Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006444

Physical Location & Seq

Genomic Coordinates Forward (+)

25581113 .. 25583596

Gene Structure 2484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1146000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGTATAGCTCAACAAGATCAAAAGCTATCTGGACTCCGGGGCACCGGAAAGTATTCTTTGATCTTTGTCTAGAAGAGGTGGACAAAGGGAATAAGCCGGGTACACACTTTACTAAGGAGGGTTGGAGGAATCTCATCCAAGGGTTCTACGAGCAGACGGGTTTAAGGTACACCAAGAAGCAAATGAAGAATCATTGGGATTTCACCAAGAAGCAATGGAAAGTTTGGGTTAAGCTCATCGCCGAGAGTAGTATGAAGTGGGATCCTACGACCAATCAATTTGGTGCTAGTGCAGAAGAATGGGCTCACTACATACAGGTGAACCCCGAAGCTGCACAGTTTCAGCATAAGGAAATCCCGTGCCCTGACCTATTGGAAATCCTTTTTGTTGGCACTATGGATTCTGGGGACATGGAGCCTTGTGATTCTCAGAGGAAGCAAAGCAATAGCTCGGACAACTCCTTTCTGCACTCAGAAGAACAAGATTTGGTGACTGTGGAGCTGGGAGAGGAGCATATTTCAAACGCTGTTCCATTAAGGAGTTACGTGGCTCAGTCTGAACACCGTCTAACAACTGCAAGTGAGCAGAGCATATCTAGCTCATCCCATTCAAAGGCAAAGGCCGTTTGGTCGCCTGCATCCCACGGTGTATTTATTGATCTATGTCTAGAAGAGACATTGAAAGGGAACAAACCTGGGACACATTTTACCAGGGACGCTTGGAGGACTATTGTTGAATCATTTAACCAAAAAACTGGCCTTATGTATGATAGGTTGCAGTTGAAGAATCATTGGGATGTCACCAAGGAGCAATGGAGAATCTGGTGTAAGCTAATTGGCACAACTTGTATGGGTTGGAATCCGAACACCAGACGATTTGGAGCAAATGATGAAGATTGGGCCAATTACTTAGAGACCGACCCTGAAGCTGCTTCATTCCGCTTTAAGGAACCTCAATGCGCCGACAAACTGGAAATCATATATGATGGAACAATTGATACCGGAGAGACAGAGCCTCCTGCTAGGCGTAGGAAGTACAACGATAACTTGAGTACATCCGTTTTGCATATAGAAGAAGATGGAGGCATAGCGAATCAAGAGGAGAACAACGTTGGGCAACTGGATGCTGTAACATTTGCTTTTGCACAAGGCAAGCCCACTTATAGCATCGGGGAGTGCATCAACTGCCTTGATGCCATGGAGGAAGTAGAACAAGGAAGTGATCTCTATTTGTTTGCTTTAGATGTATTCCTGAAAAGGGAGTACAGAGAAATATTTCTTCAACTGAAAAGGCCTAGTGTAAGAATTGCTTGGTTGCAGCGGCTGCAATCCGTCAGCCCGCCTTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

451

Amino Acids

51.77

Weight (kDa)

