AT5G05800
MYB Family

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
1742994 .. 1745245
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05800.1

Sequence Viewer

Length: 1350 bp
ATGAGGCCAAAAGCAGTGTGGGAGCCTGAGTATCACAGAGTGTTTGTTGATTTATGTGTGGAGCAAACGATGCTAGGGAATAAACCAGGGACACATTTTTCGAAAGAAGGTTGGAGGAACATATTGATATCGTTTCAGGAGCAAACAGGCGCCATGTACGATAGAATGCAGCTTAAGAACCATTGGGATACAATGAGCAGACAGTGGAAAATATGGCGTAGACTCGTTGAAACTAGTTTTATGAATTGGAACCCTGAGAGCAACAGGTTTCGTGCAACTGATGATGACTGGGCTAACTATTTACAGGAGAATCCTGATGCTGGGCAGTATCGGTTGAGTGTTCCGCATGATCTCAAGAAGCTAGAGATTCTCTTTGCGGGTTGTAATGTAGAGGTGAAAAATGATGAAGTCTCGGGTGTAAGGAAGAGGCGAAGAAGTTGTTACGAGGAAGAAGATGAAGATAACCAAAGCATGTGTAGTTCATCTAACCCTCAAACAAAAGGGTATTGGTCTCCGTCTACACATAAGCTGTTTCTTGATCTGTTGGTTCAAGAGACTTTAAAGGGAAATAGACCCGACACTCATTTTAACAAGGAAGGGTGGAAGACGATTCTGGGGACTATTAATGAAAATACCGGCCTTGGTTATACGAGACCGCAGCTGAAAAACCACTGGGATTGCACTAGGAAAGCTTGGAAGATCTGGTGTCAACTCGTTGGAGCAAGTAGCATGAAATGGGATCCTGAATCTCGTAGCTTTGGTGCAACAGAAGAGGAATGGCGAATCTATATTCGGGAAAACCCAAGAGCAGGACAATTCCGCCACAAGGAAGTTCCTCATGCTGATCAACTTGCAATCATTTTCAACGGAGTGATAGAACCTGGAGAGACATACACTCCTCCTTCGCGTTCGCGCAAGAAGCTCCTCCACAATCGTTCTGAATCACCACAATGGCGTGACACAACTCCATTATCAAAGATGCACGTAGATGAAGCAGAAACCTCCAGGCAAAATGGTTGTTATGCAGAGTCTCAAGAAGATCGGATAGACAGTGAAAACGCTCAACCATTGGATGATATGAAGTTAATGAATGACGTTATGTTGCAGGAAAGTCCGGTATTCGTTGAGATTGAATCGGCAAAGCCGATGTACAGCATTGGAGAATGCATTAAAAGCCTCAACGCAATTGAAGAGGTCGAACAAGGTAGTGAGCTCTACATGTTTGCGTTGGACCTGTTTCTGAAGAGAGAGTATAGAGAGATCTTCTTAGAGCTGAAGAAGCCCAGTTTGAGAATCGCATGGTTGCAGAGACTTCAATCTACTTCATTTCCTATTCCTACTACAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

449

Amino Acids

52.69

Weight (kDa)

