GGCC	3 cut(s)	97, 816, 959
BspCNI	CTCAG	3 cut(s)	520, 544, 1024
BspFNI	CGCG	2 cut(s)	41, 335
BspLI	GGNNCC	4 cut(s)	264, 918, 1008, 1148
BspMAI	CTGCAG	1 cut(s)	1380
BspPI	GGATC	5 cut(s)	257, 270, 723, 911, 924
BsrI	ACTGG	4 cut(s)	163, 200, 1032, 1063
BssECI	CCNNGG	5 cut(s)	98, 752, 768, 817, 1248
BssMI	GATC	7 cut(s)	61, 262, 378, 417, 715, 916, 1273
BssNAI	GTATAC	1 cut(s)	171
BssNI	GRCGYC	1 cut(s)	689
BssT1I	CCWWGG	3 cut(s)	752, 817, 1248
Bst1107I	GTATAC	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	99, 769
Bst4CI	ACNGT	4 cut(s)	458, 837, 1054, 1238
Bst6I	CTCTTC	1 cut(s)	723
BstACI	GRCGYC	1 cut(s)	689
BstAPI	GCANNNNNTGC	1 cut(s)	1375
BstBAI	YACGTR	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	39, 693
BstDEI	CTNAG	8 cut(s)	114, 174, 207, 528, 552, 885, 967, 1011
BstDSI	CCRYGG	1 cut(s)	1248
BstENI	CCTNNNNNAGG	1 cut(s)	1307
BstF5I	GGATG	9 cut(s)	128, 417, 514, 538, 562, 659, 778, 917, 1135
BstFNI	CGCG	2 cut(s)	41, 335
BstHHI	GCGC	2 cut(s)	43, 337
BstKTI	GATC	7 cut(s)	64, 265, 381, 420, 718, 919, 1276
BstMAI	GTCTC	4 cut(s)	149, 612, 725, 1058
BstMBI	GATC	7 cut(s)	61, 262, 378, 417, 715, 916, 1273
BstMWI	GCNNNNNNNGC	1 cut(s)	1375
BstNI	CCWGG	2 cut(s)	99, 769
BstSCI	CCNGG	3 cut(s)	97, 767, 978
BstSFI	CTRYAG	1 cut(s)	1376
BstUI	CGCG	2 cut(s)	41, 335
BstV1I	GCAGC	4 cut(s)	535, 973, 1362, 1381
BstX2I	RGATCY	4 cut(s)	262, 417, 715, 916
BstYI	RGATCY	4 cut(s)	262, 417, 715, 916
BstZ17I	GTATAC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	97, 816, 959
BtgI	CCRYGG	1 cut(s)	1248
BtsCI	GGATG	9 cut(s)	128, 417, 514, 538, 562, 659, 778, 917, 1135
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	4 cut(s)	193, 221, 525, 1017
Cac8I	GCNNGC	2 cut(s)	39, 693
CaiI	CAGNNNCTG	2 cut(s)	1058, 1375
CfoI	GCGC	2 cut(s)	43, 337
Cfr13I	GGNCC	2 cut(s)	957, 1388
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	3 cut(s)	270, 1181, 1262
CviAII	CATG	7 cut(s)	563, 572, 907, 1126, 1141, 1249, 1362
CviQI	GTAC	3 cut(s)	270, 1181, 1262
DdeI	CTNAG	8 cut(s)	114, 174, 207, 528, 552, 885, 967, 1011
DpnI	GATC	7 cut(s)	63, 264, 380, 419, 717, 918, 1275
DpnII	GATC	7 cut(s)	61, 262, 378, 417, 715, 916, 1273
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
Eco130I	CCWWGG	3 cut(s)	752, 817, 1248
Eco147I	AGGCCT	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	1 cut(s)	1388
Eco57I	CTGAAG	2 cut(s)	426, 966
Eco88I	CYCGRG	1 cut(s)	791
EcoNI	CCTNNNNNAGG	1 cut(s)	1307
EcoRII	CCWGG	2 cut(s)	97, 767
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	3 cut(s)	752, 817, 1248
EcoT22I	ATGCAT	1 cut(s)	1232