5.49

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	11 - 104	5.6e-28	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3	PF12776	210 - 303	1.2e-30	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19220 AT3G11290 AT3G11290 AT3G11310 AT5G05800 AT5G05800 AT5G05800 AT5G05800 AT5G05800
fragaria_vesca	FvH4_7g23930 FvH4_7g23930
malus_domestica	MD01G1146000.v1.1
prunus_persica	Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1 Prupe.2G245300_v2.0.a1
pyrus_communis	pycom01g16540
rosa_chinensis	RchiOBHm_Chr1g0369261
rosa_multiflora	Rmu_co8372517.1_g000001 Rmu_sc0001482.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287810
rosa_rugosa	Rorug01G0349400
rosa_samantha	Rh1AG356300 Rh1BG320000 Rh1CG333900 Rh1DG350600
rosa_wichuraiana	Rw1G031450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	3 cut(s)	940, 1321, 1340
AclI	AACGTT	1 cut(s)	1110
AclWI	GGATC	2 cut(s)	257, 270
AcuI	CTGAAG	1 cut(s)	945
AfaI	GTAC	5 cut(s)	103, 170, 1037, 1054, 1265
AfiI	CCNNNNNNNGG	3 cut(s)	613, 946, 1258
AgsI	TTSAA	6 cut(s)	522, 612, 682, 737, 784, 1283
AjnI	CCWGG	2 cut(s)	694, 710
AluBI	AGCT	9 cut(s)	9, 26, 235, 332, 450, 502, 600, 832, 929
AluI	AGCT	9 cut(s)	9, 26, 235, 332, 450, 502, 600, 832, 929
Alw26I	GTCTC	3 cut(s)	668, 908, 1001
AlwI	GGATC	2 cut(s)	257, 270
AlwNI	CAGNNNCTG	1 cut(s)	1324
AoxI	GGCC	4 cut(s)	621, 757, 900, 1292
ApeKI	GCWGC	4 cut(s)	332, 929, 1318, 1324
Asp700I	GAANNNNTTC	2 cut(s)	53, 1275
AspLEI	GCGC	1 cut(s)	962
AspS9I	GGNCC	1 cut(s)	900
AsuC2I	CCSGG	2 cut(s)	39, 99
AsuHPI	GGTGA	4 cut(s)	196, 331, 502, 793
BaeGI	GKGCMC	2 cut(s)	45, 365
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	307
BbvI	GCAGC	4 cut(s)	319, 916, 1311, 1330
BccI	CCATC	2 cut(s)	980, 1073
BceAI	ACGGC	1 cut(s)	608
BciT130I	CCWGG	2 cut(s)	696, 712
BcnI	CCSGG	2 cut(s)	39, 99
BcoDI	GTCTC	3 cut(s)	668, 908, 1001
BfaI	CTAG	7 cut(s)	71, 288, 597, 668, 1023, 1296, 1351
BisI	GCNGC	5 cut(s)	333, 930, 1319, 1322, 1325
BlsI	GCNGC	5 cut(s)	334, 931, 1320, 1323, 1326
Bme1390I	CCNGG	4 cut(s)	39, 99, 696, 712
BmgT120I	GGNCC	1 cut(s)	900
BmiI	GGNNCC	4 cut(s)	44, 264, 417, 951
BmrFI	CCNGG	4 cut(s)	39, 99, 696, 712
BmsI	GCATC	5 cut(s)	647, 1114, 1176, 1183, 1188
BpuEI	CTTGAG	1 cut(s)	1069
BpuMI	CCSGG	2 cut(s)	39, 99
BsaAI	YACGTR	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	908
BsaJI	CCNNGG	7 cut(s)	38, 139, 643, 695, 711, 804, 1197
BsaWI	WCCGGW	2 cut(s)	45, 1001
BsaXI	ACNNNNNCTCC	2 cut(s)	1000, 1030
Bsc4I	CCNNNNNNNGG	3 cut(s)	613, 946, 1258
Bse1I	ACTGG	3 cut(s)	760, 975, 1125
