pycom01g16540
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0006444
Physical Location & Seq
Forward (+)
16083983 .. 16085524
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16540.1

Sequence Viewer

Length: 1353 bp
ATGTATAGCTCAACAAGATCAAAAGCTACCTGGACTCCGGGGCACCGGAAGGTATTCTTTGATCTTTGTCTAGAAGAGATGGACAAAGGGAATAAGCCGGGTACACACTTTACTAAGGTGGGTTGGAGGAATCTCATCCAAGGGTTCTACGAGCAGACGGGTTTAAGGTACACCAAGAAGCAAATGAAAAATCATTGGGATTTCACCAAGAAGCAATGGAAAGTTTGGGTTAAGCTCATCGACGAGAGTAGTATGAAGTGGGATCCTACGACCAATCAATTTGGTGCTAGTGCAGAAGAATGGGCTAACTACATACAGGTGAACCCCGAAGCTGCACAGTTTCAGCATAAGGAAATCCCGTGCCCTGACCTATTGGAAATCCTTTTTGTTGGCACTACGGATTCTGGGGACATGGAACCTTGTGATTCTCAGAGGAGGCAAAGCAATAGCTCAGACAACTCCTTTCTGCACTCAGAAGAACAAGATTTGGTTACTGTGGAGCTGGGAGAGGAGCATGTTTCAAACGCTGTTCCATTGAGGAGTTACGTGGCTCAATCTGAACACCGTCTAACAACTGCAAGTGAGCAGAGCATATCTAGCTCATCCCATTCAAAGGCAAAGGCCATTTGGTCGCCTGCATCCCACGGTGTATTTATTGATCTCTGTCTAGAAGAGACATTGAAAGGGAACAAACCTGGGACACATTTTACCAGGGACGCTTGGAGGACTATTGTTGAATCATTTAACCAAAAAACTGGCCTTATGTATGACAGGTTGCAGCTGAAGAATCATTGGGATGTCACCAAGGAACAATGGAGAAACTGGTGTAAGCTAATTGGCACAACTAGTATGGGTTGGAATCCGAACACCAGACAATTTGGAGCAAATGATGAAGATTGGGCCAGTTACTTAGAGACTGACCCCGAAGCTGCTTCATTCCGCTTTAAGGAACCTCAATGCGCCGACAAACTGGAAATCATATTTGACGGAACAATAGATACCGGAGAGACAGAGCCTCATGCTAAGCGTAGGAAGTACAACGATAACTTGAGTACATCCGTTTTGCATATAGAAGAAGATGGAGGCATAGCGAATCAAGAGGAGAACAACGTTGAGCAACTGGATGCCGTAACATTTGCTCTTGCACAAGGCAAACCCACTTATAGCATCGGGGAGTGCATCAACTGTCTTGATGCCATGGAGGAAGTAGAACAAGGAAGTGATCTCTATTTGTTTGCATTAGATGTATTCCTGAAAAAGGAATACAGGGAAATATTTCTTCAACTGAAGAGGCCTAGTGTAAGAATTGCTTGGTTGCAGCGGCTGCAATCCGTCGGCCCGCCTTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

451

Amino Acids

51.69

Weight (kDa)

