FvH4_7g23930
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
18559098 .. 18564111
5014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23930.t1

Sequence Viewer

Length: 1416 bp
ATGGTTGGCTCATCAACCCAGAAAGCTACTTGGTCGCCTGCGCACCGCAAAATATTCTTTGATCTTTGTCTAGATGAGGTTTCGAAAGGGAATAGACCGGGGACACATTTTAATAAGGAGGGTTGGATGAATATCGTGGAAAAGTTTTATGAGAAGACTGGTGTGAGGTATACTAAGAAACAGTTGAAGAATCACTGGGATTTTACAAAGAAGCAGTGGAAAGTGTGGATTAAGGTGGTTGCTGAAAGTAATATGAAATGGGATCCGAGTACCAACAAGTTTGGTGCGAGTGCGAATGATTGGGCTAATTATGTACAGGTTTACCCTGAAGCAGCACAGTTTCAGTACAAAGAACTCCCCTTCCCTGACAAATTGGAGCTCATTTTTGCCGGAGTTATAGATGCTGAAGGTATGGAGATCTCTTATTCTCGTAAGAAGCAGAATGATAACTCAGACAGTTCCTTTATGCAATCGGAAGAACAAGATTTCGCTAATGTGGAGGGGGAGGATGAGCATCTTTTTGGCACCGAGGATGAACATCTCTTTGCCGTTGAGGATGAGCATGGTTTTCATGCCATTCCACCTGTACGGAGTGCTGAAATGGTTCAGTCTGATTTAAGAAACCATAGAGCAATTGCTAGTGAACCTAGTTTATCTAGCTCATCCCAGACAAAGGCAAAGGCCATTTGGACACCAGCATTCCATAGAGCATTTCTGGATCTATGTGTAGAAGAGACATTAAAGGGTAACAAGCCTAGGACACATTTCACCAGGGATGCTTGGAAGACTATTATCGATTCTTTTCAACAAAGAACAGGCCTTGGTTATAATAGGTTACAGTTGAAGAATCATTGGGATATCACCAAGGAACAATGGAGAGTCTGGTCTAAGCTTATTGGAACAAGTACCATGGGATGGGATCCAAAGACGAAAAAATTTGGTGCAACTGAAGAAGTTTGGGCCAACTACTTGGAGACAAACCCGGAAGCTGCACCTTTTAGATACAAAGAACTTCAGTTCACTGACAAACTGGAAATCATATTTGATGGAACAACAGTTACTGGCGAGACAGAAGTCACAGAACCTCCAACTAAGCGGAGCAAGAATAATGAGAATTCAAGTGCATCTGTTTTGAACATAGACGAACGTAGCATGGGGAACCAAGCTGGGAACATTGAACATTTTGATGCTGTACCAATTTCCTTTAGACAAGCCAAGCTCACTTATAGCATTGGAGAGTGCATCGACTGTCTTGATGCCATGGAGGAAGTTGTACAAGGAAGTGATCTCTATCTGTTTGCACTAGATGTATTCCTGAAAAAGGAATACAGGGAAATATTTCTTCAACTGAAAAAGCCTAATGTAAGGATTGCATGGTTGCAGCGGCTGCAATCAGTTGGTTCGCCTTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

54.23

Weight (kDa)

5.83

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 10 - 104 1.3e-29 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 230 - 323 4.4e-29 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
Acc16I TGCGCA 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 524
AccB7I CCANNNNNTGG 1 cut(s) 915
AccI GTMKAC 1 cut(s) 170
AciI CCGC 3 cut(s) 46, 1096, 1384
AclWI GGATC 5 cut(s) 257, 270, 726, 914, 927
AcsI RAATTY 2 cut(s) 935, 1114
AcuI CTGAAG 4 cut(s) 348, 426, 969, 998
AfaI GTAC 7 cut(s) 271, 315, 347, 588, 907, 1194, 1275
AfiI CCNNNNNNNGG 3 cut(s) 673, 915, 1321
AgsI TTSAA 7 cut(s) 187, 806, 844, 1119, 1135, 1178, 1346
AjnI CCWGG 1 cut(s) 770
AloI GAACNNNNNNTCC 2 cut(s) 345, 377
AluBI AGCT 7 cut(s) 26, 379, 660, 892, 989, 1166, 1219
AluI AGCT 7 cut(s) 26, 379, 660, 892, 989, 1166, 1219
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 3 cut(s) 728, 968, 1061
AlwI GGATC 5 cut(s) 257, 270, 726, 914, 927
