Rroxscaffold_4G00287810
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006444
Physical Location & Seq
Reverse (-)
8769854 .. 8771089
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00287810.1

Sequence Viewer

Length: 1119 bp
ATGAGATTAGTAATCGCAAGTTCTGTGTCACAGGTTTACCCAGAAGCCACGCAGTTTCAGTATAAAGAACTCCCGTTCCCTGACAAATTGGAGATAATTTTTGCTGGAGTTATAGATTCTGAAGGGATGGAGATCTCTTATTCTCGTAAGAGGCAGAATGATAGCTCGGACAGTTCCTTTATGCAGTCGGAAGAACAAGAGTTGGCAAATATGGAGGGGGAGGATGAGCATCTTTTTGACACTGAGGATGAACATCTTTTTGCTGCTGAGGATGAGCATGGTTTTCATGCCATTCCAATAAAGAGTGGTGAAAAGATTCAGTCTCATTTAAGAAGCCGTAGAGCAATTGCTAGTGAACCGAGTTTATCTAGCTCATCCCAGACAAAGGCAAAGGCTGTCTGGACGCCTGCATATCACAGAGCATTTCTGGATCTATGTGTAGAAGAGACATTGAAGGGTAATAAGCCTAGGACACATTTCACCAGGGATGCTTGGAGGACTATTCTCGAGTCCTTTCAACAAAGAACAGGCCTTGGTTATAATAGGTTACAGTTGAAGAATCATTGGGATATCACAAAGGAACAATGGAGAGTCTGGTCTAAGCTGATTGGAACAAGTAGCATGGGATGGGATCCAAACACAAAAAAATTTGGTGCAACTGAAGAAGTTTGGGCCAACTACTTAGAGTCAAACCCGGAAGCTGCACCTTTCAGATACAAGGAACCTCAGTTCACTGACAAACTGGAAATCATATTTGACGGAACAACAGTTACCGGAGAGACAGAACCTCCTACTAAGCGAAGCAAGTATAATGATAATTCGAGTGCATCTGTTTTGAACATAGATGAACTTGGCATGAGGAACCAAGCTGGAAACATTGAACATTTTGATGCTGTACCAATTTCCTTTAGACAAGCCAAGCTCACTTATAGCATTGGAGAATGCATCGACTGTCTTGATGCCATGGAGGAAGTCGTACAAGGAAGTGATCTCTATCTGTTCGCATTAGATGTATTCCTGAAAAAGGAATACAGGGAAATATTTCTTCAACTGAAAAAGCCTAATGTAAGGATTGCATGGTTGCAGCGGCTGCAGTCAGTTGGCCCACCTTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

372

Amino Acids

42.65

Weight (kDa)

