Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006444

Physical Location & Seq

Genomic Coordinates Forward (+)

59169775 .. 59185644

Gene Structure 15870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG356300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGCGGTGGCTCTACGCGCACGTCGTCCCCTTCTTCCCGCGCACCAAGATCGCGGCCATCTCCGTCGGCAACGACGTCCTCGAGTCCACGCCGGAGTTCTCACAGTTCCTCCTCCCGGCGATCCAGAACGTCCACCTGGCGCTCCTCGACCTCGGGATCCGCAAGATCGCCGTCTCCACCACCTTCTCCTTCGTCAACGTCGTCACGACGCCGTTTCCTCCCTCCGCCGCCCAGTTCCAGGACGCGCCGCTCGAGACGGTGATCAGGCCTCTGCTTCAGTTCTTGAGCGACACCAACTCCTCCTTCTTCATCAACGTCTACCCCTACAACCTCTACCGGCTCCGGAGCGAGATTCCGATCGGGTTCCCTCTCTTTCAGGAGCACCCGTTCAGTTTCCGAGACGACATGGCCACCGGCGTGCGCTACCGGAATCTCTTCGACATGATGGTCGACGCCGTCATCTCCGCCATGGCCGTCGCCGGACACGAGAACATTCCGCTGATCGTGACTGAGACGGGTTGGCCCAGCTCCAGCACCGACCCGAGAGAAGCCGACGCGAACCCGGTTTACGCGGAGCTCTACATCAAGGGGCTATTGGGCCATCTGAGGTCGGGTCGGGGCACGCCGCTCCGAAAAGAAGGGGTGCCTCTGGTTTTCATCTATGAGCTGATTGATAAGCAAGTGAGGCAGGGACGCAACTGGGGAATTCTTTTTCCGAATATGACCAAGAAGTACAAGAGCATTGACTACAGCTCTGGCTCTGATCGCGTTCTTGGGGGTTTCGGATTCTTGAAGATGGTGGTTGGTCAATTCTTGGTCTTTGCTTTCCTCTTGCGTGCTCAGTTTTTGGTAACCTGCAAATTGGGGAGAACTGAAAGTGTTGGGGCTTTGATTTTCACTCTGGGTTGCTGCTTTTACTTTGATTTCTGTAGAGATTACTTGGTCTCTTGCAATTGCCGCCCTTTTAATCGCAGAACAATTGGAGTTGAACAAGGGATGTTTGGCTCATCAACCCCGAAAGCTACGTGGTCGCCTGCGCACCGCAAAATATTCTTTGATCTTTGTCTAAATGAGGTATCGAAAGGGAATAGGCCAGGGACACATTTTACTAAGGAGGGATGGAAGAATATCGTGGATTCGTTCTACGAGGAGACTGGTGTGAAGTATACTAAGAAGCAAATGAAGAATCACTGGGATTTCACTAAGAAGCAGTGGAAATTGTGGATTAAGCTAGTTGCTGAAAGTAATATGAAATGGGATCCGAGTACAAACAAGTTTGGTGCTAGTGCGAAAGATTGGGCTAACTATATACAGGTTTGCCCAGAAGCCGCGCAGTTTCAGTATAAAGAACTCCCTTTCCCTGACAAATTGGAGATCATTTTTGCTGGAGTTATAGATTCTGAAGGGATGGAGATCTCCTATTCTCGTAAGAGGCAGAATGATAGCTCGGACAGTTCCTTTATGCAGTCGGAAGAACAAGAGTTGGCGAATATGGAGGGGGAGGATGAGCATCTTTTTGACACTGAGGATGAACATCTTTTTGCTGCTGAGGATGAGCATGGTTTTCATGCCATTCCAATAAAGAGTGGTGAAAAGGTTCAGTCTCATTTAAGAAGCCGTAGAGCAATTGCTAGTGAACCGAGTTTATCTAGCTCATCCCAGACAAAGGCAAAGGCTGTCTGGACGCCTGCATATCACAGAGCATTTCTGGATCTATGTGTAGAAGAGACATTAAAGGGTAATAAGCCTAGGACACATTTCACCAGGGATGCTTGGAGGACTATTCTCGAGTCCTTTCAACAAAGAACAGGCCTTGGTTATAATAGGTTACAGTTGAAGAATCATTGGGATATCACAAAGGAACAATGGAGAGTCTGGTCTAAGCTGATTGGAACAAGTAGCATGGGATGGGATCCAAACACGAAAAAATTTGGTGCAACTGAAGAAGTTTGGGCCAACTACTTAGAGTCAAACCCGGAAGCTGCACCTTTCAGATACAAGGAACCTCAGTTCACTGACAAACTGGAAATCATATTTGACGGAACAACAGTTACCGGAGAGACAGAACCTCCTACTAAGCGAAGCAAGTATAATGATAATTCGAGTGCATCTGTTTTGAACATAGATGAACTTGGCATGAGGAACCAAGCTGGAAACATTGAACATTTTGATGCTGTACCAATTTCCTTTAGACAAGCCAAGCTCACTTATAGCATTGGAGAATGCATCGACTGTCTTGATGCCATGGAGGAAGTCGTACAAGGAAGTGATCTCTATCTGTTTGCATTAGATGTATTCCTGAAAAAGGAATACAGGGAAATATTTCTTCAACTGAAAAAGCCTAATGTAAGGATTGCATGGTTGCAGCGGCTGCAGTCAGTTGGTCCACCTTTGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

799

Amino Acids

91.25

Weight (kDa)

6.66

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	3 - 246	1.4e-39	Glycosyl hydrolases family 17
Myb_DNA-bind_3	PF12776	342 - 436	1.8e-28	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3	PF12776	561 - 654	1.7e-30	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19220 AT3G11290 AT3G11290 AT3G11310 AT5G05800 AT5G05800 AT5G05800 AT5G05800 AT5G05800
fragaria_vesca	FvH4_7g23930 FvH4_7g23930
malus_domestica	MD01G1146000.v1.1
prunus_persica	Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1
pyrus_communis	pycom01g16540
rosa_chinensis	RchiOBHm_Chr1g0369261
rosa_multiflora	Rmu_co8372517.1_g000001 Rmu_sc0001482.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287810
rosa_rugosa	Rorug01G0349400
rosa_samantha	Rh1AG356300 Rh1BG320000 Rh1CG333900 Rh1DG350600
rosa_wichuraiana	Rw1G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1821
AasI	GACNNNNNNGTC	1 cut(s)	446
AatII	GACGTC	1 cut(s)	78
Acc16I	TGCGCA	1 cut(s)	1038
Acc36I	ACCTGC	1 cut(s)	863
AccB1I	GGYRCC	1 cut(s)	643
AccBSI	CCGCTC	2 cut(s)	250, 628
AccI	GTMKAC	3 cut(s)	318, 450, 1166
AccII	CGCG	8 cut(s)	17, 40, 53, 245, 557, 572, 768, 1331
AccIII	TCCGGA	1 cut(s)	342
AclWI	GGATC	8 cut(s)	115, 151, 164, 1253, 1266, 1719, 1907, 1920
AcoI	YGGCCR	3 cut(s)	54, 408, 471
AcsI	RAATTY	2 cut(s)	705, 1928
AcuI	CTGAAG	3 cut(s)	260, 1422, 1962
AcyI	GRCGYC	4 cut(s)	75, 209, 453, 1685
AfaI	GTAC	4 cut(s)	734, 1267, 2178, 2259
AfiI	CCNNNNNNNGG	4 cut(s)	115, 238, 1666, 2305
AgsI	TTSAA	7 cut(s)	793, 989, 1799, 1837, 2119, 2162, 2330
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	4 cut(s)	135, 237, 1093, 1763
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AleI	CACNNNNGTG	1 cut(s)	416
AloI	GAACNNNNNNTCC	6 cut(s)	371, 403, 1341, 1373, 1994, 2026
Alw21I	GWGCWC	3 cut(s)	384, 579, 841
Alw26I	GTCTC	9 cut(s)	178, 248, 393, 506, 949, 1145, 1608, 1721, 2054
AlwI	GGATC	8 cut(s)	115, 151, 164, 1253, 1266, 1719, 1907, 1920