AlwNI CAGNNNCTG 2 cut(s) 1061, 1387
AoxI GGCC 3 cut(s) 681, 817, 960
ApeKI GCWGC 4 cut(s) 332, 989, 1381, 1387
ApoI RAATTY 2 cut(s) 935, 1114
Asp700I GAANNNNTTC 2 cut(s) 603, 1338
AspA2I CCTAGG 1 cut(s) 755
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 960
AsuC2I CCSGG 2 cut(s) 99, 983
AsuHPI GGTGA 2 cut(s) 760, 853
AsuII TTCGAA 1 cut(s) 83
AvrII CCTAGG 1 cut(s) 755
BamHI GGATCC 2 cut(s) 262, 919
BanI GGYRCC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 381
BbsI GAAGAC 2 cut(s) 161, 791
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 4 cut(s) 344, 976, 1374, 1393
BccI CCATC 2 cut(s) 909, 1040
BceAI ACGGC 1 cut(s) 533
BciT130I CCWGG 1 cut(s) 772
BcnI CCSGG 2 cut(s) 99, 983
BcoDI GTCTC 3 cut(s) 728, 968, 1061
BfaI CTAG 6 cut(s) 71, 639, 648, 657, 756, 1304
BglII AGATCT 1 cut(s) 417
BisI GCNGC 5 cut(s) 333, 990, 1382, 1385, 1388
BlnI CCTAGG 1 cut(s) 755
BlsI GCNGC 5 cut(s) 334, 991, 1383, 1386, 1389
Bme1390I CCNGG 3 cut(s) 99, 772, 983
BmgT120I GGNCC 1 cut(s) 960
BmiI GGNNCC 4 cut(s) 264, 526, 921, 1160
BmrFI CCNGG 3 cut(s) 99, 772, 983
BmrI ACTGGG 1 cut(s) 205
BmsI GCATC 7 cut(s) 391, 523, 766, 1133, 1177, 1246, 1251
BmuI ACTGGG 1 cut(s) 205
BoxI GACNNNNGTC 1 cut(s) 1073
BpiI GAAGAC 2 cut(s) 161, 791
Bpu14I TTCGAA 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 99, 983
Bsa29I ATCGAT 1 cut(s) 795
BsaBI GATNNNNATC 4 cut(s) 131, 513, 537, 1290
BsaJI CCNNGG 8 cut(s) 98, 528, 755, 771, 820, 864, 909, 1260
BsaXI ACNNNNNCTCC 2 cut(s) 1069, 1099
Bsc4I CCNNNNNNNGG 3 cut(s) 673, 915, 1321
Bse1I ACTGG 4 cut(s) 163, 200, 1035, 1066
Bse8I GATNNNNATC 4 cut(s) 131, 513, 537, 1290
BseBI CCWGG 1 cut(s) 772
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 8 cut(s) 98, 528, 755, 771, 820, 864, 909, 1260
BseGI GGATG 7 cut(s) 132, 514, 538, 562, 662, 781, 920
BseJI GATNNNNATC 4 cut(s) 131, 513, 537, 1290
BseLI CCNNNNNNNGG 3 cut(s) 673, 915, 1321
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 4 cut(s) 163, 200, 1035, 1066
BseXI GCAGC 4 cut(s) 344, 976, 1374, 1393
BseYI CCCAGC 1 cut(s) 1166
BsgI GTGCAG 1 cut(s) 975
BshFI GGCC 3 cut(s) 683, 819, 962
BshNI GGYRCC 1 cut(s) 524
BshVI ATCGAT 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 3 cut(s) 98, 390, 983
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 3 cut(s) 673, 915, 1321
BsmAI GTCTC 3 cut(s) 728, 968, 1061
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 698
BsnI GGCC 3 cut(s) 683, 819, 962
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 381
Bsp1407I TGTACA 2 cut(s) 313, 1273
Bsp143I GATC 6 cut(s) 61, 262, 417, 718, 919, 1285
Bsp19I CCATGG 2 cut(s) 909, 1260