5.23

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 134 - 227 5.1e-31 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AciI CCGC 1 cut(s) 1087
AclWI GGATC 3 cut(s) 438, 626, 639
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 2 cut(s) 141, 681
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 2 cut(s) 897, 978
AfiI CCNNNNNNNGG 3 cut(s) 385, 1024, 1111
AgsI TTSAA 6 cut(s) 454, 518, 556, 838, 881, 1049
AjnI CCWGG 1 cut(s) 482
AloI GAACNNNNNNTCC 4 cut(s) 60, 92, 713, 745
AluBI AGCT 6 cut(s) 165, 372, 604, 701, 869, 922
AluI AGCT 6 cut(s) 165, 372, 604, 701, 869, 922
Alw26I GTCTC 3 cut(s) 327, 440, 773
AlwI GGATC 3 cut(s) 438, 626, 639
AlwNI CAGNNNCTG 1 cut(s) 1090
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 3 cut(s) 529, 672, 1102
ApeKI GCWGC 4 cut(s) 263, 701, 1084, 1090
ApoI RAATTY 1 cut(s) 647
Asp700I GAANNNNTTC 2 cut(s) 315, 1041
AspA2I CCTAGG 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 672, 1103
AsuC2I CCSGG 1 cut(s) 695
AsuHPI GGTGA 2 cut(s) 320, 472
AvaI CYCGRG 1 cut(s) 506
AvrII CCTAGG 1 cut(s) 467
BamHI GGATCC 1 cut(s) 631
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 4 cut(s) 250, 688, 1077, 1096
BccI CCATC 2 cut(s) 121, 621
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 484
BcnI CCSGG 1 cut(s) 695
BcoDI GTCTC 3 cut(s) 327, 440, 773
BfaI CTAG 3 cut(s) 351, 369, 468
BfmI CTRYAG 1 cut(s) 1091
BglII AGATCT 1 cut(s) 132
BisI GCNGC 5 cut(s) 264, 702, 1085, 1088, 1091
BlnI CCTAGG 1 cut(s) 467
BlsI GCNGC 5 cut(s) 265, 703, 1086, 1089, 1092
Bme1390I CCNGG 2 cut(s) 484, 695
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 672, 1103
BmiI GGNNCC 3 cut(s) 633, 723, 863
BmrFI CCNGG 2 cut(s) 484, 695
BmsI GCATC 6 cut(s) 238, 478, 836, 880, 949, 954
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 695
BsaBI GATNNNNATC 4 cut(s) 131, 228, 252, 993
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 4 cut(s) 467, 483, 532, 963
BsaWI WCCGGW 1 cut(s) 773
BsaXI ACNNNNNCTCC 2 cut(s) 772, 802
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 1024, 1111
Bse1I ACTGG 1 cut(s) 747
Bse8I GATNNNNATC 4 cut(s) 131, 228, 252, 993
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 4 cut(s) 467, 483, 532, 963
BseGI GGATG 7 cut(s) 132, 229, 253, 277, 374, 493, 632
BseJI GATNNNNATC 4 cut(s) 131, 228, 252, 993
BseLI CCNNNNNNNGG 3 cut(s) 385, 1024, 1111
BseMII CTCAG 3 cut(s) 234, 258, 740
BseNI ACTGG 1 cut(s) 747
BseXI GCAGC 4 cut(s) 250, 688, 1077, 1096
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 3 cut(s) 531, 674, 1104
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 2 cut(s) 695, 774
BslI CCNNNNNNNGG 3 cut(s) 385, 1024, 1111
BsmAI GTCTC 3 cut(s) 327, 440, 773
BsmI GAATGC 1 cut(s) 947
BsnI GGCC 3 cut(s) 531, 674, 1104
BsoBI CYCGRG 1 cut(s) 506
Bsp143I GATC 4 cut(s) 132, 430, 631, 988
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 1 cut(s) 1087
BspANI GGCC 3 cut(s) 531, 674, 1104
BspCNI CTCAG 3 cut(s) 235, 259, 739
BspLI GGNNCC 3 cut(s) 633, 723, 863
BspMAI CTGCAG 1 cut(s) 1095
BspPI GGATC 3 cut(s) 438, 626, 639
