AT3G11290
MYB Family

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
3535561 .. 3537904
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11290.2

Sequence Viewer

Length: 1383 bp
ATGATGCCGAAAGCTGCGTGGGAACCAGAATACCACAGAGTATTTGTGGACTTATGCGTCGAGCAAAAGATGTTAGGGAATCAACCTGGAACGCAGCATATATTGAAACCTTTTCTACAAAGAACTGGCGCTAGGTTCACCAGAAACCAGCTTAAGAATCACTGGGATACAATGATCAAGCAGTGGAAGATTTGGTGTAGACTTGTTCAATGCAGTGATATGCAATGGGATCCTCAGACTAACACTTTTGGTGCTAATGATCAAGACTGGGCCAACTATTTACATGTGAATCCTGAGGCTGGGCAGTATCGGTTGAATCCTCCATCGTTCCTCGAGAAACTTGAGCTTATCTTTGAAGATAGTAACTTAGATGATGAAGGTACTTCAGGTAGCAAAAGGAAGCGAATAGCCAAGCATCGTGATGAAGATAATGATAATACTGGAGATGAAGAAGACACGCAAAGCGCTTCTAATTTCTCGAGTCCTCAGTCGAAAGGATACTGGTCACCGTCTTCACATGAGCTGTTTGTTGATTTGTTGTTCCAAGAGGCTTTAAAAGGAAACAGACCTGACTCACATTATCCAAAGGAAACTTGGAAAATGATCCTTGAGACTATCAATCAGAATACCGGTAAAAGCTTCACCAGACCGCAACTCAAGAATCATTGGGATTGCACCAGGAAATCGTGGAAGATCTGGTGTCAAGTGATTGGTGCTCCTGTCATGAAATGGGATGCAACTTCTCGAACATTTGGTGCTACTGATGAAGACTGGAAAAACTACTTGAAGGAGAATCATAGAGCAGCACCATTCAGAAGGAAACAACTTCCTCACGCGGATAAACTAGCAACCATCTTCAAAGGACTTATAGAACCAGGAAAAGCCTATTTCCGTTCTTATCGCAGGAGAGTGCTTGATCATCATTCCGAATCACCACAGCTACATGACCCAACTCCATTATCAACACTTTACACAAACGAGCCAGTCTCAGGTAGTGAAGGTGGAGCTGATGAAGATGACAATGATGACGATGATGAGCAGCCTACTCCGCAGCACCGGAGATTTAACAGTGTTGGTTTTGCAGAGTCTCGGTTACAAGATGTTGAAATTGTAACTCCGGGATGCCACAGGTTAAAAACTGAGCTGATGAAGGAGAGTCCAGTGAGTGCATCGGTTAGGCAGTACGAGTATACCATTGGGGAATGCATTGAGTGTTTGGACTCCATGGAAGAGGTTGAGCAAGGTAGTGATCTTTACTTGTTTGCGTTGGATTTGTTTGTGAAGAAAGAGTACAGAGAGATTTTCTTGCTGTTGAAGAACTCAAGTTTGAGAATGTCTTGGCTGCTTAGACTTCGATCTGGTGGCCTTACCATTGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

53.4

Weight (kDa)

5.88

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 7 - 93 3.3e-27 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 167 - 261 3.9e-32 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccI GTMKAC 2 cut(s) 199, 1190
AccII CGCG 1 cut(s) 836
AciI CCGC 3 cut(s) 650, 836, 1049
AclWI GGATC 3 cut(s) 224, 237, 598
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 3 cut(s) 382, 1184, 1292
AfeI AGCGCT 1 cut(s) 466
AfiI CCNNNNNNNGG 2 cut(s) 299, 989
AflII CTTAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 283
AgeI ACCGGT 1 cut(s) 629
AgsI TTSAA 8 cut(s) 106, 209, 316, 356, 787, 859, 1106, 1315
AjnI CCWGG 3 cut(s) 85, 677, 874
AluBI AGCT 8 cut(s) 14, 151, 346, 523, 639, 940, 1007, 1144
AluI AGCT 8 cut(s) 14, 151, 346, 523, 639, 940, 1007, 1144
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 3 cut(s) 605, 991, 1092
AlwI GGATC 3 cut(s) 224, 237, 598
