Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007056

Physical Location & Seq

Genomic Coordinates Reverse (-)

8418078 .. 8420195

Gene Structure 2118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGAATCTGTTGGCCTTCGTCGTTGGATTTGGAATCATGGGTATTGTTATGGTAGATGGGCTAGGTGTCAACTGGGGAACAATGGCTACACATAAGCTTCCACCAAAGAAAGTGGTTCAAATGCTTAAGGACAATAACATTAACAAAGTTAAGCTTTTTGATGCGGATGAGACCACTATGAGTGCACTTTCTGGCTCTGGTCTTGAAGTTATGGTTGCTATTCCTAATGATCAGCTTAAGGTTATGGGAAGTTATGACCGAGCTAAAGATTGGGTTCATAAGAATGTCACTCGTTATAACTTCAATGGTGGTGTCAATATCACGTTTGTAGCTGTTGGAAATGAGCCATTCCTCAAATCATACAATGGATCATTTATAAACCTCACATTCCCTGCACTTCAAAACATCCAAAACGCTTTGAATGAAGCTGGACTAGGAAGCTCCGTCAAAGCGACAGTCCCTTTAAACGCGGATGTCTACGATTCACCATCAAGCAACCCTGTGCCATCTGCAGGAAGATTCCGTCCTGATATCATCGGTCAAATGACTCAGATTGTTGACTTTCTTGGCAATAACAGTGCACCCATCACCATTAACATCTACCCTTTCTTAAGCCTCTATGGGAATGATGATTTTCCACTCAATTACGCCTTCTTTGATGGTGCTAAACCAGTAGATGACAATGGTATTGCTTACACAAACGTTTTCGATGCCAATTTCGACACTTTGGTATCGGCTTTGAAAGCTGTTGGTCATGGAGATATGCCAATCATCGTTGGAGAAGTCGGTTGGCCAACAGAGGGTGACAAACACGCAAATAGTGGCAGTGCTTACAGATTCTACAACGGTCTTTTACCAAGGCTTGGGGAAAACAGAGGCACTCCACTGAGACCAACCTACATTGAGGTATACTTGTTTGGATTACTTGATGAGGATGCGAAAAGTATAGCACCGGGAGAGTTTGAACGCCACTGGGGAATATTCAAATTCGACGGGCAACCAAAGTTTCCTATAGATCTATCAGGTCAAGGACAGAACAAGTTGTTGATTGGTGCCGAGAACGTGACGTATCAACCTAAGAAGTGGTGTATGTTTAATACAGAAGCCAAAGATTTGACAAAACTCGCTGCTAACATAGATTACGCCTGCACTTTTTCGGATTGCACTGCGCTTGGTTACGGGTCTTCTTGCAATACTCTTGATGCAAATGGGAACGCTTCATATGCGTTTAACATGTATTTTCAAGTAAAGAACCAGGATGAGGATGCTTGTATCTTCCAAGGTTTGGCCACCATTACCACAAAGAATATATCTCAGGGACAATGCAATTTCCCTATTCAGATTGTTGCTTCCACAGCTTCTTCATTTTCTTCTTCTTTGGTTTTGTTGATCGCTGGAGTTTGGTTTCTCTTATCAGGAGTGATGTTTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

478

Amino Acids

52.01

Weight (kDa)