AlwNI	CAGNNNCTG	1 cut(s)	2371
Ama87I	CYCGRG	5 cut(s)	80, 152, 251, 541, 1787
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	9 cut(s)	54, 266, 408, 471, 521, 598, 1091, 1810, 1953
ApeKI	GCWGC	5 cut(s)	909, 1544, 1982, 2365, 2371
ApoI	RAATTY	2 cut(s)	705, 1928
Asp700I	GAANNNNTTC	3 cut(s)	434, 1596, 2322
AspA2I	CCTAGG	1 cut(s)	1748
AspLEI	GCGC	7 cut(s)	19, 42, 142, 247, 423, 1039, 1333
AspS9I	GGNCC	4 cut(s)	522, 598, 1953, 2384
AsuC2I	CCSGG	3 cut(s)	116, 563, 1976
AsuHPI	GGTGA	3 cut(s)	271, 1601, 1753
AvaI	CYCGRG	5 cut(s)	80, 152, 251, 541, 1787
AvaII	GGWCC	1 cut(s)	2384
AvrII	CCTAGG	1 cut(s)	1748
BaeGI	GKGCMC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	410
BamHI	GGATCC	3 cut(s)	156, 1258, 1912
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	579
BauI	CACGAG	1 cut(s)	485
Bbv12I	GWGCWC	3 cut(s)	384, 579, 841
BbvCI	CCTCAGC	1 cut(s)	1548
BbvI	GCAGC	5 cut(s)	896, 1531, 1969, 2358, 2377
BccI	CCATC	7 cut(s)	65, 439, 609, 790, 1113, 1402, 1902
BceAI	ACGGC	5 cut(s)	155, 196, 440, 458, 1602
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	4 cut(s)	137, 239, 1095, 1765
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	3 cut(s)	116, 563, 1976
BcoDI	GTCTC	9 cut(s)	178, 248, 393, 506, 949, 1145, 1608, 1721, 2054
BfaI	CTAG	5 cut(s)	1232, 1284, 1632, 1650, 1749
BfmI	CTRYAG	3 cut(s)	748, 928, 2372
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	863
BglII	AGATCT	1 cut(s)	1413
BlnI	CCTAGG	1 cut(s)	1748
Bme1390I	CCNGG	7 cut(s)	116, 137, 239, 563, 1095, 1765, 1976
Bme18I	GGWCC	1 cut(s)	2384
BmeT110I	CYCGRG	5 cut(s)	80, 152, 251, 541, 1787
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	522, 598, 1953, 2384
BmiI	GGNNCC	8 cut(s)	158, 341, 365, 645, 1260, 1914, 2004, 2144
BmrFI	CCNGG	7 cut(s)	116, 137, 239, 563, 1095, 1765, 1976
BmrI	ACTGGG	3 cut(s)	226, 709, 1201
BmsI	GCATC	6 cut(s)	1519, 1759, 2117, 2161, 2230, 2235
BmuI	ACTGGG	3 cut(s)	226, 709, 1201
BpmI	CTGGAG	2 cut(s)	514, 1407
Bpu10I	CCTNAGC	1 cut(s)	1548
BpuEI	CTTGAG	1 cut(s)	304
BpuMI	CCSGG	3 cut(s)	116, 563, 1976
BsaAI	YACGTR	1 cut(s)	1026
BsaBI	GATNNNNATC	5 cut(s)	356, 1412, 1509, 1533, 2274
BsaHI	GRCGYC	4 cut(s)	75, 209, 453, 1685
BsaI	GGTCTC	1 cut(s)	949
BsaJI	CCNNGG	7 cut(s)	151, 468, 1094, 1748, 1764, 1813, 2244
BsaWI	WCCGGW	3 cut(s)	342, 426, 2054
BsaXI	ACNNNNNCTCC	8 cut(s)	93, 123, 281, 311, 371, 401, 2053, 2083