ErhI	CCWWGG	3 cut(s)	752, 817, 1248
FaeI	CATG	7 cut(s)	566, 575, 910, 1129, 1144, 1252, 1365
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	7 cut(s)	562, 571, 906, 1125, 1140, 1248, 1361
FauI	CCCGC	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	6 cut(s)	333, 549, 987, 1370, 1373, 1376
FokI	GGATG	9 cut(s)	135, 424, 521, 545, 569, 646, 785, 924, 1142
Fsp4HI	GCNGC	6 cut(s)	333, 549, 987, 1370, 1373, 1376
FspBI	CTAG	5 cut(s)	236, 288, 636, 654, 753
GlaI	GCGC	2 cut(s)	42, 336
GluI	GCNGC	6 cut(s)	333, 549, 987, 1370, 1373, 1376
GsuI	CTGGAG	2 cut(s)	411, 1080
HaeIII	GGCC	3 cut(s)	97, 816, 959
HapII	CCGG	1 cut(s)	980
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	2 cut(s)	43, 337
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	7 cut(s)	566, 575, 910, 1129, 1144, 1252, 1365
Hin6I	GCGC	2 cut(s)	41, 335
HinP1I	GCGC	2 cut(s)	41, 335
HinfI	GANTC	7 cut(s)	140, 190, 401, 794, 844, 876, 971
HpaII	CCGG	1 cut(s)	980
HphI	GGTGA	2 cut(s)	605, 757
Hpy166II	GTNNAC	5 cut(s)	171, 322, 641, 1017, 1391
Hpy188I	TCNGA	5 cut(s)	267, 406, 454, 475, 998
Hpy188III	TCNNGA	5 cut(s)	685, 713, 791, 1241, 1303
Hpy8I	GTNNAC	5 cut(s)	171, 322, 641, 1017, 1391
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	4 cut(s)	458, 837, 1054, 1238
HpyCH4IV	ACGT	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1375
HpyF3I	CTNAG	8 cut(s)	114, 174, 207, 528, 552, 885, 967, 1011
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	7 cut(s)	566, 575, 910, 1129, 1144, 1252, 1365
HspAI	GCGC	2 cut(s)	41, 335
Kzo9I	GATC	7 cut(s)	61, 262, 378, 417, 715, 916, 1273
Lsp1109I	GCAGC	4 cut(s)	535, 973, 1362, 1381
LweI	GCATC	6 cut(s)	523, 763, 1121, 1165, 1234, 1239
MaeI	CTAG	5 cut(s)	236, 288, 636, 654, 753
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	831, 1054
MalI	GATC	7 cut(s)	63, 264, 380, 419, 717, 918, 1275
MboI	GATC	7 cut(s)	61, 262, 378, 417, 715, 916, 1273
MboII	GAAGA	7 cut(s)	139, 199, 488, 740, 853, 959, 1322
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	4 cut(s)	262, 417, 715, 916
MluCI	AATT	6 cut(s)	221, 371, 630, 932, 1102, 1185
MlyI	GAGTC	3 cut(s)	803, 885, 980
MmeI	TCCRAC	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	1232
MroXI	GAANNNNTTC	2 cut(s)	600, 1326
MseI	TTAA	3 cut(s)	231, 614, 737
MslI	CAYNNNNRTG	1 cut(s)	1173
MspA1I	CMGCKG	1 cut(s)	1372
MspI	CCGG	1 cut(s)	980
MspR9I	CCNGG	3 cut(s)	99, 769, 980
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	1232
MvaI	CCWGG	2 cut(s)	99, 769
MvnI	CGCG	2 cut(s)	41, 335
MwoI	GCNNNNNNNGC	1 cut(s)	1375
NciI	CCSGG	1 cut(s)	980
NcoI	CCATGG	1 cut(s)	1248