Ama87I CYCGRG 2 cut(s) 332, 478
Aor51HI AGCGCT 1 cut(s) 466
AoxI GGCC 2 cut(s) 270, 1363
ApeKI GCWGC 7 cut(s) 14, 94, 803, 1039, 1051, 1342, 1376
AsiGI ACCGGT 1 cut(s) 629
AspLEI GCGC 2 cut(s) 131, 467
AspS9I GGNCC 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 1119
AsuHPI GGTGA 4 cut(s) 130, 498, 634, 924
AvaI CYCGRG 2 cut(s) 332, 478
AxyI CCTNAGG 1 cut(s) 294
BamHI GGATCC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 1274, 1306
BbsI GAAGAC 3 cut(s) 459, 504, 774
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 6 cut(s) 106, 815, 1051, 1063, 1329, 1363
BccI CCATC 2 cut(s) 331, 860
BciT130I CCWGG 3 cut(s) 87, 679, 876
BciVI GTATCC 2 cut(s) 160, 491
BclI TGATCA 3 cut(s) 174, 259, 916
BcnI CCSGG 1 cut(s) 1119
BcoDI GTCTC 3 cut(s) 605, 991, 1092
BfaI CTAG 2 cut(s) 132, 845
BfoI RGCGCY 2 cut(s) 132, 468
BfrI CTTAAG 1 cut(s) 152
BfuI GTATCC 2 cut(s) 160, 491
BglII AGATCT 1 cut(s) 693
BisI GCNGC 7 cut(s) 15, 95, 804, 1040, 1052, 1343, 1377
BlsI GCNGC 7 cut(s) 16, 96, 805, 1041, 1053, 1344, 1378
Bme1390I CCNGG 4 cut(s) 87, 679, 876, 1119
BmeT110I CYCGRG 2 cut(s) 332, 478
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 24, 231
BmrFI CCNGG 4 cut(s) 87, 679, 876, 1119
BmrI ACTGGG 2 cut(s) 172, 277
BmsI GCATC 4 cut(s) 424, 724, 1112, 1178
BmuI ACTGGG 2 cut(s) 172, 277
BpiI GAAGAC 3 cut(s) 459, 504, 774
BplI GAGNNNNNCTC 2 cut(s) 971, 1003
BpmI CTGGAG 1 cut(s) 462
BpuEI CTTGAG 4 cut(s) 362, 629, 641, 1306
BpuMI CCSGG 1 cut(s) 1119
BsaJI CCNNGG 1 cut(s) 1224
BsaWI WCCGGW 2 cut(s) 629, 1056
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 989
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 8 cut(s) 130, 167, 272, 445, 506, 776, 983, 1160
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 2 cut(s) 230, 1371
BseBI CCWGG 3 cut(s) 87, 679, 876
BseDI CCNNGG 1 cut(s) 1224
BseGI GGATG 2 cut(s) 739, 1127
BseLI CCNNNNNNNGG 2 cut(s) 299, 989
BseMI GCAATG 2 cut(s) 230, 1371
BseMII CTCAG 5 cut(s) 248, 285, 500, 1002, 1131
BseNI ACTGG 8 cut(s) 130, 167, 272, 445, 506, 776, 983, 1160
BseXI GCAGC 6 cut(s) 106, 815, 1051, 1063, 1329, 1363
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 836
BshFI GGCC 2 cut(s) 272, 1365
BshTI ACCGGT 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 2 cut(s) 332, 478
BsiSI CCGG 3 cut(s) 630, 1057, 1118
BslI CCNNNNNNNGG 2 cut(s) 299, 989
BsmAI GTCTC 3 cut(s) 605, 991, 1092
BsmI GAATGC 1 cut(s) 1208
BsnI GGCC 2 cut(s) 272, 1365
BsoBI CYCGRG 2 cut(s) 332, 478
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 8 cut(s) 174, 229, 259, 603, 693, 916, 1249, 1355