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 238, 1666, 2305
Bse118I	RCCGGY	2 cut(s)	336, 413
Bse1I	ACTGG	5 cut(s)	232, 704, 1159, 1196, 2028
Bse8I	GATNNNNATC	5 cut(s)	356, 1412, 1509, 1533, 2274
BseAI	TCCGGA	1 cut(s)	342
BseBI	CCWGG	4 cut(s)	137, 239, 1095, 1765
BseDI	CCNNGG	7 cut(s)	151, 468, 1094, 1748, 1764, 1813, 2244
BseGI	GGATG	9 cut(s)	1002, 1124, 1413, 1510, 1534, 1558, 1655, 1774, 1913
BseJI	GATNNNNATC	5 cut(s)	356, 1412, 1509, 1533, 2274
BseLI	CCNNNNNNNGG	4 cut(s)	115, 238, 1666, 2305
BseMII	CTCAG	6 cut(s)	501, 596, 854, 1515, 1539, 2021
BseNI	ACTGG	5 cut(s)	232, 704, 1159, 1196, 2028
BseRI	GAGGAG	4 cut(s)	101, 134, 289, 1163
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	5 cut(s)	896, 1531, 1969, 2358, 2377
BseYI	CCCAGC	1 cut(s)	524
BsgI	GTGCAG	1 cut(s)	1968
Bsh1236I	CGCG	8 cut(s)	17, 40, 53, 245, 557, 572, 768, 1331
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	9 cut(s)	56, 268, 410, 473, 523, 600, 1093, 1812, 1955
BshNI	GGYRCC	1 cut(s)	643
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	3 cut(s)	384, 579, 841
BsiHKCI	CYCGRG	5 cut(s)	80, 152, 251, 541, 1787
BslFI	GGGAC	3 cut(s)	11, 705, 1111
BslI	CCNNNNNNNGG	4 cut(s)	115, 238, 1666, 2305
BsmAI	GTCTC	9 cut(s)	178, 248, 393, 506, 949, 1145, 1608, 1721, 2054
BsmBI	CGTCTC	4 cut(s)	178, 248, 393, 506
BsmFI	GGGAC	3 cut(s)	11, 705, 1111
BsmI	GAATGC	1 cut(s)	2228
BsnI	GGCC	9 cut(s)	56, 268, 410, 473, 523, 600, 1093, 1812, 1955
Bso31I	GGTCTC	1 cut(s)	949
BsoBI	CYCGRG	5 cut(s)	80, 152, 251, 541, 1787
Bsp1286I	GDGCHC	4 cut(s)	384, 579, 623, 841
Bsp13I	TCCGGA	1 cut(s)	342
Bsp19I	CCATGG	2 cut(s)	468, 2244
BspANI	GGCC	9 cut(s)	56, 268, 410, 473, 523, 600, 1093, 1812, 1955
BspCNI	CTCAG	6 cut(s)	502, 597, 853, 1516, 1540, 2020
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	8 cut(s)	17, 40, 53, 245, 557, 572, 768, 1331
BspLI	GGNNCC	8 cut(s)	158, 341, 365, 645, 1260, 1914, 2004, 2144
BspMAI	CTGCAG	1 cut(s)	2376
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	8 cut(s)	115, 151, 164, 1253, 1266, 1719, 1907, 1920
BspT107I	GGYRCC	1 cut(s)	643
BspTNI	GGTCTC	1 cut(s)	949
BsrBI	CCGCTC	2 cut(s)	250, 628
BsrFI	RCCGGY	2 cut(s)	336, 413
BsrI	ACTGG	5 cut(s)	232, 704, 1159, 1196, 2028
BssAI	RCCGGY	2 cut(s)	336, 413
BssECI	CCNNGG	7 cut(s)	151, 468, 1094, 1748, 1764, 1813, 2244
BssNAI	GTATAC	1 cut(s)	1167
BssNI	GRCGYC	4 cut(s)	75, 209, 453, 1685
