Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006444

Physical Location & Seq

Genomic Coordinates Forward (+)

26266042 .. 26269400

Gene Structure 3359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGCTTAGCCCATCAACCCCAAAAGCCACTTGGACGCCGGGGCACCGCAAAATATTTTTTGATCTTTGCCTGGAAGAGATGTCAAAAGGGAATAAGCCGGGGACGCATTTCACTAAGGAGGGTTGGAGGAATCTTATTGAATCATTCTATGAAAAGACAGGTATAAGGTATAGTAAGAGACAAATGAAGAATCATTGGGATTTCACCAAGAAGCAGTGGAAAGTCTGGGTTAAGCTAATTGCTGAAGTTAGTATGAAATGGGATCCAAGTACCAATGGATTTGGTGCTAGTGCAGAAGATTGGGCTAACTACGTACAGGTAAACCCAGAAGCTGCACAGTTTCAGTATAAAGAACTCCCATGCCCTGACATACTGGAAATCGTTTTTGCTGGAACTATGGATTCTGAAGATATGGAACCTTCTAATTCTCGGAGGCAAAGTAATAGCTCGGACACCTCCCTTCTGCACTCCGAAGAACAAGAGTTAGTGACTGTGGAGGGGGGAGATGAGCATCTTTCGAATGCCATTCCCTTAAGGAGTTATGAAATGGGTCAGTCTAAACACCGTAGAACAACTGCAAGTGAGCAGAGTATATCTAGCTCATCCCAGCCAAAGACAAAGGCCATTTGGATGCCTGCAACCCATGAAGTATTTCTTGATCTATGTCTAGAAGAGGCATTAAAGGGGAATAAACCCGGGACACATTTTACCAAGGACGGTTGGAGGACTATTGTTGAATCCTTTCAACAAAAAACTGGCCTTATGTATAATAGGTTACAGTTGAAGAACCACTGGGATATCACCAAGGAACAATGGAAAGTCTGGTGTAAGCTAATTGGCACAAGTAGTATGGGTTGGAATCCAAACAGCAGAAGATTTTCAGCAAATGATGAAGATTGGGCCAACTACTTAGAGACAGACCCAGAAGCTGCACCATTCCGCTTTAAGGAACCTCAATCCACCGACAAGTTGGAAACCATATTTGATGGAACAACAGTTACAGGAGAGACAGAGCCCCCTGCTAGGCGGAGGAAGTTTAATCATGATTTGAGTGCATCTCTTTTGCATATAGAAGAAGCAGGCACAGTGAACCGAGAGAGGGACGTTGAGCATCTTGATGCTGTAACAGTTTCTTTTATGCCTGGCAAGCAAACTTATAGTATTGGGGAGTGCATTGCCTGTCTTGATGCCATGGAGGACGTAGAACAAGGAAGCGAGCTCTATTTGTTTGCATTAGATGTATTTCTGAAAAAGGAATACAGGGAAATATTTCTTCAACTGAAAAAGCCTAGTGTAAGGATTGCATGGTTGCAGCGGCTGCAATCTGTTGGTCCTCCATTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

449

Amino Acids

51.51

Weight (kDa)

5.83

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19220 AT3G11290 AT3G11290 AT3G11310 AT5G05800 AT5G05800 AT5G05800 AT5G05800 AT5G05800
fragaria_vesca	FvH4_7g23930 FvH4_7g23930
malus_domestica	MD01G1146000.v1.1
prunus_persica	Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1
pyrus_communis	pycom01g16540
rosa_chinensis	RchiOBHm_Chr1g0369261
rosa_multiflora	Rmu_co8372517.1_g000001 Rmu_sc0001482.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287810
rosa_rugosa	Rorug01G0349400
rosa_samantha	Rh1AG356300 Rh1BG320000 Rh1CG333900 Rh1DG350600
rosa_wichuraiana	Rw1G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	4 cut(s)	46, 940, 1027, 1315
AclWI	GGATC	2 cut(s)	257, 270
AcuI	CTGAAG	2 cut(s)	264, 426
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	271, 315
AfiI	CCNNNNNNNGG	3 cut(s)	946, 1023, 1099
AflII	CTTAAG	1 cut(s)	532
AgsI	TTSAA	5 cut(s)	140, 737, 746, 784, 1277
AjnI	CCWGG	2 cut(s)	69, 1141
AluBI	AGCT	7 cut(s)	235, 332, 447, 600, 832, 929, 1219
AluI	AGCT	7 cut(s)	235, 332, 447, 600, 832, 929, 1219
Alw21I	GWGCWC	1 cut(s)	1221
Alw26I	GTCTC	3 cut(s)	172, 908, 1001
AlwI	GGATC	2 cut(s)	257, 270
AlwNI	CAGNNNCTG	3 cut(s)	332, 929, 1318
Ama87I	CYCGRG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	621, 757, 900
ApeKI	GCWGC	4 cut(s)	332, 929, 1312, 1318
Asp700I	GAANNNNTTC	4 cut(s)	651, 741, 877, 1269
AspS9I	GGNCC	2 cut(s)	900, 1331
AsuC2I	CCSGG	4 cut(s)	39, 99, 696, 697
AsuHPI	GGTGA	2 cut(s)	196, 793
AsuII	TTCGAA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	695
AvaII	GGWCC	1 cut(s)	1331
BaeGI	GKGCMC	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	2 cut(s)	1017, 1221
Bbv12I	GWGCWC	1 cut(s)	1221
BbvI	GCAGC	4 cut(s)	319, 916, 1305, 1324
BccI	CCATC	2 cut(s)	19, 980
BciT130I	CCWGG	2 cut(s)	71, 1143
BcnI	CCSGG	4 cut(s)	39, 99, 696, 697
BcoDI	GTCTC	3 cut(s)	172, 908, 1001
BfaI	CTAG	6 cut(s)	288, 597, 668, 1023, 1290, 1345
BfrI	CTTAAG	1 cut(s)	532
BisI	GCNGC	5 cut(s)	333, 930, 1313, 1316, 1319
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	5 cut(s)	334, 931, 1314, 1317, 1320
Bme1390I	CCNGG	6 cut(s)	39, 71, 99, 696, 697, 1143
Bme18I	GGWCC	1 cut(s)	1331
BmeT110I	CYCGRG	1 cut(s)	695
BmgT120I	GGNCC	2 cut(s)	900, 1331
BmiI	GGNNCC	4 cut(s)	44, 264, 417, 951
BmrFI	CCNGG	6 cut(s)	39, 71, 99, 696, 697, 1143
BmrI	ACTGGG	1 cut(s)	802
BmsI	GCATC	6 cut(s)	520, 621, 1064, 1108, 1120, 1177
BmuI	ACTGGG	1 cut(s)	802
BplI	GAGNNNNNCTC	2 cut(s)	1042, 1074
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	518
BpuMI	CCSGG	4 cut(s)	39, 99, 696, 697
BsaAI	YACGTR	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	6 cut(s)	38, 98, 695, 711, 804, 1191
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	946, 1023, 1099
Bse1I	ACTGG	3 cut(s)	378, 760, 797