Bsp19I CCATGG 1 cut(s) 1224
BspACI CCGC 3 cut(s) 650, 836, 1049
BspANI GGCC 2 cut(s) 272, 1365
BspCNI CTCAG 5 cut(s) 247, 286, 499, 1001, 1132
BspFNI CGCG 1 cut(s) 836
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 2 cut(s) 24, 231
BspPI GGATC 3 cut(s) 224, 237, 598
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 230, 1371
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 8 cut(s) 130, 167, 272, 445, 506, 776, 983, 1160
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 1 cut(s) 1224
BssMI GATC 8 cut(s) 174, 229, 259, 603, 693, 916, 1249, 1355
BssNAI GTATAC 1 cut(s) 1191
BssT1I CCWWGG 1 cut(s) 1224
Bst1107I GTATAC 1 cut(s) 1191
Bst2UI CCWGG 3 cut(s) 87, 679, 876
Bst4CI ACNGT 2 cut(s) 510, 1070
Bst6I CTCTTC 1 cut(s) 1224
BstAFI CTTAAG 1 cut(s) 152
BstDEI CTNAG 7 cut(s) 234, 294, 367, 486, 988, 1140, 1346
BstDSI CCRYGG 1 cut(s) 1224
BstEII GGTNACC 1 cut(s) 504
BstF5I GGATG 2 cut(s) 739, 1127
BstFNI CGCG 1 cut(s) 836
BstH2I RGCGCY 2 cut(s) 132, 468
BstHHI GCGC 2 cut(s) 131, 467
BstKTI GATC 8 cut(s) 177, 232, 262, 606, 696, 919, 1252, 1358
BstMAI GTCTC 3 cut(s) 605, 991, 1092
BstMBI GATC 8 cut(s) 174, 229, 259, 603, 693, 916, 1249, 1355
BstMWI GCNNNNNNNGC 1 cut(s) 1048
BstNI CCWGG 3 cut(s) 87, 679, 876
BstNSI RCATGY 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 504
BstSCI CCNGG 4 cut(s) 85, 677, 874, 1117
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 6 cut(s) 106, 815, 1051, 1063, 1329, 1363
BstV2I GAAGAC 3 cut(s) 459, 504, 774
BstX2I RGATCY 2 cut(s) 229, 693
BstYI RGATCY 2 cut(s) 229, 693
BstZ17I GTATAC 1 cut(s) 1191
Bsu36I CCTNAGG 1 cut(s) 294
BsuI GTATCC 2 cut(s) 160, 491
BsuRI GGCC 2 cut(s) 272, 1365
BtgI CCRYGG 1 cut(s) 1224
BtsCI GGATG 2 cut(s) 739, 1127
BtsI GCAGTG 2 cut(s) 188, 220
BtsIMutI CAGTG 5 cut(s) 160, 188, 220, 1075, 1167
CciI TCATGA 1 cut(s) 723
CfoI GCGC 2 cut(s) 131, 467
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 270
CseI GACGC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 381, 1183, 1291
CspAI ACCGGT 1 cut(s) 629
CviAII CATG 5 cut(s) 284, 518, 724, 944, 1225
CviQI GTAC 3 cut(s) 381, 1183, 1291
DdeI CTNAG 7 cut(s) 234, 294, 367, 486, 988, 1140, 1346
DpnI GATC 8 cut(s) 176, 231, 261, 605, 695, 918, 1251, 1357
DpnII GATC 8 cut(s) 174, 229, 259, 603, 693, 916, 1249, 1355
DraI TTTAAA 1 cut(s) 555
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 1224
EarI CTCTTC 1 cut(s) 1224
Eco130I CCWWGG 1 cut(s) 1224
Eco47III AGCGCT 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 294
Eco88I CYCGRG 2 cut(s) 332, 478