Bse3DI	GCAATG	2 cut(s)	221, 818
BseBI	CCWGG	2 cut(s)	696, 712
BseDI	CCNNGG	7 cut(s)	38, 139, 643, 695, 711, 804, 1197
BseGI	GGATG	6 cut(s)	135, 602, 638, 802, 1055, 1129
BseLI	CCNNNNNNNGG	3 cut(s)	613, 946, 1258
BseMI	GCAATG	2 cut(s)	221, 818
BseMII	CTCAG	3 cut(s)	443, 486, 566
BseNI	ACTGG	3 cut(s)	760, 975, 1125
BseRI	GAGGAG	2 cut(s)	524, 1115
BseSI	GKGCMC	2 cut(s)	45, 365
BseXI	GCAGC	4 cut(s)	319, 916, 1311, 1330
BseYI	CCCAGC	1 cut(s)	502
BsgI	GTGCAG	3 cut(s)	312, 318, 452
BshFI	GGCC	4 cut(s)	623, 759, 902, 1294
BshNI	GGYRCC	1 cut(s)	42
BsiSI	CCGG	4 cut(s)	38, 46, 98, 1002
BslFI	GGGAC	3 cut(s)	422, 712, 728
BslI	CCNNNNNNNGG	3 cut(s)	613, 946, 1258
BsmAI	GTCTC	3 cut(s)	668, 908, 1001
BsmFI	GGGAC	3 cut(s)	422, 712, 728
BsnI	GGCC	4 cut(s)	623, 759, 902, 1294
Bso31I	GGTCTC	1 cut(s)	908
Bsp1286I	GDGCHC	3 cut(s)	45, 307, 365
Bsp143I	GATC	5 cut(s)	17, 61, 262, 658, 1222
Bsp19I	CCATGG	1 cut(s)	1197
BspACI	CCGC	3 cut(s)	940, 1321, 1340
BspANI	GGCC	4 cut(s)	623, 759, 902, 1294
BspCNI	CTCAG	3 cut(s)	442, 485, 565
BspLI	GGNNCC	4 cut(s)	44, 264, 417, 951
BspPI	GGATC	2 cut(s)	257, 270
BspT107I	GGYRCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	908
BsrDI	GCAATG	2 cut(s)	221, 818
BsrI	ACTGG	3 cut(s)	760, 975, 1125
BssECI	CCNNGG	7 cut(s)	38, 139, 643, 695, 711, 804, 1197
BssMI	GATC	5 cut(s)	17, 61, 262, 658, 1222
BssT1I	CCWWGG	3 cut(s)	139, 804, 1197
Bst2UI	CCWGG	2 cut(s)	696, 712
Bst4CI	ACNGT	4 cut(s)	339, 496, 566, 647
Bst6I	CTCTTC	2 cut(s)	69, 666
BstAPI	GCANNNNNTGC	2 cut(s)	1185, 1324
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	3 cut(s)	636, 1154, 1340
BstDEI	CTNAG	5 cut(s)	114, 429, 472, 552, 910
BstDSI	CCRYGG	2 cut(s)	643, 1197
BstF5I	GGATG	6 cut(s)	135, 602, 638, 802, 1055, 1129
BstHHI	GCGC	1 cut(s)	962
BstKTI	GATC	5 cut(s)	20, 64, 265, 661, 1225
BstMAI	GTCTC	3 cut(s)	668, 908, 1001
BstMBI	GATC	5 cut(s)	17, 61, 262, 658, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	597, 1185, 1324
BstNI	CCWGG	2 cut(s)	696, 712
BstSCI	CCNGG	4 cut(s)	37, 97, 694, 710
BstSLI	GKGCMC	2 cut(s)	45, 365
BstV1I	GCAGC	4 cut(s)	319, 916, 1311, 1330
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	4 cut(s)	623, 759, 902, 1294
BtgI	CCRYGG	2 cut(s)	643, 1197
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	6 cut(s)	135, 602, 638, 802, 1055, 1129
Cac8I	GCNNGC	3 cut(s)	636, 1154, 1340
CaiI	CAGNNNCTG	1 cut(s)	1324
CfoI	GCGC	1 cut(s)	962
Cfr13I	GGNCC	1 cut(s)	900
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	5 cut(s)	102, 169, 1036, 1053, 1264
CviAII	CATG	2 cut(s)	412, 1198