5.97

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 7 - 100 1e-31 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 169 - 263 5.1e-32 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccI GTMKAC 2 cut(s) 220, 518
AccII CGCG 2 cut(s) 907, 913
AciI CCGC 4 cut(s) 344, 377, 656, 820
AclWI GGATC 2 cut(s) 734, 747
AcuI CTGAAG 2 cut(s) 1262, 1295
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 158, 1151
AfiI CCNNNNNNNGG 3 cut(s) 320, 809, 826
AflII CTTAAG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 1218
AgsI TTSAA 6 cut(s) 230, 551, 865, 1133, 1190, 1316
AhlI ACTAGT 1 cut(s) 233
AjnI CCWGG 3 cut(s) 85, 880, 1004
AluBI AGCT 9 cut(s) 172, 361, 529, 661, 692, 756, 922, 1213, 1273
AluI AGCT 9 cut(s) 172, 361, 529, 661, 692, 756, 922, 1213, 1273
Alw21I GWGCWC 1 cut(s) 1215
Alw26I GTCTC 7 cut(s) 415, 516, 548, 646, 881, 1035, 1303
AlwI GGATC 2 cut(s) 734, 747
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 2 cut(s) 5, 637
ApeKI GCWGC 2 cut(s) 169, 658
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AseI ATTAAT 1 cut(s) 624
AspLEI GCGC 2 cut(s) 152, 915
AspS9I GGNCC 1 cut(s) 1231
AsuHPI GGTGA 2 cut(s) 406, 936
AsuII TTCGAA 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 1 cut(s) 1231
BamHI GGATCC 1 cut(s) 739
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 1215
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 1215
BbvI GCAGC 2 cut(s) 181, 670
BciT130I CCWGG 3 cut(s) 87, 882, 1006
BciVI GTATCC 1 cut(s) 181
BclI TGATCA 1 cut(s) 844
BcoDI GTCTC 7 cut(s) 415, 516, 548, 646, 881, 1035, 1303
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 4 cut(s) 74, 234, 362, 684
BfoI RGCGCY 1 cut(s) 153
BfrI CTTAAG 1 cut(s) 173
BfuI GTATCC 1 cut(s) 181
BglII AGATCT 2 cut(s) 699, 1260
BisI GCNGC 2 cut(s) 170, 659
BlsI GCNGC 2 cut(s) 171, 660
Bme1390I CCNGG 3 cut(s) 87, 882, 1006
Bme18I GGWCC 1 cut(s) 1231
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 1231
BmiI GGNNCC 4 cut(s) 24, 151, 251, 741
BmrFI CCNGG 3 cut(s) 87, 882, 1006
BmrI ACTGGG 3 cut(s) 298, 682, 1278
BmsI GCATC 3 cut(s) 60, 307, 969
BmuI ACTGGG 3 cut(s) 298, 682, 1278
BpiI GAAGAC 1 cut(s) 611
BpmI CTGGAG 2 cut(s) 903, 988
Bpu14I TTCGAA 1 cut(s) 101
BpuEI CTTGAG 2 cut(s) 338, 1017
BsaAI YACGTR 1 cut(s) 985
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 2 cut(s) 516, 646
BsaJI CCNNGG 2 cut(s) 86, 640
BsaWI WCCGGW 1 cut(s) 1114
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 880, 910
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 809, 826
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 3 cut(s) 293, 677, 1284
BseBI CCWGG 3 cut(s) 87, 882, 1006
BseDI CCNNGG 2 cut(s) 86, 640
BseGI GGATG 1 cut(s) 1078
BseLI CCNNNNNNNGG 3 cut(s) 320, 809, 826
BseMII CTCAG 2 cut(s) 18, 246
BseNI ACTGG 3 cut(s) 293, 677, 1284
BseRI GAGGAG 2 cut(s) 888, 914