Eco91I GGTNACC 1 cut(s) 504
EcoO65I GGTNACC 1 cut(s) 504
EcoRII CCWGG 3 cut(s) 85, 677, 874
EcoT14I CCWWGG 1 cut(s) 1224
EcoT22I ATGCAT 1 cut(s) 1208
ErhI CCWWGG 1 cut(s) 1224
FaeI CATG 5 cut(s) 287, 521, 727, 947, 1228
FatI CATG 5 cut(s) 283, 517, 723, 943, 1224
FbaI TGATCA 3 cut(s) 174, 259, 916
FblI GTMKAC 2 cut(s) 199, 1190
Fnu4HI GCNGC 7 cut(s) 15, 95, 804, 1040, 1052, 1343, 1377
FokI GGATG 2 cut(s) 746, 1134
Fsp4HI GCNGC 7 cut(s) 15, 95, 804, 1040, 1052, 1343, 1377
FspBI CTAG 2 cut(s) 132, 845
GlaI GCGC 2 cut(s) 130, 466
GluI GCNGC 7 cut(s) 15, 95, 804, 1040, 1052, 1343, 1377
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 462
HaeII RGCGCY 2 cut(s) 132, 468
HaeIII GGCC 2 cut(s) 272, 1365
HapII CCGG 3 cut(s) 630, 1057, 1118
HgaI GACGC 1 cut(s) 46
HhaI GCGC 2 cut(s) 131, 467
Hin1II CATG 5 cut(s) 287, 521, 727, 947, 1228
Hin6I GCGC 2 cut(s) 129, 465
HinP1I GCGC 2 cut(s) 129, 465
HindIII AAGCTT 1 cut(s) 637
HpaII CCGG 3 cut(s) 630, 1057, 1118
HphI GGTGA 4 cut(s) 130, 498, 634, 924
Hpy166II GTNNAC 4 cut(s) 49, 138, 200, 1191
Hpy188I TCNGA 4 cut(s) 237, 624, 815, 928
Hpy188III TCNNGA 8 cut(s) 263, 293, 334, 419, 478, 658, 724, 744
Hpy8I GTNNAC 4 cut(s) 49, 138, 200, 1191
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 5 cut(s) 371, 781, 810, 992, 1144
HpyCH4III ACNGT 2 cut(s) 510, 1070
HpyCH4V TGCA 7 cut(s) 213, 223, 675, 737, 1082, 1169, 1206
HpyF10VI GCNNNNNNNGC 1 cut(s) 1048
HpyF3I CTNAG 7 cut(s) 234, 294, 367, 486, 988, 1140, 1346
Hsp92II CATG 5 cut(s) 287, 521, 727, 947, 1228
HspAI GCGC 2 cut(s) 129, 465
Ksp22I TGATCA 3 cut(s) 174, 259, 916
Kzo9I GATC 8 cut(s) 174, 229, 259, 603, 693, 916, 1249, 1355
LmnI GCTCC 2 cut(s) 721, 1004
Lsp1109I GCAGC 6 cut(s) 106, 815, 1051, 1063, 1329, 1363
LweI GCATC 4 cut(s) 424, 724, 1112, 1178
MaeI CTAG 2 cut(s) 132, 845
MaeIII GTNAC 4 cut(s) 362, 504, 1092, 1111
MalI GATC 8 cut(s) 176, 231, 261, 605, 695, 918, 1251, 1357
MboI GATC 8 cut(s) 174, 229, 259, 603, 693, 916, 1249, 1355
MflI RGATCY 2 cut(s) 229, 693
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 2 cut(s) 472, 1107
MlyI GAGTC 5 cut(s) 490, 566, 1094, 1165, 1214
MmeI TCCRAC 1 cut(s) 1248
MnlI CCTC 8 cut(s) 243, 289, 330, 341, 495, 541, 840, 1225
Mph1103I ATGCAT 1 cut(s) 1208
MseI TTAA 4 cut(s) 153, 554, 1065, 1133
MslI CAYNNNNRTG 1 cut(s) 420
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 3 cut(s) 630, 1057, 1118
MspR9I CCNGG 4 cut(s) 87, 679, 876, 1119
Mva1269I GAATGC 1 cut(s) 1208
MvaI CCWGG 3 cut(s) 87, 679, 876
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 1 cut(s) 1048