NdeII	GATC	7 cut(s)	61, 262, 378, 417, 715, 916, 1273
NlaIII	CATG	7 cut(s)	566, 575, 910, 1129, 1144, 1252, 1365
NlaIV	GGNNCC	4 cut(s)	264, 918, 1008, 1148
NsiI	ATGCAT	1 cut(s)	1232
PaeR7I	CTCGAG	1 cut(s)	791
PceI	AGGCCT	1 cut(s)	816
PctI	GAATGC	1 cut(s)	1232
PdmI	GAANNNNTTC	2 cut(s)	600, 1326
PfeI	GAWTC	4 cut(s)	140, 190, 401, 844
PkrI	GCNGC	6 cut(s)	334, 550, 988, 1371, 1374, 1377
PleI	GAGTC	3 cut(s)	802, 884, 979
PpsI	GAGTC	3 cut(s)	802, 884, 979
Ppu21I	YACGTR	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	825
Psp6I	CCWGG	2 cut(s)	97, 767
PspGI	CCWGG	2 cut(s)	97, 767
PspN4I	GGNNCC	4 cut(s)	264, 918, 1008, 1148
PspPI	GGNCC	2 cut(s)	957, 1388
PsrI	GAACNNNNNNTAC	2 cut(s)	1039, 1071
PstI	CTGCAG	1 cut(s)	1380
PstNI	CAGNNNCTG	2 cut(s)	1058, 1375
PsuI	RGATCY	4 cut(s)	262, 417, 715, 916
RsaI	GTAC	3 cut(s)	271, 1182, 1263
RsaNI	GTAC	3 cut(s)	270, 1181, 1262
RseI	CAYNNNNRTG	1 cut(s)	1173
SaqAI	TTAA	3 cut(s)	231, 614, 737
SatI	GCNGC	6 cut(s)	333, 549, 987, 1370, 1373, 1376
Sau3AI	GATC	7 cut(s)	61, 262, 378, 417, 715, 916, 1273
Sau96I	GGNCC	2 cut(s)	957, 1388
SchI	GAGTC	3 cut(s)	803, 885, 980
ScrFI	CCNGG	3 cut(s)	99, 769, 980
SfaNI	GCATC	6 cut(s)	523, 763, 1121, 1165, 1234, 1239
SfcI	CTRYAG	1 cut(s)	1376
Sfr274I	CTCGAG	1 cut(s)	791
SinI	GGWCC	1 cut(s)	1388
SlaI	CTCGAG	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	1173
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	6 cut(s)	221, 371, 630, 932, 1102, 1185
SseBI	AGGCCT	1 cut(s)	816
SsiI	CCGC	4 cut(s)	39, 46, 333, 1372
SspI	AATATT	2 cut(s)	54, 1326
SspMI	CTAG	5 cut(s)	236, 288, 636, 654, 753
StuI	AGGCCT	1 cut(s)	816
StyD4I	CCNGG	3 cut(s)	97, 767, 978
StyI	CCWWGG	3 cut(s)	752, 817, 1248
TaaI	ACNGT	4 cut(s)	458, 837, 1054, 1238
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	4 cut(s)	83, 792, 1106, 1233
TasI	AATT	6 cut(s)	221, 371, 630, 932, 1102, 1185
TatI	WGTACW	1 cut(s)	269
TauI	GCSGC	2 cut(s)	335, 1375
TfiI	GAWTC	4 cut(s)	140, 190, 401, 844
Tru1I	TTAA	3 cut(s)	231, 614, 737
Tru9I	TTAA	3 cut(s)	231, 614, 737
TscAI	CASTG	4 cut(s)	200, 221, 532, 1024
TseI	GCWGC	4 cut(s)	548, 986, 1369, 1375
TspDTI	ATGAA	5 cut(s)	200, 269, 549, 560, 1146
TspGWI	ACGGA	1 cut(s)	1059
TspRI	CASTG	4 cut(s)	200, 221, 532, 1024
VpaK11BI	GGWCC	1 cut(s)	1388
XagI	CCTNNNNNAGG	1 cut(s)	1307
XapI	RAATTY	1 cut(s)	932
XhoI	CTCGAG	1 cut(s)	791
XmaJI	CCTAGG	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	170
XmnI	GAANNNNTTC	2 cut(s)	600, 1326
XspI	CTAG	5 cut(s)	236, 288, 636, 654, 753
Zsp2I	ATGCAT	1 cut(s)	1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.