BseXI GCAGC 2 cut(s) 181, 670
BseYI CCCAGC 1 cut(s) 320
Bsh1236I CGCG 2 cut(s) 907, 913
BshFI GGCC 2 cut(s) 7, 639
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 1215
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 2 cut(s) 636, 1115
BslFI GGGAC 2 cut(s) 103, 631
BslI CCNNNNNNNGG 3 cut(s) 320, 809, 826
BsmAI GTCTC 7 cut(s) 415, 516, 548, 646, 881, 1035, 1303
BsmFI GGGAC 2 cut(s) 103, 631
BsmI GAATGC 2 cut(s) 171, 1169
BsnI GGCC 2 cut(s) 7, 639
Bso31I GGTCTC 2 cut(s) 516, 646
BsoBI CYCGRG 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 1215
Bsp1407I TGTACA 1 cut(s) 1149
Bsp143I GATC 7 cut(s) 349, 538, 699, 739, 844, 1039, 1260
BspACI CCGC 4 cut(s) 344, 377, 656, 820
BspANI GGCC 2 cut(s) 7, 639
BspCNI CTCAG 2 cut(s) 19, 247
BspFNI CGCG 2 cut(s) 907, 913
BspLI GGNNCC 4 cut(s) 24, 151, 251, 741
BspPI GGATC 2 cut(s) 734, 747
BspT104I TTCGAA 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 173
BspTNI GGTCTC 2 cut(s) 516, 646
BsrFI RCCGGY 1 cut(s) 635
BsrGI TGTACA 1 cut(s) 1149
BsrI ACTGG 3 cut(s) 293, 677, 1284
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 2 cut(s) 86, 640
BssMI GATC 7 cut(s) 349, 538, 699, 739, 844, 1039, 1260
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 3 cut(s) 87, 882, 1006
Bst4CI ACNGT 2 cut(s) 204, 1052
Bst6I CTCTTC 4 cut(s) 419, 765, 1185, 1238
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 1149
BstBAI YACGTR 1 cut(s) 985
BstBI TTCGAA 1 cut(s) 101
BstDEI CTNAG 3 cut(s) 27, 255, 1267
BstF5I GGATG 1 cut(s) 1078
BstFNI CGCG 2 cut(s) 907, 913
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 2 cut(s) 152, 915
BstKTI GATC 7 cut(s) 352, 541, 702, 742, 847, 1042, 1263
BstMAI GTCTC 7 cut(s) 415, 516, 548, 646, 881, 1035, 1303
BstMBI GATC 7 cut(s) 349, 538, 699, 739, 844, 1039, 1260
BstMWI GCNNNNNNNGC 4 cut(s) 70, 919, 1173, 1279
BstNI CCWGG 3 cut(s) 87, 882, 1006
BstNSI RCATGY 2 cut(s) 475, 1222
BstSCI CCNGG 3 cut(s) 85, 880, 1004
BstUI CGCG 2 cut(s) 907, 913
BstV1I GCAGC 2 cut(s) 181, 670
BstV2I GAAGAC 1 cut(s) 611
BstX2I RGATCY 3 cut(s) 699, 739, 1260
BstYI RGATCY 3 cut(s) 699, 739, 1260
BsuI GTATCC 1 cut(s) 181
BsuRI GGCC 2 cut(s) 7, 639
BtsCI GGATG 1 cut(s) 1078
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 4 cut(s) 21, 209, 670, 1057
CfoI GCGC 2 cut(s) 152, 915
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 1231
Csp6I GTAC 2 cut(s) 157, 1150
CspCI CAANNNNNGTGG 2 cut(s) 659, 694
CviAII CATG 7 cut(s) 154, 347, 472, 730, 839, 1219, 1299
CviQI GTAC 2 cut(s) 157, 1150
DdeI CTNAG 3 cut(s) 27, 255, 1267
DinI GGCGCC 1 cut(s) 151
DpnI GATC 7 cut(s) 351, 540, 701, 741, 846, 1041, 1262
DpnII GATC 7 cut(s) 349, 538, 699, 739, 844, 1039, 1260
DraI TTTAAA 1 cut(s) 561
DraIII CACNNNGTG 1 cut(s) 40
Eam1104I CTCTTC 4 cut(s) 419, 765, 1185, 1238
EarI CTCTTC 4 cut(s) 419, 765, 1185, 1238
EciI GGCGGA 1 cut(s) 809
