Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372517.1

Orthogroup ID

OG0006444

Physical Location & Seq

Genomic Coordinates Reverse (-)

88 .. 986

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372517.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgaagaatcactgggatttcactaagaagcagtggaaattgtggattaagctagttgctgaaagtaatatgaaatgggatccgagtacaaacaagtttggtgctagtgcgaaagattgggctaactatatacaggtttacccagaagccgcgcagtttcagtataaagaactcccgttccctgacaaattggagatcatttttgctggagttatagattctgaagggatggagatctcctattctcgtaagaggcagaatgatagctcggacagttcctttatgcagtcggaagaacaagagttggcgaatatggagggggaggatgagcatctttttgacactgaggatgaacatctttttgctgctgaggatgagcatggttttcatgccattccaataaagagtggtgaaaaggttcagtctcatttaagaagccgtagagcaattgctagtgaaccgagtttatctagctcatcccagacaaaggcaaaggctgtctggacgcctgcatatcacagagcatttctggatctatgtgtagaagagacattaaagggtaataagcctaggacacatttcaccagggatgcttggaggactattctcgagtcctttcaacaaagaacaggccttggttataataggttacagttgaagaatcattgggatatcacaaaggaacaatggagagtctggtctaagctgattggaacaagtagcatgggatgggatccaaacacgaaaaaatttggtgcaactgaagaagtttgggccaactacttagaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

264

Amino Acids

30.77

Weight (kDa)