BsrI ACTGG 1 cut(s) 747
BssECI CCNNGG 4 cut(s) 467, 483, 532, 963
BssMI GATC 4 cut(s) 132, 430, 631, 988
BssNI GRCGYC 1 cut(s) 404
BssT1I CCWWGG 3 cut(s) 467, 532, 963
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 4 cut(s) 173, 552, 769, 953
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 404
BstAPI GCANNNNNTGC 1 cut(s) 1090
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 6 cut(s) 243, 267, 600, 682, 726, 795
BstDSI CCRYGG 1 cut(s) 963
BstENI CCTNNNNNAGG 1 cut(s) 1022
BstF5I GGATG 7 cut(s) 132, 229, 253, 277, 374, 493, 632
BstKTI GATC 4 cut(s) 135, 433, 634, 991
BstMAI GTCTC 3 cut(s) 327, 440, 773
BstMBI GATC 4 cut(s) 132, 430, 631, 988
BstMWI GCNNNNNNNGC 1 cut(s) 1090
BstNI CCWGG 1 cut(s) 484
BstSCI CCNGG 2 cut(s) 482, 693
BstSFI CTRYAG 1 cut(s) 1091
BstV1I GCAGC 4 cut(s) 250, 688, 1077, 1096
BstX2I RGATCY 3 cut(s) 132, 430, 631
BstYI RGATCY 3 cut(s) 132, 430, 631
BsuRI GGCC 3 cut(s) 531, 674, 1104
BtgI CCRYGG 1 cut(s) 963
BtsCI GGATG 7 cut(s) 132, 229, 253, 277, 374, 493, 632
BtsIMutI CAGTG 2 cut(s) 240, 732
Cac8I GCNNGC 1 cut(s) 408
CaiI CAGNNNCTG 1 cut(s) 1090
Cfr13I GGNCC 2 cut(s) 672, 1103
CseI GACGC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 896, 977
CviAII CATG 6 cut(s) 278, 287, 622, 856, 964, 1077
CviQI GTAC 2 cut(s) 896, 977
DdeI CTNAG 6 cut(s) 243, 267, 600, 682, 726, 795
DpnI GATC 4 cut(s) 134, 432, 633, 990
DpnII GATC 4 cut(s) 132, 430, 631, 988
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 3 cut(s) 467, 532, 963
Eco147I AGGCCT 1 cut(s) 531
Eco32I GATATC 1 cut(s) 571
Eco57I CTGAAG 2 cut(s) 141, 681
Eco88I CYCGRG 1 cut(s) 506
EcoNI CCTNNNNNAGG 1 cut(s) 1022
EcoRII CCWGG 1 cut(s) 482
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 3 cut(s) 467, 532, 963
EcoT22I ATGCAT 1 cut(s) 947
ErhI CCWWGG 3 cut(s) 467, 532, 963
FaeI CATG 6 cut(s) 281, 290, 625, 859, 967, 1080
FatI CATG 6 cut(s) 277, 286, 621, 855, 963, 1076
Fnu4HI GCNGC 5 cut(s) 264, 702, 1085, 1088, 1091
FokI GGATG 7 cut(s) 139, 236, 260, 284, 361, 500, 639
Fsp4HI GCNGC 5 cut(s) 264, 702, 1085, 1088, 1091
FspBI CTAG 3 cut(s) 351, 369, 468
GluI GCNGC 5 cut(s) 264, 702, 1085, 1088, 1091
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 3 cut(s) 531, 674, 1104
HapII CCGG 2 cut(s) 695, 774
HgaI GACGC 1 cut(s) 412
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 6 cut(s) 281, 290, 625, 859, 967, 1080
HinfI GANTC 6 cut(s) 116, 316, 509, 559, 591, 686
HpaII CCGG 2 cut(s) 695, 774
HphI GGTGA 2 cut(s) 320, 472
Hpy166II GTNNAC 3 cut(s) 37, 356, 732
Hpy188I TCNGA 4 cut(s) 121, 169, 190, 713
Hpy188III TCNNGA 5 cut(s) 400, 428, 506, 956, 1018
Hpy8I GTNNAC 3 cut(s) 37, 356, 732
HpyAV CCTTC 2 cut(s) 116, 448
HpyCH4III ACNGT 4 cut(s) 173, 552, 769, 953
HpyCH4V TGCA 9 cut(s) 184, 410, 656, 704, 827, 945, 1076, 1084, 1093
HpyF10VI GCNNNNNNNGC 1 cut(s) 1090
HpyF3I CTNAG 6 cut(s) 243, 267, 600, 682, 726, 795
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 6 cut(s) 281, 290, 625, 859, 967, 1080
Kzo9I GATC 4 cut(s) 132, 430, 631, 988
Lsp1109I GCAGC 4 cut(s) 250, 688, 1077, 1096