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	4 cut(s)	468, 1748, 1813, 2244
Bst1107I	GTATAC	1 cut(s)	1167
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	4 cut(s)	137, 239, 1095, 1765
Bst4CI	ACNGT	6 cut(s)	105, 259, 1454, 1833, 2050, 2234
Bst6I	CTCTTC	2 cut(s)	440, 1719
BstACI	GRCGYC	4 cut(s)	75, 209, 453, 1685
BstAPI	GCANNNNNTGC	1 cut(s)	2371
BstBAI	YACGTR	1 cut(s)	1026
BstC8I	GCNNGC	5 cut(s)	419, 623, 837, 1035, 1689
BstDSI	CCRYGG	2 cut(s)	468, 2244
BstEII	GGTNACC	1 cut(s)	850
BstENI	CCTNNNNNAGG	1 cut(s)	2303
BstF5I	GGATG	9 cut(s)	1002, 1124, 1413, 1510, 1534, 1558, 1655, 1774, 1913
BstFNI	CGCG	8 cut(s)	17, 40, 53, 245, 557, 572, 768, 1331
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	7 cut(s)	19, 42, 142, 247, 423, 1039, 1333
BstMAI	GTCTC	9 cut(s)	178, 248, 393, 506, 949, 1145, 1608, 1721, 2054
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 685, 765, 957, 2371
BstNI	CCWGG	4 cut(s)	137, 239, 1095, 1765
BstPI	GGTNACC	1 cut(s)	850
BstSCI	CCNGG	7 cut(s)	114, 135, 237, 561, 1093, 1763, 1974
BstSFI	CTRYAG	3 cut(s)	748, 928, 2372
BstSLI	GKGCMC	1 cut(s)	623
BstUI	CGCG	8 cut(s)	17, 40, 53, 245, 557, 572, 768, 1331
BstV1I	GCAGC	5 cut(s)	896, 1531, 1969, 2358, 2377
BstX2I	RGATCY	5 cut(s)	156, 1258, 1413, 1711, 1912
BstYI	RGATCY	5 cut(s)	156, 1258, 1413, 1711, 1912
BstZ17I	GTATAC	1 cut(s)	1167
BsuRI	GGCC	9 cut(s)	56, 268, 410, 473, 523, 600, 1093, 1812, 1955
BtgI	CCRYGG	2 cut(s)	468, 2244
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	9 cut(s)	1002, 1124, 1413, 1510, 1534, 1558, 1655, 1774, 1913
BtsI	GCAGTG	1 cut(s)	1217
BtsIMutI	CAGTG	4 cut(s)	1189, 1217, 1521, 2013
BveI	ACCTGC	1 cut(s)	863
Cac8I	GCNNGC	5 cut(s)	419, 623, 837, 1035, 1689
CaiI	CAGNNNCTG	1 cut(s)	2371
CfoI	GCGC	7 cut(s)	19, 42, 142, 247, 423, 1039, 1333
Cfr10I	RCCGGY	2 cut(s)	336, 413
Cfr13I	GGNCC	4 cut(s)	522, 598, 1953, 2384
CseI	GACGC	6 cut(s)	217, 251, 461, 563, 702, 1693
Csp6I	GTAC	4 cut(s)	733, 1266, 2177, 2258
CviAII	CATG	9 cut(s)	406, 442, 469, 1559, 1568, 1903, 2137, 2245, 2358
CviQI	GTAC	4 cut(s)	733, 1266, 2177, 2258
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	3 cut(s)	54, 408, 471
Eam1104I	CTCTTC	2 cut(s)	440, 1719
EarI	CTCTTC	2 cut(s)	440, 1719
EciI	GGCGGA	2 cut(s)	214, 454
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	4 cut(s)	468, 1748, 1813, 2244