5.89

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19220 AT3G11290 AT3G11290 AT3G11310 AT5G05800 AT5G05800 AT5G05800 AT5G05800 AT5G05800
fragaria_vesca	FvH4_7g23930 FvH4_7g23930
malus_domestica	MD01G1146000.v1.1
prunus_persica	Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1
pyrus_communis	pycom01g16540
rosa_chinensis	RchiOBHm_Chr1g0369261
rosa_multiflora	Rmu_co8372517.1_g000001 Rmu_sc0001482.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287810
rosa_rugosa	Rorug01G0349400
rosa_samantha	Rh1AG356300 Rh1BG320000 Rh1CG333900 Rh1DG350600
rosa_wichuraiana	Rw1G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AccII	CGCG	1 cut(s)	152
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	5 cut(s)	74, 87, 540, 728, 741
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	2 cut(s)	243, 783
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	2 cut(s)	620, 658
AjnI	CCWGG	1 cut(s)	584
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AluBI	AGCT	4 cut(s)	52, 267, 474, 706
AluI	AGCT	4 cut(s)	52, 267, 474, 706
Alw26I	GTCTC	2 cut(s)	429, 542
AlwI	GGATC	5 cut(s)	74, 87, 540, 728, 741
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	2 cut(s)	631, 774
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	749
Asp700I	GAANNNNTTC	1 cut(s)	417
AspA2I	CCTAGG	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	774
AsuHPI	GGTGA	2 cut(s)	422, 574
AvaI	CYCGRG	1 cut(s)	608
AvrII	CCTAGG	1 cut(s)	569
BamHI	GGATCC	2 cut(s)	79, 733
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	2 cut(s)	223, 723
BceAI	ACGGC	1 cut(s)	423
BciT130I	CCWGG	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	429, 542
BfaI	CTAG	5 cut(s)	53, 105, 453, 471, 570
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	2 cut(s)	150, 366
BlnI	CCTAGG	1 cut(s)	569
BlsI	GCNGC	2 cut(s)	151, 367
Bme1390I	CCNGG	1 cut(s)	586
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	774
BmiI	GGNNCC	2 cut(s)	81, 735
BmrFI	CCNGG	1 cut(s)	586
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	2 cut(s)	340, 580
BmuI	ACTGGG	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	369
BsaBI	GATNNNNATC	3 cut(s)	233, 330, 354
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	569, 585, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	17
Bse8I	GATNNNNATC	3 cut(s)	233, 330, 354
BseBI	CCWGG	1 cut(s)	586
BseDI	CCNNGG	3 cut(s)	569, 585, 634
BseGI	GGATG	7 cut(s)	234, 331, 355, 379, 476, 595, 734
BseJI	GATNNNNATC	3 cut(s)	233, 330, 354
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	2 cut(s)	336, 360
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	633, 776
BsiHKCI	CYCGRG	1 cut(s)	608
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	2 cut(s)	429, 542
BsnI	GGCC	2 cut(s)	633, 776
BsoBI	CYCGRG	1 cut(s)	608
Bsp143I	GATC	5 cut(s)	79, 195, 234, 532, 733
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	633, 776
BspCNI	CTCAG	2 cut(s)	337, 361
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	81, 735
BspPI	GGATC	5 cut(s)	74, 87, 540, 728, 741
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	569, 585, 634
BssMI	GATC	5 cut(s)	79, 195, 234, 532, 733
BssNI	GRCGYC	1 cut(s)	506
BssT1I	CCWWGG	2 cut(s)	569, 634
Bst2UI	CCWGG	1 cut(s)	586
Bst4CI	ACNGT	2 cut(s)	275, 654
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	5 cut(s)	24, 345, 369, 702, 784
BstF5I	GGATG	7 cut(s)	234, 331, 355, 379, 476, 595, 734
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	5 cut(s)	82, 198, 237, 535, 736
BstMAI	GTCTC	2 cut(s)	429, 542
BstMBI	GATC	5 cut(s)	79, 195, 234, 532, 733
BstNI	CCWGG	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	584
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	4 cut(s)	79, 234, 532, 733
BstYI	RGATCY	4 cut(s)	79, 234, 532, 733
BsuRI	GGCC	2 cut(s)	633, 776
BtsCI	GGATG	7 cut(s)	234, 331, 355, 379, 476, 595, 734
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	3 cut(s)	10, 38, 342
Cac8I	GCNNGC	1 cut(s)	510
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	774
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	3 cut(s)	380, 389, 724
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	5 cut(s)	24, 345, 369, 702, 784
DpnI	GATC	5 cut(s)	81, 197, 236, 534, 735
DpnII	GATC	5 cut(s)	79, 195, 234, 532, 733
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	2 cut(s)	569, 634
Eco147I	AGGCCT	1 cut(s)	633
Eco32I	GATATC	1 cut(s)	673
Eco57I	CTGAAG	2 cut(s)	243, 783
Eco88I	CYCGRG	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	584
EcoRV	GATATC	1 cut(s)	673
EcoT14I	CCWWGG	2 cut(s)	569, 634
ErhI	CCWWGG	2 cut(s)	569, 634
FaeI	CATG	3 cut(s)	383, 392, 727
FatI	CATG	3 cut(s)	379, 388, 723
Fnu4HI	GCNGC	2 cut(s)	150, 366
FokI	GGATG	7 cut(s)	241, 338, 362, 386, 463, 602, 741
Fsp4HI	GCNGC	2 cut(s)	150, 366
FspBI	CTAG	5 cut(s)	53, 105, 453, 471, 570
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	150, 366
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	633, 776
HgaI	GACGC	1 cut(s)	514
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	3 cut(s)	383, 392, 727
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	5 cut(s)	7, 218, 611, 661, 693
HphI	GGTGA	2 cut(s)	422, 574
Hpy166II	GTNNAC	2 cut(s)	139, 458
Hpy188I	TCNGA	4 cut(s)	84, 223, 271, 292
Hpy188III	TCNNGA	3 cut(s)	502, 530, 608
Hpy8I	GTNNAC	2 cut(s)	139, 458
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	275, 654
HpyCH4V	TGCA	3 cut(s)	286, 512, 758
HpyF3I	CTNAG	5 cut(s)	24, 345, 369, 702, 784
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	3 cut(s)	383, 392, 727
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	5 cut(s)	79, 195, 234, 532, 733
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	340, 580
MaeI	CTAG	5 cut(s)	53, 105, 453, 471, 570
MaeIII	GTNAC	1 cut(s)	648
MalI	GATC	5 cut(s)	81, 197, 236, 534, 735
MboI	GATC	5 cut(s)	79, 195, 234, 532, 733
MboII	GAAGA	5 cut(s)	16, 305, 557, 670, 776
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	4 cut(s)	79, 234, 532, 733
MluCI	AATT	4 cut(s)	38, 188, 447, 749
MlyI	GAGTC	2 cut(s)	620, 702
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	7 cut(s)	246, 310, 316, 340, 364, 591, 781
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	3 cut(s)	48, 431, 554
MspR9I	CCNGG	1 cut(s)	586
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	586
MvnI	CGCG	1 cut(s)	152
NdeII	GATC	5 cut(s)	79, 195, 234, 532, 733
NlaIII	CATG	3 cut(s)	383, 392, 727
NlaIV	GGNNCC	2 cut(s)	81, 735
PaeR7I	CTCGAG	1 cut(s)	608
PceI	AGGCCT	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	7, 218, 661
PkrI	GCNGC	2 cut(s)	151, 367
PleI	GAGTC	2 cut(s)	619, 701
PpsI	GAGTC	2 cut(s)	619, 701
PsiI	TTATAA	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	584
PspN4I	GGNNCC	2 cut(s)	81, 735
PspPI	GGNCC	1 cut(s)	774
PsuI	RGATCY	4 cut(s)	79, 234, 532, 733
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	48, 431, 554
SatI	GCNGC	2 cut(s)	150, 366
Sau3AI	GATC	5 cut(s)	79, 195, 234, 532, 733
Sau96I	GGNCC	1 cut(s)	774
SchI	GAGTC	2 cut(s)	620, 702
ScrFI	CCNGG	1 cut(s)	586
SetI	ASST	8 cut(s)	54, 138, 269, 420, 476, 650, 708, 792
SfaNI	GCATC	2 cut(s)	340, 580
Sfr274I	CTCGAG	1 cut(s)	608
SlaI	CTCGAG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	4 cut(s)	38, 188, 447, 749
SseBI	AGGCCT	1 cut(s)	633
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	5 cut(s)	53, 105, 453, 471, 570
StuI	AGGCCT	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	584
StyI	CCWWGG	2 cut(s)	569, 634
TaaI	ACNGT	2 cut(s)	275, 654
TaqI	TCGA	1 cut(s)	609
TasI	AATT	4 cut(s)	38, 188, 447, 749
TatI	WGTACW	1 cut(s)	86
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	7, 218, 661
Tru1I	TTAA	3 cut(s)	48, 431, 554
Tru9I	TTAA	3 cut(s)	48, 431, 554
TscAI	CASTG	3 cut(s)	17, 38, 349
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	4 cut(s)	17, 86, 366, 377
TspRI	CASTG	3 cut(s)	17, 38, 349
XapI	RAATTY	1 cut(s)	749
XhoI	CTCGAG	1 cut(s)	608
XmaJI	CCTAGG	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	5 cut(s)	53, 105, 453, 471, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.