5.36

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 10 - 104 2.6e-27 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 210 - 303 1.6e-30 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 42
AciI CCGC 3 cut(s) 940, 1321, 1340
AclI AACGTT 1 cut(s) 1110
AclWI GGATC 2 cut(s) 257, 270
AcuI CTGAAG 2 cut(s) 803, 1307
AfaI GTAC 4 cut(s) 103, 170, 1037, 1054
AfiI CCNNNNNNNGG 3 cut(s) 613, 946, 1258
AgsI TTSAA 5 cut(s) 522, 612, 682, 737, 1283
AhlI ACTAGT 1 cut(s) 845
AjnI CCWGG 3 cut(s) 29, 694, 710
Alw26I GTCTC 3 cut(s) 668, 908, 1001
AlwI GGATC 2 cut(s) 257, 270
AlwNI CAGNNNCTG 1 cut(s) 1324
AoxI GGCC 5 cut(s) 621, 757, 900, 1292, 1336
ApeKI GCWGC 5 cut(s) 332, 778, 929, 1318, 1324
Asp700I GAANNNNTTC 2 cut(s) 53, 1275
AspLEI GCGC 1 cut(s) 962
AspS9I GGNCC 2 cut(s) 900, 1337
AsuC2I CCSGG 2 cut(s) 39, 99
AsuHPI GGTGA 3 cut(s) 196, 331, 793
BaeGI GKGCMC 2 cut(s) 45, 365
BamHI GGATCC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 42
BbvI GCAGC 5 cut(s) 319, 790, 916, 1311, 1330
BccI CCATC 2 cut(s) 73, 1073
BceAI ACGGC 1 cut(s) 1112
BciT130I CCWGG 3 cut(s) 31, 696, 712
BcnI CCSGG 2 cut(s) 39, 99
BcoDI GTCTC 3 cut(s) 668, 908, 1001
BcuI ACTAGT 1 cut(s) 845
BfaI CTAG 7 cut(s) 71, 288, 597, 668, 846, 1296, 1351
BisI GCNGC 6 cut(s) 333, 779, 930, 1319, 1322, 1325
BlpI GCTNAGC 1 cut(s) 1023
BlsI GCNGC 6 cut(s) 334, 780, 931, 1320, 1323, 1326
Bme1390I CCNGG 5 cut(s) 31, 39, 99, 696, 712
BmgT120I GGNCC 2 cut(s) 900, 1337
BmiI GGNNCC 4 cut(s) 44, 264, 417, 951
BmrFI CCNGG 5 cut(s) 31, 39, 99, 696, 712
BmsI GCATC 5 cut(s) 647, 1114, 1176, 1183, 1188
Bpu1102I GCTNAGC 1 cut(s) 1023
BpuEI CTTGAG 1 cut(s) 1069
BpuMI CCSGG 2 cut(s) 39, 99
BsaAI YACGTR 1 cut(s) 547
BsaJI CCNNGG 7 cut(s) 38, 139, 643, 695, 711, 804, 1197
BsaWI WCCGGW 2 cut(s) 45, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 3 cut(s) 613, 946, 1258
Bse1I ACTGG 5 cut(s) 760, 827, 903, 975, 1125
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 3 cut(s) 31, 696, 712
BseDI CCNNGG 7 cut(s) 38, 139, 643, 695, 711, 804, 1197
BseGI GGATG 6 cut(s) 135, 602, 638, 802, 1055, 1129
BseLI CCNNNNNNNGG 3 cut(s) 613, 946, 1258
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 3 cut(s) 443, 465, 486
BseNI ACTGG 5 cut(s) 760, 827, 903, 975, 1125
BseRI GAGGAG 4 cut(s) 448, 524, 553, 1115
BseSI GKGCMC 2 cut(s) 45, 365
BseXI GCAGC 5 cut(s) 319, 790, 916, 1311, 1330
BseYI CCCAGC 1 cut(s) 502
BsgI GTGCAG 3 cut(s) 312, 318, 452
BshFI GGCC 5 cut(s) 623, 759, 902, 1294, 1338
BshNI GGYRCC 1 cut(s) 42
BsiSI CCGG 4 cut(s) 38, 46, 98, 1002
BslFI GGGAC 3 cut(s) 422, 712, 728
BslI CCNNNNNNNGG 3 cut(s) 613, 946, 1258
BsmAI GTCTC 3 cut(s) 668, 908, 1001
BsmFI GGGAC 3 cut(s) 422, 712, 728
BsnI GGCC 5 cut(s) 623, 759, 902, 1294, 1338
Bsp1286I GDGCHC 2 cut(s) 45, 365
Bsp143I GATC 5 cut(s) 17, 61, 262, 658, 1222
Bsp1720I GCTNAGC 1 cut(s) 1023
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 3 cut(s) 940, 1321, 1340
BspANI GGCC 5 cut(s) 623, 759, 902, 1294, 1338
BspCNI CTCAG 3 cut(s) 442, 464, 485
BspLI GGNNCC 4 cut(s) 44, 264, 417, 951
BspPI GGATC 2 cut(s) 257, 270
BspT107I GGYRCC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 5 cut(s) 760, 827, 903, 975, 1125
BssECI CCNNGG 7 cut(s) 38, 139, 643, 695, 711, 804, 1197