Eco147I	AGGCCT	2 cut(s)	268, 1812
Eco24I	GRGCYC	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	949
Eco32I	GATATC	1 cut(s)	1852
Eco47I	GGWCC	1 cut(s)	2384
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	3 cut(s)	260, 1422, 1962
Eco88I	CYCGRG	5 cut(s)	80, 152, 251, 541, 1787
Eco91I	GGTNACC	1 cut(s)	850
EcoICRI	GAGCTC	1 cut(s)	577
EcoNI	CCTNNNNNAGG	1 cut(s)	2303
EcoO65I	GGTNACC	1 cut(s)	850
EcoRI	GAATTC	1 cut(s)	705
EcoRII	CCWGG	4 cut(s)	135, 237, 1093, 1763
EcoRV	GATATC	1 cut(s)	1852
EcoT14I	CCWWGG	4 cut(s)	468, 1748, 1813, 2244
EcoT22I	ATGCAT	1 cut(s)	2228
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	4 cut(s)	468, 1748, 1813, 2244
Esp3I	CGTCTC	4 cut(s)	178, 248, 393, 506
FaeI	CATG	9 cut(s)	409, 445, 472, 1562, 1571, 1906, 2140, 2248, 2361
FaqI	GGGAC	3 cut(s)	11, 705, 1111
FatI	CATG	9 cut(s)	405, 441, 468, 1558, 1567, 1902, 2136, 2244, 2357
FauI	CCCGC	1 cut(s)	45
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	3 cut(s)	318, 450, 1166
FokI	GGATG	9 cut(s)	1009, 1131, 1420, 1517, 1541, 1565, 1642, 1781, 1920
FriOI	GRGCYC	1 cut(s)	579
FspBI	CTAG	5 cut(s)	1232, 1284, 1632, 1650, 1749
FspI	TGCGCA	1 cut(s)	1038
GlaI	GCGC	7 cut(s)	18, 41, 141, 246, 422, 1038, 1332
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	2 cut(s)	514, 1407
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	9 cut(s)	56, 268, 410, 473, 523, 600, 1093, 1812, 1955
HgaI	GACGC	6 cut(s)	217, 251, 461, 563, 702, 1693
HhaI	GCGC	7 cut(s)	19, 42, 142, 247, 423, 1039, 1333
Hin1I	GRCGYC	4 cut(s)	75, 209, 453, 1685
Hin1II	CATG	9 cut(s)	409, 445, 472, 1562, 1571, 1906, 2140, 2248, 2361
Hin6I	GCGC	7 cut(s)	17, 40, 140, 245, 421, 1037, 1331
HinP1I	GCGC	7 cut(s)	17, 40, 140, 245, 421, 1037, 1331
HincII	GTYRAC	2 cut(s)	196, 451
HindII	GTYRAC	2 cut(s)	196, 451
HphI	GGTGA	3 cut(s)	271, 1601, 1753
Hpy99I	CGWCG	8 cut(s)	26, 68, 77, 203, 211, 455, 479, 557
HpyAV	CCTTC	6 cut(s)	40, 193, 199, 313, 632, 1397
HpyCH4III	ACNGT	6 cut(s)	105, 259, 1454, 1833, 2050, 2234
HpyCH4IV	ACGT	6 cut(s)	21, 75, 129, 198, 315, 1025
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 685, 765, 957, 2371
HpySE526I	ACGT	6 cut(s)	21, 75, 129, 198, 315, 1025
Hsp92I	GRCGYC	4 cut(s)	75, 209, 453, 1685
Hsp92II	CATG	9 cut(s)	409, 445, 472, 1562, 1571, 1906, 2140, 2248, 2361
HspAI	GCGC	7 cut(s)	17, 40, 140, 245, 421, 1037, 1331