NciI CCSGG 1 cut(s) 1119
NcoI CCATGG 1 cut(s) 1224
NdeII GATC 8 cut(s) 174, 229, 259, 603, 693, 916, 1249, 1355
NlaIII CATG 5 cut(s) 287, 521, 727, 947, 1228
NlaIV GGNNCC 2 cut(s) 24, 231
NmuCI GTSAC 1 cut(s) 504
NsiI ATGCAT 1 cut(s) 1208
NspI RCATGY 1 cut(s) 287
PaeR7I CTCGAG 2 cut(s) 332, 478
PagI TCATGA 1 cut(s) 723
PciI ACATGT 1 cut(s) 283
PctI GAATGC 1 cut(s) 1208
PfeI GAWTC 7 cut(s) 79, 157, 289, 316, 661, 793, 929
PfoI TCCNGGA 1 cut(s) 1117
PinAI ACCGGT 1 cut(s) 629
PkrI GCNGC 7 cut(s) 16, 96, 805, 1041, 1053, 1344, 1378
PleI GAGTC 5 cut(s) 489, 566, 1093, 1164, 1214
PpsI GAGTC 5 cut(s) 489, 566, 1093, 1164, 1214
PscI ACATGT 1 cut(s) 283
Psp6I CCWGG 3 cut(s) 85, 677, 874
PspEI GGTNACC 1 cut(s) 504
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 3 cut(s) 85, 677, 874
PspN4I GGNNCC 2 cut(s) 24, 231
PspPI GGNCC 1 cut(s) 270
PsuI RGATCY 2 cut(s) 229, 693
RsaI GTAC 3 cut(s) 382, 1184, 1292
RsaNI GTAC 3 cut(s) 381, 1183, 1291
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 4 cut(s) 153, 554, 1065, 1133
SatI GCNGC 7 cut(s) 15, 95, 804, 1040, 1052, 1343, 1377
Sau3AI GATC 8 cut(s) 174, 229, 259, 603, 693, 916, 1249, 1355
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 5 cut(s) 490, 566, 1094, 1165, 1214
ScrFI CCNGG 4 cut(s) 87, 679, 876, 1119
SduI GDGCHC 1 cut(s) 718
SfaNI GCATC 4 cut(s) 424, 724, 1112, 1178
Sfr274I CTCGAG 2 cut(s) 332, 478
SlaI CTCGAG 2 cut(s) 332, 478
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 7 cut(s) 152, 332, 341, 478, 608, 656, 1321
SmoI CTYRAG 7 cut(s) 152, 332, 341, 478, 608, 656, 1321
Sse9I AATT 2 cut(s) 472, 1107
SsiI CCGC 3 cut(s) 650, 836, 1049
SspMI CTAG 2 cut(s) 132, 845
StyD4I CCNGG 4 cut(s) 85, 677, 874, 1117
StyI CCWWGG 1 cut(s) 1224
TaaI ACNGT 2 cut(s) 510, 1070
TaqI TCGA 6 cut(s) 60, 333, 479, 491, 745, 1354
TasI AATT 2 cut(s) 472, 1107
TatI WGTACW 1 cut(s) 1290
TfiI GAWTC 7 cut(s) 79, 157, 289, 316, 661, 793, 929
Tru1I TTAA 4 cut(s) 153, 554, 1065, 1133
Tru9I TTAA 4 cut(s) 153, 554, 1065, 1133
TscAI CASTG 5 cut(s) 167, 188, 220, 1075, 1167
TseFI GTSAC 1 cut(s) 504
TseI GCWGC 7 cut(s) 14, 94, 803, 1039, 1051, 1342, 1376
Tsp45I GTSAC 1 cut(s) 504
TspDTI ATGAA 7 cut(s) 390, 438, 462, 740, 780, 1026, 1163
TspGWI ACGGA 1 cut(s) 881
TspRI CASTG 5 cut(s) 167, 188, 220, 1075, 1167
Vha464I CTTAAG 1 cut(s) 152
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XhoI CTCGAG 2 cut(s) 332, 478
XmiI GTMKAC 2 cut(s) 199, 1190
XspI CTAG 2 cut(s) 132, 845
Zsp2I ATGCAT 1 cut(s) 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.