BspACI CCGC 3 cut(s) 46, 1096, 1384
BspANI GGCC 3 cut(s) 683, 819, 962
BspCNI CTCAG 1 cut(s) 464
BspDI ATCGAT 1 cut(s) 795
BspLI GGNNCC 4 cut(s) 264, 526, 921, 1160
BspPI GGATC 5 cut(s) 257, 270, 726, 914, 927
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 524
BsrGI TGTACA 2 cut(s) 313, 1273
BsrI ACTGG 4 cut(s) 163, 200, 1035, 1066
BssECI CCNNGG 8 cut(s) 98, 528, 755, 771, 820, 864, 909, 1260
BssMI GATC 6 cut(s) 61, 262, 417, 718, 919, 1285
BssNAI GTATAC 1 cut(s) 171
BssT1I CCWWGG 5 cut(s) 755, 820, 864, 909, 1260
Bst1107I GTATAC 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 772
Bst4CI ACNGT 6 cut(s) 183, 339, 458, 840, 1057, 1250
Bst6I CTCTTC 1 cut(s) 726
BstAPI GCANNNNNTGC 1 cut(s) 1387
BstAUI TGTACA 2 cut(s) 313, 1273
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 4 cut(s) 174, 451, 888, 1092
BstDSI CCRYGG 2 cut(s) 909, 1260
BstENI CCTNNNNNAGG 1 cut(s) 1319
BstF5I GGATG 7 cut(s) 132, 514, 538, 562, 662, 781, 920
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 6 cut(s) 64, 265, 420, 721, 922, 1288
BstMAI GTCTC 3 cut(s) 728, 968, 1061
BstMBI GATC 6 cut(s) 61, 262, 417, 718, 919, 1285
BstMWI GCNNNNNNNGC 1 cut(s) 1387
BstNI CCWGG 1 cut(s) 772
BstPAI GACNNNNGTC 1 cut(s) 1073
BstSCI CCNGG 3 cut(s) 97, 770, 981
BstV1I GCAGC 4 cut(s) 344, 976, 1374, 1393
BstV2I GAAGAC 2 cut(s) 161, 791
BstX2I RGATCY 4 cut(s) 262, 417, 718, 919
BstXI CCANNNNNNTGG 1 cut(s) 970
BstYI RGATCY 4 cut(s) 262, 417, 718, 919
BstZ17I GTATAC 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 795
BsuRI GGCC 3 cut(s) 683, 819, 962
BsuTUI ATCGAT 1 cut(s) 795
BtgI CCRYGG 2 cut(s) 909, 1260
BtsCI GGATG 7 cut(s) 132, 514, 538, 562, 662, 781, 920
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 3 cut(s) 193, 221, 1020
Cac8I GCNNGC 1 cut(s) 39
CaiI CAGNNNCTG 2 cut(s) 1061, 1387
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 960
ClaI ATCGAT 1 cut(s) 795
Csp6I GTAC 7 cut(s) 270, 314, 346, 587, 906, 1193, 1274
CviAII CATG 6 cut(s) 563, 572, 910, 1153, 1261, 1374
CviQI GTAC 7 cut(s) 270, 314, 346, 587, 906, 1193, 1274
DdeI CTNAG 4 cut(s) 174, 451, 888, 1092
DpnI GATC 6 cut(s) 63, 264, 419, 720, 921, 1287
DpnII GATC 6 cut(s) 61, 262, 417, 718, 919, 1285
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 5 cut(s) 755, 820, 864, 909, 1260
Eco147I AGGCCT 1 cut(s) 819
Eco24I GRGCYC 1 cut(s) 381
Eco32I GATATC 1 cut(s) 859
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 4 cut(s) 348, 426, 969, 998
EcoICRI GAGCTC 1 cut(s) 379
EcoNI CCTNNNNNAGG 1 cut(s) 1319
EcoRI GAATTC 1 cut(s) 1114
EcoRII CCWGG 1 cut(s) 770
EcoRV GATATC 1 cut(s) 859
EcoT14I CCWWGG 5 cut(s) 755, 820, 864, 909, 1260