Kpn2I	TCCGGA	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	261
LmnI	GCTCC	7 cut(s)	147, 345, 345, 379, 533, 574, 633
Lsp1109I	GCAGC	5 cut(s)	896, 1531, 1969, 2358, 2377
LweI	GCATC	6 cut(s)	1519, 1759, 2117, 2161, 2230, 2235
MaeI	CTAG	5 cut(s)	1232, 1284, 1632, 1650, 1749
MaeII	ACGT	6 cut(s)	21, 75, 129, 198, 315, 1025
MaeIII	GTNAC	5 cut(s)	202, 505, 850, 1827, 2050
MbiI	CCGCTC	2 cut(s)	250, 628
MfeI	CAATTG	3 cut(s)	952, 978, 1626
MflI	RGATCY	5 cut(s)	156, 1258, 1413, 1711, 1912
MhlI	GDGCHC	4 cut(s)	384, 579, 623, 841
MlsI	TGGCCA	1 cut(s)	410
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	4 cut(s)	92, 1799, 1881, 1976
MmeI	TCCRAC	1 cut(s)	1449
Mox20I	TGGCCA	1 cut(s)	410
Mph1103I	ATGCAT	1 cut(s)	2228
MroI	TCCGGA	1 cut(s)	342
MroXI	GAANNNNTTC	3 cut(s)	434, 1596, 2322
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	4 cut(s)	966, 1227, 1610, 1733
MslI	CAYNNNNRTG	2 cut(s)	416, 2169
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	499, 2368
MspR9I	CCNGG	7 cut(s)	116, 137, 239, 563, 1095, 1765, 1976
MunI	CAATTG	3 cut(s)	952, 978, 1626
Mva1269I	GAATGC	1 cut(s)	2228
MvaI	CCWGG	4 cut(s)	137, 239, 1095, 1765
MvnI	CGCG	8 cut(s)	17, 40, 53, 245, 557, 572, 768, 1331
MwoI	GCNNNNNNNGC	5 cut(s)	16, 685, 765, 957, 2371
NciI	CCSGG	3 cut(s)	116, 563, 1976
NcoI	CCATGG	2 cut(s)	468, 2244
NlaIII	CATG	9 cut(s)	409, 445, 472, 1562, 1571, 1906, 2140, 2248, 2361
NlaIV	GGNNCC	8 cut(s)	158, 341, 365, 645, 1260, 1914, 2004, 2144
NmuCI	GTSAC	2 cut(s)	202, 505
NsbI	TGCGCA	1 cut(s)	1038
NsiI	ATGCAT	1 cut(s)	2228
OliI	CACNNNNGTG	1 cut(s)	416
PaeR7I	CTCGAG	3 cut(s)	80, 251, 1787
PceI	AGGCCT	2 cut(s)	268, 1812
PcsI	WCGNNNNNNNCGW	6 cut(s)	21, 72, 78, 198, 249, 483
PctI	GAATGC	1 cut(s)	2228
PdmI	GAANNNNTTC	3 cut(s)	434, 1596, 2322
PfeI	GAWTC	7 cut(s)	352, 430, 786, 1136, 1186, 1397, 1840
PflFI	GACNNNGTC	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	237
Ple19I	CGATCG	1 cut(s)	360
PleI	GAGTC	4 cut(s)	91, 1798, 1880, 1975
PpsI	GAGTC	4 cut(s)	91, 1798, 1880, 1975
Ppu21I	YACGTR	1 cut(s)	1026
PsiI	TTATAA	1 cut(s)	1821
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	4 cut(s)	135, 237, 1093, 1763
PspEI	GGTNACC	1 cut(s)	850
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	4 cut(s)	135, 237, 1093, 1763
PspN4I	GGNNCC	8 cut(s)	158, 341, 365, 645, 1260, 1914, 2004, 2144
PspPI	GGNCC	4 cut(s)	522, 598, 1953, 2384
PspXI	VCTCGAGB	1 cut(s)	80