Ecl136II GAGCTC 1 cut(s) 1213
Eco130I CCWWGG 1 cut(s) 640
Eco24I GRGCYC 1 cut(s) 1215
Eco31I GGTCTC 2 cut(s) 516, 646
Eco32I GATATC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 1231
Eco53kI GAGCTC 1 cut(s) 1213
Eco57I CTGAAG 2 cut(s) 1262, 1295
Eco88I CYCGRG 1 cut(s) 412
EcoICRI GAGCTC 1 cut(s) 1213
EcoRII CCWGG 3 cut(s) 85, 880, 1004
EcoRV GATATC 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 640
EcoT22I ATGCAT 1 cut(s) 1169
EcoT38I GRGCYC 1 cut(s) 1215
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 7 cut(s) 157, 350, 475, 733, 842, 1222, 1302
FaqI GGGAC 2 cut(s) 103, 631
FatI CATG 7 cut(s) 153, 346, 471, 729, 838, 1218, 1298
FauI CCCGC 1 cut(s) 370
FbaI TGATCA 1 cut(s) 844
FblI GTMKAC 2 cut(s) 220, 518
Fnu4HI GCNGC 2 cut(s) 170, 659
FokI GGATG 1 cut(s) 1085
FriOI GRGCYC 1 cut(s) 1215
Fsp4HI GCNGC 2 cut(s) 170, 659
FspBI CTAG 4 cut(s) 74, 234, 362, 684
GlaI GCGC 2 cut(s) 151, 914
GluI GCNGC 2 cut(s) 170, 659
GsaI CCCAGC 1 cut(s) 324
GsuI CTGGAG 2 cut(s) 903, 988
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 2 cut(s) 7, 639
HapII CCGG 2 cut(s) 636, 1115
HhaI GCGC 2 cut(s) 152, 915
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 7 cut(s) 157, 350, 475, 733, 842, 1222, 1302
Hin6I GCGC 2 cut(s) 150, 913
HinP1I GCGC 2 cut(s) 150, 913
HincII GTYRAC 1 cut(s) 710
HindII GTYRAC 1 cut(s) 710
HindIII AAGCTT 1 cut(s) 690
HpaII CCGG 2 cut(s) 636, 1115
HphI GGTGA 2 cut(s) 406, 936
Hpy166II GTNNAC 3 cut(s) 221, 519, 710
Hpy188I TCNGA 3 cut(s) 940, 1044, 1242
Hpy188III TCNNGA 8 cut(s) 137, 314, 355, 536, 551, 743, 794, 1034
Hpy8I GTNNAC 3 cut(s) 221, 519, 710
HpyAV CCTTC 3 cut(s) 101, 590, 912
HpyCH4III ACNGT 2 cut(s) 204, 1052
HpyCH4IV ACGT 2 cut(s) 984, 1095
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 919, 1173, 1279
HpyF3I CTNAG 3 cut(s) 27, 255, 1267
HpySE526I ACGT 2 cut(s) 984, 1095
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 7 cut(s) 157, 350, 475, 733, 842, 1222, 1302
HspAI GCGC 2 cut(s) 150, 913
KasI GGCGCC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 7 cut(s) 349, 538, 699, 739, 844, 1039, 1260
LmnI GCTCC 5 cut(s) 22, 61, 139, 719, 927
Lsp1109I GCAGC 2 cut(s) 181, 670
LweI GCATC 3 cut(s) 60, 307, 969
MaeI CTAG 4 cut(s) 74, 234, 362, 684
MaeII ACGT 2 cut(s) 984, 1095
MaeIII GTNAC 2 cut(s) 440, 956
MalI GATC 7 cut(s) 351, 540, 701, 741, 846, 1041, 1262
MboI GATC 7 cut(s) 349, 538, 699, 739, 844, 1039, 1260
MfeI CAATTG 1 cut(s) 1185
MflI RGATCY 3 cut(s) 699, 739, 1260
MhlI GDGCHC 1 cut(s) 1215
MluCI AATT 3 cut(s) 244, 815, 1185
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 2 cut(s) 216, 1037
MmeI TCCRAC 3 cut(s) 92, 697, 1209
Mph1103I ATGCAT 1 cut(s) 1169
MseI TTAA 6 cut(s) 174, 560, 588, 624, 1085, 1170
MslI CAYNNNNRTG 2 cut(s) 949, 987
MspA1I CMGCKG 1 cut(s) 661
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 636, 1115