CviQI	GTAC	5 cut(s)	102, 169, 1036, 1053, 1264
DdeI	CTNAG	5 cut(s)	114, 429, 472, 552, 910
DpnI	GATC	5 cut(s)	19, 63, 264, 660, 1224
DpnII	GATC	5 cut(s)	17, 61, 262, 658, 1222
Eam1104I	CTCTTC	2 cut(s)	69, 666
EarI	CTCTTC	2 cut(s)	69, 666
Eco130I	CCWWGG	3 cut(s)	139, 804, 1197
Eco147I	AGGCCT	1 cut(s)	1294
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	908
Eco57I	CTGAAG	1 cut(s)	945
EcoRII	CCWGG	2 cut(s)	694, 710
EcoT14I	CCWWGG	3 cut(s)	139, 804, 1197
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	3 cut(s)	139, 804, 1197
FaeI	CATG	2 cut(s)	415, 1201
FalI	AAGNNNNNCTT	2 cut(s)	1294, 1326
FaqI	GGGAC	3 cut(s)	422, 712, 728
FatI	CATG	2 cut(s)	411, 1197
FauI	CCCGC	1 cut(s)	1347
Fnu4HI	GCNGC	5 cut(s)	333, 930, 1319, 1322, 1325
FokI	GGATG	6 cut(s)	122, 589, 625, 809, 1042, 1136
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	5 cut(s)	333, 930, 1319, 1322, 1325
FspBI	CTAG	7 cut(s)	71, 288, 597, 668, 1023, 1296, 1351
GlaI	GCGC	1 cut(s)	961
GluI	GCNGC	5 cut(s)	333, 930, 1319, 1322, 1325
GsaI	CCCAGC	1 cut(s)	506
HaeIII	GGCC	4 cut(s)	623, 759, 902, 1294
HapII	CCGG	4 cut(s)	38, 46, 98, 1002
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	1 cut(s)	962
Hin1II	CATG	2 cut(s)	415, 1201
Hin6I	GCGC	1 cut(s)	960
HinP1I	GCGC	1 cut(s)	960
HpaII	CCGG	4 cut(s)	38, 46, 98, 1002
HphI	GGTGA	4 cut(s)	196, 331, 502, 793
Hpy166II	GTNNAC	4 cut(s)	82, 104, 171, 322
Hpy188I	TCNGA	5 cut(s)	432, 454, 475, 559, 864
Hpy188III	TCNNGA	5 cut(s)	31, 71, 668, 1097, 1252
Hpy8I	GTNNAC	4 cut(s)	82, 104, 171, 322
HpyCH4III	ACNGT	4 cut(s)	339, 496, 566, 647
HpyCH4IV	ACGT	2 cut(s)	546, 1110
HpyF10VI	GCNNNNNNNGC	3 cut(s)	597, 1185, 1324
HpyF3I	CTNAG	5 cut(s)	114, 429, 472, 552, 910
HpySE526I	ACGT	2 cut(s)	546, 1110
Hsp92II	CATG	2 cut(s)	415, 1201
HspAI	GCGC	1 cut(s)	960
Kzo9I	GATC	5 cut(s)	17, 61, 262, 658, 1222
LmnI	GCTCC	5 cut(s)	415, 499, 511, 808, 881
Lsp1109I	GCAGC	4 cut(s)	319, 916, 1311, 1330
LweI	GCATC	5 cut(s)	647, 1114, 1176, 1183, 1188
MaeI	CTAG	7 cut(s)	71, 288, 597, 668, 1023, 1296, 1351
MaeII	ACGT	2 cut(s)	546, 1110
MaeIII	GTNAC	4 cut(s)	490, 542, 799, 1129
MalI	GATC	5 cut(s)	19, 63, 264, 660, 1224
MboI	GATC	5 cut(s)	17, 61, 262, 658, 1222
MfeI	CAATTG	1 cut(s)	993
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	3 cut(s)	45, 307, 365
MluCI	AATT	5 cut(s)	278, 834, 904, 993, 1305
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	2 cut(s)	104, 836
MroXI	GAANNNNTTC	2 cut(s)	53, 1275
MseI	TTAA	5 cut(s)	164, 231, 536, 744, 945
MslI	CAYNNNNRTG	2 cut(s)	317, 795