PsrI	GAACNNNNNNTAC	4 cut(s)	551, 583, 2035, 2067
PstI	CTGCAG	1 cut(s)	2376
PstNI	CAGNNNCTG	1 cut(s)	2371
PsuI	RGATCY	5 cut(s)	156, 1258, 1413, 1711, 1912
PsyI	GACNNNGTC	1 cut(s)	455
PvuI	CGATCG	1 cut(s)	360
RsaI	GTAC	4 cut(s)	734, 1267, 2178, 2259
RsaNI	GTAC	4 cut(s)	733, 1266, 2177, 2258
RseI	CAYNNNNRTG	2 cut(s)	416, 2169
SacI	GAGCTC	1 cut(s)	579
SalI	GTCGAC	1 cut(s)	449
SaqAI	TTAA	4 cut(s)	966, 1227, 1610, 1733
Sau96I	GGNCC	4 cut(s)	522, 598, 1953, 2384
SchI	GAGTC	4 cut(s)	92, 1799, 1881, 1976
ScrFI	CCNGG	7 cut(s)	116, 137, 239, 563, 1095, 1765, 1976
SduI	GDGCHC	4 cut(s)	384, 579, 623, 841
SfaNI	GCATC	6 cut(s)	1519, 1759, 2117, 2161, 2230, 2235
SfcI	CTRYAG	3 cut(s)	748, 928, 2372
Sfr274I	CTCGAG	3 cut(s)	80, 251, 1787
SgrAI	CRCCGGYG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	2384
SlaI	CTCGAG	3 cut(s)	80, 251, 1787
SmiMI	CAYNNNNRTG	2 cut(s)	416, 2169
SmlI	CTYRAG	4 cut(s)	80, 251, 283, 1787
SmoI	CTYRAG	4 cut(s)	80, 251, 283, 1787
SseBI	AGGCCT	2 cut(s)	268, 1812
SspI	AATATT	2 cut(s)	1050, 2322
SspMI	CTAG	5 cut(s)	1232, 1284, 1632, 1650, 1749
SstI	GAGCTC	1 cut(s)	579
StuI	AGGCCT	2 cut(s)	268, 1812
StyD4I	CCNGG	7 cut(s)	114, 135, 237, 561, 1093, 1763, 1974
StyI	CCWWGG	4 cut(s)	468, 1748, 1813, 2244
TaaI	ACNGT	6 cut(s)	105, 259, 1454, 1833, 2050, 2234
TaiI	ACGT	6 cut(s)	24, 78, 132, 201, 318, 1028
TaqI	TCGA	9 cut(s)	81, 147, 252, 438, 450, 1079, 1788, 2102, 2229
TatI	WGTACW	2 cut(s)	732, 1265
TauI	GCSGC	7 cut(s)	56, 230, 250, 628, 960, 1331, 2371
TfiI	GAWTC	7 cut(s)	352, 430, 786, 1136, 1186, 1397, 1840
Tru1I	TTAA	4 cut(s)	966, 1227, 1610, 1733
Tru9I	TTAA	4 cut(s)	966, 1227, 1610, 1733
TscAI	CASTG	4 cut(s)	1196, 1217, 1528, 2020
TseFI	GTSAC	2 cut(s)	202, 505
TseI	GCWGC	5 cut(s)	909, 1544, 1982, 2365, 2371
Tsp45I	GTSAC	2 cut(s)	202, 505
TspDTI	ATGAA	7 cut(s)	298, 646, 1196, 1265, 1545, 1556, 2142
TspGWI	ACGGA	2 cut(s)	52, 2055
TspRI	CASTG	4 cut(s)	1196, 1217, 1528, 2020
Tth111I	GACNNNGTC	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	2384
XagI	CCTNNNNNAGG	1 cut(s)	2303
XapI	RAATTY	2 cut(s)	705, 1928
XhoI	CTCGAG	3 cut(s)	80, 251, 1787
XmaJI	CCTAGG	1 cut(s)	1748
XmiI	GTMKAC	3 cut(s)	318, 450, 1166
XmnI	GAANNNNTTC	3 cut(s)	434, 1596, 2322
XspI	CTAG	5 cut(s)	1232, 1284, 1632, 1650, 1749
ZraI	GACGTC	1 cut(s)	76
Zsp2I	ATGCAT	1 cut(s)	2228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.