MspR9I CCNGG 3 cut(s) 87, 882, 1006
MunI CAATTG 1 cut(s) 1185
Mva1269I GAATGC 2 cut(s) 171, 1169
MvaI CCWGG 3 cut(s) 87, 882, 1006
MvnI CGCG 2 cut(s) 907, 913
MwoI GCNNNNNNNGC 4 cut(s) 70, 919, 1173, 1279
NarI GGCGCC 1 cut(s) 150
NdeII GATC 7 cut(s) 349, 538, 699, 739, 844, 1039, 1260
NlaIII CATG 7 cut(s) 157, 350, 475, 733, 842, 1222, 1302
NlaIV GGNNCC 4 cut(s) 24, 151, 251, 741
NmuCI GTSAC 1 cut(s) 956
NsiI ATGCAT 1 cut(s) 1169
NspI RCATGY 2 cut(s) 475, 1222
NspV TTCGAA 1 cut(s) 101
PciI ACATGT 1 cut(s) 1218
PcsI WCGNNNNNNNCGW 1 cut(s) 1142
PctI GAATGC 2 cut(s) 171, 1169
PfeI GAWTC 8 cut(s) 310, 367, 610, 746, 783, 941, 1133, 1293
PkrI GCNGC 2 cut(s) 171, 660
PleI GAGTC 2 cut(s) 216, 1036
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 2 cut(s) 216, 1036
Ppu21I YACGTR 1 cut(s) 985
PscI ACATGT 1 cut(s) 1218
PshBI ATTAAT 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 1215
Psp6I CCWGG 3 cut(s) 85, 880, 1004
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 3 cut(s) 85, 880, 1004
PspN4I GGNNCC 4 cut(s) 24, 151, 251, 741
PspPI GGNCC 1 cut(s) 1231
PsuI RGATCY 3 cut(s) 699, 739, 1260
PvuII CAGCTG 1 cut(s) 661
RsaI GTAC 2 cut(s) 158, 1151
RsaNI GTAC 2 cut(s) 157, 1150
RseI CAYNNNNRTG 2 cut(s) 949, 987
SacI GAGCTC 1 cut(s) 1215
SaqAI TTAA 6 cut(s) 174, 560, 588, 624, 1085, 1170
SatI GCNGC 2 cut(s) 170, 659
Sau3AI GATC 7 cut(s) 349, 538, 699, 739, 844, 1039, 1260
Sau96I GGNCC 1 cut(s) 1231
SchI GAGTC 2 cut(s) 216, 1037
ScrFI CCNGG 3 cut(s) 87, 882, 1006
SduI GDGCHC 1 cut(s) 1215
SfaNI GCATC 3 cut(s) 60, 307, 969
SfoI GGCGCC 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 101
SinI GGWCC 1 cut(s) 1231
SmiMI CAYNNNNRTG 2 cut(s) 949, 987
SmlI CTYRAG 3 cut(s) 173, 353, 1032
SmoI CTYRAG 3 cut(s) 173, 353, 1032
SpeI ACTAGT 1 cut(s) 233
Sse9I AATT 3 cut(s) 244, 815, 1185
SsiI CCGC 4 cut(s) 344, 377, 656, 820
SspDI GGCGCC 1 cut(s) 149
SspMI CTAG 4 cut(s) 74, 234, 362, 684
SstI GAGCTC 1 cut(s) 1215
StyD4I CCNGG 3 cut(s) 85, 880, 1004
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 204, 1052
TaiI ACGT 2 cut(s) 987, 1098
TaqI TCGA 2 cut(s) 101, 1197
TasI AATT 3 cut(s) 244, 815, 1185
TatI WGTACW 1 cut(s) 1149
TfiI GAWTC 8 cut(s) 310, 367, 610, 746, 783, 941, 1133, 1293
Tru1I TTAA 6 cut(s) 174, 560, 588, 624, 1085, 1170
Tru9I TTAA 6 cut(s) 174, 560, 588, 624, 1085, 1170
TscAI CASTG 4 cut(s) 21, 209, 677, 1057
TseFI GTSAC 1 cut(s) 956
TseI GCWGC 2 cut(s) 169, 658
Tsp45I GTSAC 1 cut(s) 956
TspGWI ACGGA 2 cut(s) 504, 882
TspRI CASTG 4 cut(s) 21, 209, 677, 1057
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 1231
VspI ATTAAT 1 cut(s) 624
XceI RCATGY 2 cut(s) 475, 1222
XcmI CCANNNNNNNNNTGG 1 cut(s) 15
XmiI GTMKAC 2 cut(s) 220, 518
XspI CTAG 4 cut(s) 74, 234, 362, 684
Zsp2I ATGCAT 1 cut(s) 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.