MspA1I	CMGCKG	1 cut(s)	1321
MspI	CCGG	4 cut(s)	38, 46, 98, 1002
MspR9I	CCNGG	4 cut(s)	39, 99, 696, 712
MunI	CAATTG	1 cut(s)	993
MvaI	CCWGG	2 cut(s)	696, 712
MwoI	GCNNNNNNNGC	3 cut(s)	597, 1185, 1324
NciI	CCSGG	2 cut(s)	39, 99
NcoI	CCATGG	1 cut(s)	1197
NdeII	GATC	5 cut(s)	17, 61, 262, 658, 1222
NlaIII	CATG	2 cut(s)	415, 1201
NlaIV	GGNNCC	4 cut(s)	44, 264, 417, 951
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	490, 799
PceI	AGGCCT	1 cut(s)	1294
PdmI	GAANNNNTTC	2 cut(s)	53, 1275
PfeI	GAWTC	9 cut(s)	130, 190, 401, 425, 737, 787, 819, 859, 1093
PkrI	GCNGC	5 cut(s)	334, 931, 1320, 1323, 1326
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	547
Psp1406I	AACGTT	1 cut(s)	1110
Psp6I	CCWGG	2 cut(s)	694, 710
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	2 cut(s)	694, 710
PspN4I	GGNNCC	4 cut(s)	44, 264, 417, 951
PspPI	GGNCC	1 cut(s)	900
PsrI	GAACNNNNNNTAC	2 cut(s)	982, 1014
PstNI	CAGNNNCTG	1 cut(s)	1324
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	5 cut(s)	103, 170, 1037, 1054, 1265
RsaNI	GTAC	5 cut(s)	102, 169, 1036, 1053, 1264
RseI	CAYNNNNRTG	2 cut(s)	317, 795
SaqAI	TTAA	5 cut(s)	164, 231, 536, 744, 945
SatI	GCNGC	5 cut(s)	333, 930, 1319, 1322, 1325
Sau3AI	GATC	5 cut(s)	17, 61, 262, 658, 1222
Sau96I	GGNCC	1 cut(s)	900
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	4 cut(s)	39, 99, 696, 712
SduI	GDGCHC	3 cut(s)	45, 307, 365
SfaNI	GCATC	5 cut(s)	647, 1114, 1176, 1183, 1188
SmiMI	CAYNNNNRTG	2 cut(s)	317, 795
SmlI	CTYRAG	1 cut(s)	1048
SmoI	CTYRAG	1 cut(s)	1048
Sse9I	AATT	5 cut(s)	278, 834, 904, 993, 1305
SseBI	AGGCCT	1 cut(s)	1294
SsiI	CCGC	3 cut(s)	940, 1321, 1340
SspI	AATATT	1 cut(s)	1275
SspMI	CTAG	7 cut(s)	71, 288, 597, 668, 1023, 1296, 1351
StuI	AGGCCT	1 cut(s)	1294
StyD4I	CCNGG	4 cut(s)	37, 97, 694, 710
StyI	CCWWGG	3 cut(s)	139, 804, 1197
TaaI	ACNGT	4 cut(s)	339, 496, 566, 647
TaiI	ACGT	2 cut(s)	549, 1113
TaqII	GACCGA	1 cut(s)	932
TasI	AATT	5 cut(s)	278, 834, 904, 993, 1305
TatI	WGTACW	3 cut(s)	1035, 1052, 1263
TauI	GCSGC	1 cut(s)	1324
TfiI	GAWTC	9 cut(s)	130, 190, 401, 425, 737, 787, 819, 859, 1093
Tru1I	TTAA	5 cut(s)	164, 231, 536, 744, 945
Tru9I	TTAA	5 cut(s)	164, 231, 536, 744, 945
TseFI	GTSAC	2 cut(s)	490, 799
TseI	GCWGC	4 cut(s)	332, 929, 1318, 1324
Tsp45I	GTSAC	2 cut(s)	490, 799
TspDTI	ATGAA	4 cut(s)	200, 269, 906, 924
TspGWI	ACGGA	2 cut(s)	1048, 1321
XbaI	TCTAGA	2 cut(s)	70, 667
XmnI	GAANNNNTTC	2 cut(s)	53, 1275
XspI	CTAG	7 cut(s)	71, 288, 597, 668, 1023, 1296, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.