BssMI GATC 5 cut(s) 17, 61, 262, 658, 1222
BssT1I CCWWGG 3 cut(s) 139, 804, 1197
Bst2UI CCWGG 3 cut(s) 31, 696, 712
Bst4CI ACNGT 5 cut(s) 339, 496, 566, 647, 1187
Bst6I CTCTTC 3 cut(s) 69, 666, 1283
BstAPI GCANNNNNTGC 1 cut(s) 1324
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 636, 1340
BstDEI CTNAG 6 cut(s) 114, 429, 451, 472, 910, 1023
BstDSI CCRYGG 2 cut(s) 643, 1197
BstENI CCTNNNNNAGG 1 cut(s) 1256
BstF5I GGATG 6 cut(s) 135, 602, 638, 802, 1055, 1129
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 5 cut(s) 20, 64, 265, 661, 1225
BstMAI GTCTC 3 cut(s) 668, 908, 1001
BstMBI GATC 5 cut(s) 17, 61, 262, 658, 1222
BstMWI GCNNNNNNNGC 2 cut(s) 597, 1324
BstNI CCWGG 3 cut(s) 31, 696, 712
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 5 cut(s) 29, 37, 97, 694, 710
BstSLI GKGCMC 2 cut(s) 45, 365
BstV1I GCAGC 5 cut(s) 319, 790, 916, 1311, 1330
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 755
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 5 cut(s) 623, 759, 902, 1294, 1338
BtgI CCRYGG 2 cut(s) 643, 1197
BtsCI GGATG 6 cut(s) 135, 602, 638, 802, 1055, 1129
Cac8I GCNNGC 2 cut(s) 636, 1340
CaiI CAGNNNCTG 1 cut(s) 1324
CfoI GCGC 1 cut(s) 962
Cfr13I GGNCC 2 cut(s) 900, 1337
CseI GACGC 1 cut(s) 725
Csp6I GTAC 4 cut(s) 102, 169, 1036, 1053
CviAII CATG 4 cut(s) 412, 515, 1019, 1198
CviQI GTAC 4 cut(s) 102, 169, 1036, 1053
DdeI CTNAG 6 cut(s) 114, 429, 451, 472, 910, 1023
DpnI GATC 5 cut(s) 19, 63, 264, 660, 1224
DpnII GATC 5 cut(s) 17, 61, 262, 658, 1222
Eam1104I CTCTTC 3 cut(s) 69, 666, 1283
EarI CTCTTC 3 cut(s) 69, 666, 1283
Eco130I CCWWGG 3 cut(s) 139, 804, 1197
Eco147I AGGCCT 1 cut(s) 1294
Eco57I CTGAAG 2 cut(s) 803, 1307
EcoNI CCTNNNNNAGG 1 cut(s) 1256
EcoRII CCWGG 3 cut(s) 29, 694, 710
EcoT14I CCWWGG 3 cut(s) 139, 804, 1197
ErhI CCWWGG 3 cut(s) 139, 804, 1197
FaeI CATG 4 cut(s) 415, 518, 1022, 1201
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 1294, 1326
FaqI GGGAC 3 cut(s) 422, 712, 728
FatI CATG 4 cut(s) 411, 514, 1018, 1197
FauI CCCGC 1 cut(s) 1347
Fnu4HI GCNGC 6 cut(s) 333, 779, 930, 1319, 1322, 1325
FokI GGATG 6 cut(s) 122, 589, 625, 809, 1042, 1136
Fsp4HI GCNGC 6 cut(s) 333, 779, 930, 1319, 1322, 1325
FspBI CTAG 7 cut(s) 71, 288, 597, 668, 846, 1296, 1351
GlaI GCGC 1 cut(s) 961
GluI GCNGC 6 cut(s) 333, 779, 930, 1319, 1322, 1325
GsaI CCCAGC 1 cut(s) 506
HaeIII GGCC 5 cut(s) 623, 759, 902, 1294, 1338
HapII CCGG 4 cut(s) 38, 46, 98, 1002
HgaI GACGC 1 cut(s) 725
HhaI GCGC 1 cut(s) 962
Hin1II CATG 4 cut(s) 415, 518, 1022, 1201
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HinfI GANTC 8 cut(s) 34, 130, 401, 425, 737, 787, 859, 1093
HpaII CCGG 4 cut(s) 38, 46, 98, 1002
HphI GGTGA 3 cut(s) 196, 331, 793
Hpy166II GTNNAC 3 cut(s) 104, 171, 322
Hpy188I TCNGA 5 cut(s) 432, 454, 475, 559, 864
Hpy188III TCNNGA 5 cut(s) 71, 668, 1097, 1190, 1252
Hpy8I GTNNAC 3 cut(s) 104, 171, 322
Hpy99I CGWCG 2 cut(s) 245, 1337
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 5 cut(s) 339, 496, 566, 647, 1187
HpyCH4IV ACGT 2 cut(s) 546, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 597, 1324
HpyF3I CTNAG 6 cut(s) 114, 429, 451, 472, 910, 1023
HpySE526I ACGT 2 cut(s) 546, 1110
Hsp92II CATG 4 cut(s) 415, 518, 1022, 1201
HspAI GCGC 1 cut(s) 960
Kzo9I GATC 5 cut(s) 17, 61, 262, 658, 1222