Bse3DI	GCAATG	1 cut(s)	1173
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	2 cut(s)	71, 1143
BseDI	CCNNGG	6 cut(s)	38, 98, 695, 711, 804, 1191
BseGI	GGATG	2 cut(s)	602, 636
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	946, 1023, 1099
BseMI	GCAATG	1 cut(s)	1173
BseNI	ACTGG	3 cut(s)	378, 760, 797
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	319, 916, 1305, 1324
BseYI	CCCAGC	1 cut(s)	606
BsgI	GTGCAG	4 cut(s)	312, 318, 449, 915
BshFI	GGCC	3 cut(s)	623, 759, 902
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	1221
BsiHKCI	CYCGRG	1 cut(s)	695
BsiSI	CCGG	3 cut(s)	38, 98, 696
BslFI	GGGAC	3 cut(s)	115, 712, 1115
BslI	CCNNNNNNNGG	3 cut(s)	946, 1023, 1099
BsmAI	GTCTC	3 cut(s)	172, 908, 1001
BsmFI	GGGAC	3 cut(s)	115, 712, 1115
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	3 cut(s)	623, 759, 902
BsoBI	CYCGRG	1 cut(s)	695
Bsp119I	TTCGAA	1 cut(s)	518
Bsp1286I	GDGCHC	3 cut(s)	45, 1017, 1221
Bsp143I	GATC	3 cut(s)	61, 262, 658
Bsp1720I	GCTNAGC	1 cut(s)	5
Bsp19I	CCATGG	1 cut(s)	1191
BspACI	CCGC	4 cut(s)	46, 940, 1027, 1315
BspANI	GGCC	3 cut(s)	623, 759, 902
BspHI	TCATGA	1 cut(s)	1042
BspLI	GGNNCC	4 cut(s)	44, 264, 417, 951
BspPI	GGATC	2 cut(s)	257, 270
BspT104I	TTCGAA	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	1173
BsrI	ACTGG	3 cut(s)	378, 760, 797
BssECI	CCNNGG	6 cut(s)	38, 98, 695, 711, 804, 1191
BssMI	GATC	3 cut(s)	61, 262, 658
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	3 cut(s)	711, 804, 1191
Bst2UI	CCWGG	2 cut(s)	71, 1143
Bst4CI	ACNGT	8 cut(s)	339, 493, 566, 719, 780, 997, 1087, 1129
Bst6I	CTCTTC	2 cut(s)	69, 666
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	532
BstAPI	GCANNNNNTGC	1 cut(s)	1318
BstBAI	YACGTR	1 cut(s)	313
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	4 cut(s)	636, 1081, 1148, 1217
BstDEI	CTNAG	3 cut(s)	5, 114, 910
BstDSI	CCRYGG	1 cut(s)	1191
BstF5I	GGATG	2 cut(s)	602, 636
BstKTI	GATC	3 cut(s)	64, 265, 661
BstMAI	GTCTC	3 cut(s)	172, 908, 1001
BstMBI	GATC	3 cut(s)	61, 262, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 1147, 1318
BstNI	CCWGG	2 cut(s)	71, 1143
BstSCI	CCNGG	6 cut(s)	37, 69, 97, 694, 695, 1141
BstSLI	GKGCMC	1 cut(s)	45
BstSNI	TACGTA	1 cut(s)	313
BstV1I	GCAGC	4 cut(s)	319, 916, 1305, 1324
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	623, 759, 902
BtgI	CCRYGG	1 cut(s)	1191
BtsCI	GGATG	2 cut(s)	602, 636
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	3 cut(s)	221, 790, 1092
Cac8I	GCNNGC	4 cut(s)	636, 1081, 1148, 1217
CaiI	CAGNNNCTG	3 cut(s)	332, 929, 1318
CciI	TCATGA	1 cut(s)	1042
Cfr13I	GGNCC	2 cut(s)	900, 1331
Cfr9I	CCCGGG	1 cut(s)	695
CseI	GACGC	2 cut(s)	43, 112
Csp6I	GTAC	2 cut(s)	270, 314
CviAII	CATG	5 cut(s)	360, 644, 1043, 1192, 1305