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 5 cut(s) 755, 820, 864, 909, 1260
FaeI CATG 6 cut(s) 566, 575, 913, 1156, 1264, 1377
FaqI GGGAC 1 cut(s) 115
FatI CATG 6 cut(s) 562, 571, 909, 1152, 1260, 1373
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 5 cut(s) 333, 990, 1382, 1385, 1388
FokI GGATG 7 cut(s) 139, 521, 545, 569, 649, 788, 927
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 5 cut(s) 333, 990, 1382, 1385, 1388
FspBI CTAG 6 cut(s) 71, 639, 648, 657, 756, 1304
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 1 cut(s) 42
GluI GCNGC 5 cut(s) 333, 990, 1382, 1385, 1388
GsaI CCCAGC 1 cut(s) 1170
HaeIII GGCC 3 cut(s) 683, 819, 962
HapII CCGG 3 cut(s) 98, 390, 983
HhaI GCGC 1 cut(s) 43
Hin1II CATG 6 cut(s) 566, 575, 913, 1156, 1264, 1377
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 890
HinfI GANTC 4 cut(s) 190, 797, 847, 879
HpaII CCGG 3 cut(s) 98, 390, 983
HphI GGTGA 2 cut(s) 760, 853
Hpy166II GTNNAC 4 cut(s) 171, 322, 644, 1020
Hpy188I TCNGA 4 cut(s) 267, 454, 475, 613
Hpy188III TCNNGA 4 cut(s) 71, 716, 1253, 1315
Hpy8I GTNNAC 4 cut(s) 171, 322, 644, 1020
HpyAV CCTTC 2 cut(s) 370, 401
HpyCH4III ACNGT 6 cut(s) 183, 339, 458, 840, 1057, 1250
HpyCH4IV ACGT 1 cut(s) 1147
HpyCH4V TGCA 9 cut(s) 469, 944, 992, 1124, 1242, 1301, 1373, 1381, 1390
HpyF10VI GCNNNNNNNGC 1 cut(s) 1387
HpyF3I CTNAG 4 cut(s) 174, 451, 888, 1092
HpySE526I ACGT 1 cut(s) 1147
Hsp92II CATG 6 cut(s) 566, 575, 913, 1156, 1264, 1377
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 6 cut(s) 61, 262, 417, 718, 919, 1285
LmnI GCTCC 2 cut(s) 376, 1098
Lsp1109I GCAGC 4 cut(s) 344, 976, 1374, 1393
LweI GCATC 7 cut(s) 391, 523, 766, 1133, 1177, 1246, 1251
MaeI CTAG 6 cut(s) 71, 639, 648, 657, 756, 1304
MaeII ACGT 1 cut(s) 1147
MaeIII GTNAC 4 cut(s) 746, 834, 1057, 1075
MalI GATC 6 cut(s) 63, 264, 419, 720, 921, 1287
MboI GATC 6 cut(s) 61, 262, 417, 718, 919, 1285
MboII GAAGA 8 cut(s) 166, 199, 488, 743, 796, 856, 962, 1334
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 4 cut(s) 262, 417, 718, 919
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 6 cut(s) 307, 371, 633, 935, 1114, 1197
MlyI GAGTC 1 cut(s) 888
MmeI TCCRAC 2 cut(s) 104, 1112
MnlI CCTC 9 cut(s) 70, 112, 159, 493, 499, 523, 547, 1095, 1258
MroXI GAANNNNTTC 2 cut(s) 603, 1338
MseI TTAA 4 cut(s) 111, 231, 617, 740
MslI CAYNNNNRTG 1 cut(s) 1185
MspA1I CMGCKG 1 cut(s) 1384
MspI CCGG 3 cut(s) 98, 390, 983
MspR9I CCNGG 3 cut(s) 99, 772, 983
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 698
MvaI CCWGG 1 cut(s) 772
MwoI GCNNNNNNNGC 1 cut(s) 1387
NciI CCSGG 2 cut(s) 99, 983