LweI GCATC 6 cut(s) 238, 478, 836, 880, 949, 954
MaeI CTAG 3 cut(s) 351, 369, 468
MaeIII GTNAC 3 cut(s) 27, 546, 769
MalI GATC 4 cut(s) 134, 432, 633, 990
MboI GATC 4 cut(s) 132, 430, 631, 988
MboII GAAGA 5 cut(s) 203, 455, 568, 674, 1037
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 3 cut(s) 132, 430, 631
MluCI AATT 6 cut(s) 86, 96, 345, 647, 817, 900
MlyI GAGTC 3 cut(s) 518, 600, 695
MmeI TCCRAC 1 cut(s) 168
Mph1103I ATGCAT 1 cut(s) 947
MroXI GAANNNNTTC 2 cut(s) 315, 1041
MseI TTAA 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 888
MspA1I CMGCKG 1 cut(s) 1087
MspI CCGG 2 cut(s) 695, 774
MspR9I CCNGG 2 cut(s) 484, 695
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 947
MvaI CCWGG 1 cut(s) 484
MwoI GCNNNNNNNGC 1 cut(s) 1090
NciI CCSGG 1 cut(s) 695
NcoI CCATGG 1 cut(s) 963
NdeII GATC 4 cut(s) 132, 430, 631, 988
NlaIII CATG 6 cut(s) 281, 290, 625, 859, 967, 1080
NlaIV GGNNCC 3 cut(s) 633, 723, 863
NmuCI GTSAC 1 cut(s) 27
NsiI ATGCAT 1 cut(s) 947
PaeR7I CTCGAG 1 cut(s) 506
PceI AGGCCT 1 cut(s) 531
PctI GAATGC 1 cut(s) 947
PdmI GAANNNNTTC 2 cut(s) 315, 1041
PfeI GAWTC 3 cut(s) 116, 316, 559
PkrI GCNGC 5 cut(s) 265, 703, 1086, 1089, 1092
PleI GAGTC 3 cut(s) 517, 599, 694
PpsI GAGTC 3 cut(s) 517, 599, 694
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 482
PspN4I GGNNCC 3 cut(s) 633, 723, 863
PspPI GGNCC 2 cut(s) 672, 1103
PsrI GAACNNNNNNTAC 2 cut(s) 754, 786
PstI CTGCAG 1 cut(s) 1095
PstNI CAGNNNCTG 1 cut(s) 1090
PsuI RGATCY 3 cut(s) 132, 430, 631
RsaI GTAC 2 cut(s) 897, 978
RsaNI GTAC 2 cut(s) 896, 977
RseI CAYNNNNRTG 1 cut(s) 888
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 5 cut(s) 264, 702, 1085, 1088, 1091
Sau3AI GATC 4 cut(s) 132, 430, 631, 988
Sau96I GGNCC 2 cut(s) 672, 1103
SchI GAGTC 3 cut(s) 518, 600, 695
ScrFI CCNGG 2 cut(s) 484, 695
SfaNI GCATC 6 cut(s) 238, 478, 836, 880, 949, 954
SfcI CTRYAG 1 cut(s) 1091
Sfr274I CTCGAG 1 cut(s) 506
SlaI CTCGAG 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 888
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 6 cut(s) 86, 96, 345, 647, 817, 900
SseBI AGGCCT 1 cut(s) 531
SsiI CCGC 1 cut(s) 1087
SspI AATATT 1 cut(s) 1041
SspMI CTAG 3 cut(s) 351, 369, 468
StuI AGGCCT 1 cut(s) 531
StyD4I CCNGG 2 cut(s) 482, 693
StyI CCWWGG 3 cut(s) 467, 532, 963
TaaI ACNGT 4 cut(s) 173, 552, 769, 953
TaqI TCGA 3 cut(s) 507, 821, 948
TasI AATT 6 cut(s) 86, 96, 345, 647, 817, 900
TauI GCSGC 1 cut(s) 1090
TfiI GAWTC 3 cut(s) 116, 316, 559
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 2 cut(s) 247, 739
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 4 cut(s) 263, 701, 1084, 1090
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 3 cut(s) 264, 275, 861
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 2 cut(s) 247, 739
XagI CCTNNNNNAGG 1 cut(s) 1022
XapI RAATTY 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 506
XmaJI CCTAGG 1 cut(s) 467
XmnI GAANNNNTTC 2 cut(s) 315, 1041
XspI CTAG 3 cut(s) 351, 369, 468
Zsp2I ATGCAT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.