CviQI	GTAC	2 cut(s)	270, 314
DdeI	CTNAG	3 cut(s)	5, 114, 910
DpnI	GATC	3 cut(s)	63, 264, 660
DpnII	GATC	3 cut(s)	61, 262, 658
Eam1104I	CTCTTC	2 cut(s)	69, 666
EarI	CTCTTC	2 cut(s)	69, 666
EciI	GGCGGA	1 cut(s)	1042
Ecl136II	GAGCTC	1 cut(s)	1219
Eco105I	TACGTA	1 cut(s)	313
Eco130I	CCWWGG	3 cut(s)	711, 804, 1191
Eco24I	GRGCYC	2 cut(s)	1017, 1221
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	1 cut(s)	1331
Eco53kI	GAGCTC	1 cut(s)	1219
Eco57I	CTGAAG	2 cut(s)	264, 426
Eco88I	CYCGRG	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	1219
EcoRII	CCWGG	2 cut(s)	69, 1141
EcoRV	GATATC	1 cut(s)	799
EcoT14I	CCWWGG	3 cut(s)	711, 804, 1191
EcoT38I	GRGCYC	2 cut(s)	1017, 1221
ErhI	CCWWGG	3 cut(s)	711, 804, 1191
FaeI	CATG	5 cut(s)	363, 647, 1046, 1195, 1308
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	3 cut(s)	115, 712, 1115
FatI	CATG	5 cut(s)	359, 643, 1042, 1191, 1304
Fnu4HI	GCNGC	5 cut(s)	333, 930, 1313, 1316, 1319
FokI	GGATG	2 cut(s)	589, 643
FriOI	GRGCYC	2 cut(s)	1017, 1221
Fsp4HI	GCNGC	5 cut(s)	333, 930, 1313, 1316, 1319
FspBI	CTAG	6 cut(s)	288, 597, 668, 1023, 1290, 1345
GluI	GCNGC	5 cut(s)	333, 930, 1313, 1316, 1319
GsaI	CCCAGC	1 cut(s)	610
HaeIII	GGCC	3 cut(s)	623, 759, 902
HapII	CCGG	3 cut(s)	38, 98, 696
HgaI	GACGC	2 cut(s)	43, 112
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	5 cut(s)	363, 647, 1046, 1195, 1308
HinfI	GANTC	6 cut(s)	130, 140, 190, 401, 737, 859
HpaII	CCGG	3 cut(s)	38, 98, 696
HphI	GGTGA	2 cut(s)	196, 793
Hpy166II	GTNNAC	2 cut(s)	322, 1090
Hpy188I	TCNGA	5 cut(s)	406, 432, 451, 472, 1248
Hpy188III	TCNNGA	5 cut(s)	656, 668, 1043, 1115, 1184
Hpy8I	GTNNAC	2 cut(s)	322, 1090
HpyAV	CCTTC	2 cut(s)	429, 470
HpyCH4III	ACNGT	8 cut(s)	339, 493, 566, 719, 780, 997, 1087, 1129
HpyCH4IV	ACGT	3 cut(s)	312, 1104, 1200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 1147, 1318
HpyF3I	CTNAG	3 cut(s)	5, 114, 910
HpySE526I	ACGT	3 cut(s)	312, 1104, 1200
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	5 cut(s)	363, 647, 1046, 1195, 1308
Kzo9I	GATC	3 cut(s)	61, 262, 658
Lsp1109I	GCAGC	4 cut(s)	319, 916, 1305, 1324
LweI	GCATC	6 cut(s)	520, 621, 1064, 1108, 1120, 1177
MaeI	CTAG	6 cut(s)	288, 597, 668, 1023, 1290, 1345
MaeII	ACGT	3 cut(s)	312, 1104, 1200
MaeIII	GTNAC	4 cut(s)	487, 774, 997, 1123
MalI	GATC	3 cut(s)	63, 264, 660
MboI	GATC	3 cut(s)	61, 262, 658
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	3 cut(s)	45, 1017, 1221
MluCI	AATT	3 cut(s)	237, 424, 834
MmeI	TCCRAC	4 cut(s)	104, 701, 836, 951
MroXI	GAANNNNTTC	4 cut(s)	651, 741, 877, 1269
MseI	TTAA	5 cut(s)	231, 533, 680, 945, 1038
MslI	CAYNNNNRTG	2 cut(s)	629, 1116
MspA1I	CMGCKG	1 cut(s)	1315
MspCI	CTTAAG	1 cut(s)	532
MspI	CCGG	3 cut(s)	38, 98, 696
MspR9I	CCNGG	6 cut(s)	39, 71, 99, 696, 697, 1143