LmnI GCTCC 3 cut(s) 499, 511, 881
Lsp1109I GCAGC 5 cut(s) 319, 790, 916, 1311, 1330
LweI GCATC 5 cut(s) 647, 1114, 1176, 1183, 1188
MaeI CTAG 7 cut(s) 71, 288, 597, 668, 846, 1296, 1351
MaeII ACGT 2 cut(s) 546, 1110
MaeIII GTNAC 5 cut(s) 490, 542, 799, 905, 1129
MalI GATC 5 cut(s) 19, 63, 264, 660, 1224
MboI GATC 5 cut(s) 17, 61, 262, 658, 1222
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 45, 365
MluCI AATT 4 cut(s) 278, 834, 875, 1305
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 2 cut(s) 104, 836
MroXI GAANNNNTTC 2 cut(s) 53, 1275
MseI TTAA 4 cut(s) 164, 231, 744, 945
MslI CAYNNNNRTG 2 cut(s) 317, 795
MspA1I CMGCKG 2 cut(s) 781, 1321
MspI CCGG 4 cut(s) 38, 46, 98, 1002
MspR9I CCNGG 5 cut(s) 31, 39, 99, 696, 712
MvaI CCWGG 3 cut(s) 31, 696, 712
MwoI GCNNNNNNNGC 2 cut(s) 597, 1324
NciI CCSGG 2 cut(s) 39, 99
NcoI CCATGG 1 cut(s) 1197
NdeII GATC 5 cut(s) 17, 61, 262, 658, 1222
NlaIII CATG 4 cut(s) 415, 518, 1022, 1201
NlaIV GGNNCC 4 cut(s) 44, 264, 417, 951
NmuCI GTSAC 1 cut(s) 799
NspI RCATGY 1 cut(s) 518
PceI AGGCCT 1 cut(s) 1294
PdmI GAANNNNTTC 2 cut(s) 53, 1275
PfeI GAWTC 7 cut(s) 130, 401, 425, 737, 787, 859, 1093
PkrI GCNGC 6 cut(s) 334, 780, 931, 1320, 1323, 1326
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 547
Psp1406I AACGTT 1 cut(s) 1110
Psp6I CCWGG 3 cut(s) 29, 694, 710
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 3 cut(s) 29, 694, 710
PspN4I GGNNCC 4 cut(s) 44, 264, 417, 951
PspPI GGNCC 2 cut(s) 900, 1337
PsrI GAACNNNNNNTAC 2 cut(s) 982, 1014
PstNI CAGNNNCTG 1 cut(s) 1324
PsuI RGATCY 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 781
RsaI GTAC 4 cut(s) 103, 170, 1037, 1054
RsaNI GTAC 4 cut(s) 102, 169, 1036, 1053
RseI CAYNNNNRTG 2 cut(s) 317, 795
SaqAI TTAA 4 cut(s) 164, 231, 744, 945
SatI GCNGC 6 cut(s) 333, 779, 930, 1319, 1322, 1325
Sau3AI GATC 5 cut(s) 17, 61, 262, 658, 1222
Sau96I GGNCC 2 cut(s) 900, 1337
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 5 cut(s) 31, 39, 99, 696, 712
SduI GDGCHC 2 cut(s) 45, 365
SfaNI GCATC 5 cut(s) 647, 1114, 1176, 1183, 1188
SmiMI CAYNNNNRTG 2 cut(s) 317, 795
SmlI CTYRAG 1 cut(s) 1048
SmoI CTYRAG 1 cut(s) 1048
SpeI ACTAGT 1 cut(s) 845
Sse9I AATT 4 cut(s) 278, 834, 875, 1305
SseBI AGGCCT 1 cut(s) 1294
SsiI CCGC 3 cut(s) 940, 1321, 1340
SspI AATATT 1 cut(s) 1275
SspMI CTAG 7 cut(s) 71, 288, 597, 668, 846, 1296, 1351
StuI AGGCCT 1 cut(s) 1294
StyD4I CCNGG 5 cut(s) 29, 37, 97, 694, 710
StyI CCWWGG 3 cut(s) 139, 804, 1197
TaaI ACNGT 5 cut(s) 339, 496, 566, 647, 1187
TaiI ACGT 2 cut(s) 549, 1113
TaqI TCGA 1 cut(s) 240
TasI AATT 4 cut(s) 278, 834, 875, 1305
TatI WGTACW 2 cut(s) 1035, 1052
TauI GCSGC 1 cut(s) 1324
TfiI GAWTC 7 cut(s) 130, 401, 425, 737, 787, 859, 1093
Tru1I TTAA 4 cut(s) 164, 231, 744, 945
Tru9I TTAA 4 cut(s) 164, 231, 744, 945
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 5 cut(s) 332, 778, 929, 1318, 1324
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 4 cut(s) 200, 269, 906, 924
TspGWI ACGGA 4 cut(s) 413, 1002, 1048, 1321
XagI CCTNNNNNAGG 1 cut(s) 1256
XbaI TCTAGA 2 cut(s) 70, 667
XceI RCATGY 1 cut(s) 518
XmnI GAANNNNTTC 2 cut(s) 53, 1275
XspI CTAG 7 cut(s) 71, 288, 597, 668, 846, 1296, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.