NcoI CCATGG 2 cut(s) 909, 1260
NdeII GATC 6 cut(s) 61, 262, 417, 718, 919, 1285
NlaIII CATG 6 cut(s) 566, 575, 913, 1156, 1264, 1377
NlaIV GGNNCC 4 cut(s) 264, 526, 921, 1160
NmuCI GTSAC 1 cut(s) 1075
NsbI TGCGCA 1 cut(s) 42
NspV TTCGAA 1 cut(s) 83
PceI AGGCCT 1 cut(s) 819
PctI GAATGC 1 cut(s) 698
PdmI GAANNNNTTC 2 cut(s) 603, 1338
PfeI GAWTC 3 cut(s) 190, 797, 847
PflMI CCANNNNNTGG 1 cut(s) 915
PkrI GCNGC 5 cut(s) 334, 991, 1383, 1386, 1389
PleI GAGTC 1 cut(s) 887
PpsI GAGTC 1 cut(s) 887
PshAI GACNNNNGTC 1 cut(s) 1073
PsiI TTATAA 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 770
PspFI CCCAGC 1 cut(s) 1166
PspGI CCWGG 1 cut(s) 770
PspN4I GGNNCC 4 cut(s) 264, 526, 921, 1160
PspPI GGNCC 1 cut(s) 960
PsrI GAACNNNNNNTAC 2 cut(s) 1042, 1074
PstNI CAGNNNCTG 2 cut(s) 1061, 1387
PsuI RGATCY 4 cut(s) 262, 417, 718, 919
RsaI GTAC 7 cut(s) 271, 315, 347, 588, 907, 1194, 1275
RsaNI GTAC 7 cut(s) 270, 314, 346, 587, 906, 1193, 1274
RseI CAYNNNNRTG 1 cut(s) 1185
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 4 cut(s) 111, 231, 617, 740
SatI GCNGC 5 cut(s) 333, 990, 1382, 1385, 1388
Sau3AI GATC 6 cut(s) 61, 262, 417, 718, 919, 1285
Sau96I GGNCC 1 cut(s) 960
SchI GAGTC 1 cut(s) 888
ScrFI CCNGG 3 cut(s) 99, 772, 983
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 7 cut(s) 391, 523, 766, 1133, 1177, 1246, 1251
SfuI TTCGAA 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 1185
Sse9I AATT 6 cut(s) 307, 371, 633, 935, 1114, 1197
SseBI AGGCCT 1 cut(s) 819
SsiI CCGC 3 cut(s) 46, 1096, 1384
SspI AATATT 2 cut(s) 54, 1338
SspMI CTAG 6 cut(s) 71, 639, 648, 657, 756, 1304
SstI GAGCTC 1 cut(s) 381
StuI AGGCCT 1 cut(s) 819
StyD4I CCNGG 3 cut(s) 97, 770, 981
StyI CCWWGG 5 cut(s) 755, 820, 864, 909, 1260
TaaI ACNGT 6 cut(s) 183, 339, 458, 840, 1057, 1250
TaiI ACGT 1 cut(s) 1150
TaqI TCGA 3 cut(s) 83, 795, 1245
TasI AATT 6 cut(s) 307, 371, 633, 935, 1114, 1197
TatI WGTACW 3 cut(s) 313, 345, 1273
TauI GCSGC 1 cut(s) 1387
TfiI GAWTC 3 cut(s) 190, 797, 847
Tru1I TTAA 4 cut(s) 111, 231, 617, 740
Tru9I TTAA 4 cut(s) 111, 231, 617, 740
TscAI CASTG 3 cut(s) 200, 221, 1027
TseFI GTSAC 1 cut(s) 1075
TseI GCWGC 4 cut(s) 332, 989, 1381, 1387
Tsp45I GTSAC 1 cut(s) 1075
TspDTI ATGAA 4 cut(s) 143, 269, 549, 560
TspGWI ACGGA 1 cut(s) 604
TspRI CASTG 3 cut(s) 200, 221, 1027
Van91I CCANNNNNTGG 1 cut(s) 915
XagI CCTNNNNNAGG 1 cut(s) 1319
XapI RAATTY 2 cut(s) 935, 1114
XbaI TCTAGA 1 cut(s) 70
XmaJI CCTAGG 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 170
XmnI GAANNNNTTC 2 cut(s) 603, 1338
XspI CTAG 6 cut(s) 71, 639, 648, 657, 756, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.