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	2 cut(s)	71, 1143
MwoI	GCNNNNNNNGC	3 cut(s)	103, 1147, 1318
NciI	CCSGG	4 cut(s)	39, 99, 696, 697
NcoI	CCATGG	1 cut(s)	1191
NdeII	GATC	3 cut(s)	61, 262, 658
NlaIII	CATG	5 cut(s)	363, 647, 1046, 1195, 1308
NlaIV	GGNNCC	4 cut(s)	44, 264, 417, 951
NmuCI	GTSAC	1 cut(s)	487
NspV	TTCGAA	1 cut(s)	518
PagI	TCATGA	1 cut(s)	1042
PctI	GAATGC	1 cut(s)	526
PdmI	GAANNNNTTC	4 cut(s)	651, 741, 877, 1269
PfeI	GAWTC	6 cut(s)	130, 140, 190, 401, 737, 859
PkrI	GCNGC	5 cut(s)	334, 931, 1314, 1317, 1320
Ppu21I	YACGTR	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	1221
Psp6I	CCWGG	2 cut(s)	69, 1141
PspFI	CCCAGC	1 cut(s)	606
PspGI	CCWGG	2 cut(s)	69, 1141
PspN4I	GGNNCC	4 cut(s)	44, 264, 417, 951
PspPI	GGNCC	2 cut(s)	900, 1331
PsrI	GAACNNNNNNTAC	2 cut(s)	982, 1014
PstNI	CAGNNNCTG	3 cut(s)	332, 929, 1318
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	2 cut(s)	271, 315
RsaNI	GTAC	2 cut(s)	270, 314
RseI	CAYNNNNRTG	2 cut(s)	629, 1116
SacI	GAGCTC	1 cut(s)	1221
SaqAI	TTAA	5 cut(s)	231, 533, 680, 945, 1038
SatI	GCNGC	5 cut(s)	333, 930, 1313, 1316, 1319
Sau3AI	GATC	3 cut(s)	61, 262, 658
Sau96I	GGNCC	2 cut(s)	900, 1331
ScrFI	CCNGG	6 cut(s)	39, 71, 99, 696, 697, 1143
SduI	GDGCHC	3 cut(s)	45, 1017, 1221
SfaNI	GCATC	6 cut(s)	520, 621, 1064, 1108, 1120, 1177
SfuI	TTCGAA	1 cut(s)	518
SinI	GGWCC	1 cut(s)	1331
SmaI	CCCGGG	1 cut(s)	697
SmiMI	CAYNNNNRTG	2 cut(s)	629, 1116
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
SnaBI	TACGTA	1 cut(s)	313
Sse9I	AATT	3 cut(s)	237, 424, 834
SsiI	CCGC	4 cut(s)	46, 940, 1027, 1315
SspI	AATATT	2 cut(s)	54, 1269
SspMI	CTAG	6 cut(s)	288, 597, 668, 1023, 1290, 1345
SstI	GAGCTC	1 cut(s)	1221
StyD4I	CCNGG	6 cut(s)	37, 69, 97, 694, 695, 1141
StyI	CCWWGG	3 cut(s)	711, 804, 1191
TaaI	ACNGT	8 cut(s)	339, 493, 566, 719, 780, 997, 1087, 1129
TaiI	ACGT	3 cut(s)	315, 1107, 1203
TaqI	TCGA	1 cut(s)	518
TasI	AATT	3 cut(s)	237, 424, 834
TauI	GCSGC	1 cut(s)	1318
TfiI	GAWTC	6 cut(s)	130, 140, 190, 401, 737, 859
Tru1I	TTAA	5 cut(s)	231, 533, 680, 945, 1038
Tru9I	TTAA	5 cut(s)	231, 533, 680, 945, 1038
TscAI	CASTG	3 cut(s)	221, 797, 1092
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	4 cut(s)	332, 929, 1312, 1318
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	6 cut(s)	165, 200, 269, 558, 660, 906
TspMI	CCCGGG	1 cut(s)	695
TspRI	CASTG	3 cut(s)	221, 797, 1092
Vha464I	CTTAAG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	1331
XbaI	TCTAGA	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	2 cut(s)	27, 967
XmaI	CCCGGG	1 cut(s)	695
XmnI	GAANNNNTTC	4 cut(s)	651, 741, 877, 1269
XspI	CTAG	6 cut(s)	288, 597, 668, 1023, 1290, 1345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.