4.92

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	21 - 339	2.5e-62	Glycosyl hydrolases family 17
X8	PF07983	361 - 431	1.5e-14	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64760 AT1G64760 AT2G19440 AT2G19440 AT3G04010 AT5G18220
fragaria_vesca	FvH4_1g28000
malus_domestica	MD12G1002300.v1.1 MD14G1001800.v1.1
prunus_persica	Prupe.7G002200_v2.0.a1
pyrus_communis	pycom12g00200 pycom49g00140
rosa_chinensis	RchiOBHm_Chr3g0497411
rosa_laevigata	RLG00000022466
rosa_multiflora	Rmu_sc0006392.1_g000005
rosa_roxburghii	Rroxscaffold_6G00388070
rosa_rugosa	Rorug03G0292700 Rorug03G0292800
rosa_samantha	Rh3AG336300 Rh3BG374400 Rh3CG370500 Rh3DG371400 Rh3DG372900 Rh6DG331700
rosa_wichuraiana	Rw3G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	297, 377
AccB1I	GGYRCC	1 cut(s)	1052
AccB7I	CCANNNNNTGG	2 cut(s)	863, 1285
AccI	GTMKAC	2 cut(s)	477, 909
AccII	CGCG	1 cut(s)	470
AciI	CCGC	2 cut(s)	164, 470
AclI	AACGTT	1 cut(s)	702
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	2 cut(s)	791, 1287
AcsI	RAATTY	1 cut(s)	986
AfiI	CCNNNNNNNGG	5 cut(s)	512, 800, 863, 1261, 1285
AflII	CTTAAG	3 cut(s)	125, 236, 610
AflIII	ACRYGT	1 cut(s)	1233
AgsI	TTSAA	9 cut(s)	119, 206, 304, 401, 421, 742, 965, 985, 1244
AjnI	CCWGG	1 cut(s)	1254
AluBI	AGCT	9 cut(s)	97, 154, 235, 263, 332, 428, 441, 746, 1358
AluI	AGCT	9 cut(s)	97, 154, 235, 263, 332, 428, 441, 746, 1358
Alw21I	GWGCWC	2 cut(s)	187, 583
Alw26I	GTCTC	2 cut(s)	164, 883
Alw44I	GTGCAC	2 cut(s)	183, 579
AlwI	GGATC	1 cut(s)	376
AoxI	GGCC	3 cut(s)	12, 791, 1287
ApaLI	GTGCAC	2 cut(s)	183, 579
ApeKI	GCWGC	1 cut(s)	1127
ApoI	RAATTY	1 cut(s)	986
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AspLEI	GCGC	1 cut(s)	1171
AsuC2I	CCSGG	1 cut(s)	954
AsuHPI	GGTGA	3 cut(s)	477, 580, 815
BaeGI	GKGCMC	2 cut(s)	187, 583
BaeI	ACNNNNGTAYC	2 cut(s)	714, 747
BalI	TGGCCA	2 cut(s)	793, 1289
BanI	GGYRCC	1 cut(s)	1052
BbsI	GAAGAC	1 cut(s)	1176
Bbv12I	GWGCWC	2 cut(s)	187, 583
BbvI	GCAGC	1 cut(s)	1114
BccI	CCATC	5 cut(s)	50, 496, 514, 593, 653
BciT130I	CCWGG	1 cut(s)	1256
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	954
BcoDI	GTCTC	2 cut(s)	164, 883
BfaI	CTAG	2 cut(s)	62, 434
BfmI	CTRYAG	2 cut(s)	510, 1011
BfrI	CTTAAG	3 cut(s)	125, 236, 610
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	1 cut(s)	1128
BlsI	GCNGC	1 cut(s)	1129
Bme1390I	CCNGG	2 cut(s)	954, 1256
BmiI	GGNNCC	1 cut(s)	1054
BmrFI	CCNGG	2 cut(s)	954, 1256
BmrI	ACTGGG	2 cut(s)	82, 982
BmsI	GCATC	5 cut(s)	151, 700, 925, 1192, 1255
BmuI	ACTGGG	2 cut(s)	82, 982
BpiI	GAAGAC	1 cut(s)	1176
BpmI	CTGGAG	1 cut(s)	1416
BpuMI	CCSGG	1 cut(s)	954
BsaI	GGTCTC	2 cut(s)	164, 883
BsaJI	CCNNGG	2 cut(s)	857, 1279
Bsc4I	CCNNNNNNNGG	5 cut(s)	512, 800, 863, 1261, 1285
Bse1I	ACTGG	3 cut(s)	77, 671, 977
BseBI	CCWGG	1 cut(s)	1256
BseDI	CCNNGG	2 cut(s)	857, 1279
BseGI	GGATG	6 cut(s)	172, 405, 478, 940, 1264, 1270
BseLI	CCNNNNNNNGG	5 cut(s)	512, 800, 863, 1261, 1285
BseMII	CTCAG	3 cut(s)	563, 878, 1328
BseNI	ACTGG	3 cut(s)	77, 671, 977
BseSI	GKGCMC	2 cut(s)	187, 583
BseXI	GCAGC	1 cut(s)	1114
BsgI	GTGCAG	2 cut(s)	378, 1132
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	3 cut(s)	14, 793, 1289
BshNI	GGYRCC	1 cut(s)	1052
BsiHKAI	GWGCWC	2 cut(s)	187, 583
BsiSI	CCGG	1 cut(s)	953
BslFI	GGGAC	2 cut(s)	443, 1332
BslI	CCNNNNNNNGG	5 cut(s)	512, 800, 863, 1261, 1285
BsmAI	GTCTC	2 cut(s)	164, 883
BsmFI	GGGAC	2 cut(s)	443, 1332
BsnI	GGCC	3 cut(s)	14, 793, 1289
Bso31I	GGTCTC	2 cut(s)	164, 883
Bsp1286I	GDGCHC	2 cut(s)	187, 583
Bsp143I	GATC	4 cut(s)	229, 368, 1015, 1389
BspACI	CCGC	2 cut(s)	164, 470
BspANI	GGCC	3 cut(s)	14, 793, 1289
BspCNI	CTCAG	3 cut(s)	562, 879, 1327
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	1054
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	1052
BspTI	CTTAAG	3 cut(s)	125, 236, 610
BspTNI	GGTCTC	2 cut(s)	164, 883
BsrI	ACTGG	3 cut(s)	77, 671, 977
BssECI	CCNNGG	2 cut(s)	857, 1279
BssMI	GATC	4 cut(s)	229, 368, 1015, 1389
BssNAI	GTATAC	1 cut(s)	910
BssT1I	CCWWGG	2 cut(s)	857, 1279
Bst1107I	GTATAC	1 cut(s)	910
Bst2UI	CCWGG	1 cut(s)	1256
Bst4CI	ACNGT	3 cut(s)	457, 578, 848
BstAFI	CTTAAG	3 cut(s)	125, 236, 610
BstC8I	GCNNGC	1 cut(s)	1147
BstDEI	CTNAG	4 cut(s)	549, 887, 1077, 1314
BstF5I	GGATG	6 cut(s)	172, 405, 478, 940, 1264, 1270
BstFNI	CGCG	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	1171
BstKTI	GATC	4 cut(s)	232, 371, 1018, 1392
BstMAI	GTCTC	2 cut(s)	164, 883
BstMBI	GATC	4 cut(s)	229, 368, 1015, 1389
BstMWI	GCNNNNNNNGC	3 cut(s)	743, 1223, 1355
BstNI	CCWGG	1 cut(s)	1256
BstNSI	RCATGY	1 cut(s)	1237
BstSCI	CCNGG	2 cut(s)	952, 1254
BstSFI	CTRYAG	2 cut(s)	510, 1011
BstSLI	GKGCMC	2 cut(s)	187, 583
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	1 cut(s)	1114
BstV2I	GAAGAC	1 cut(s)	1176
BstX2I	RGATCY	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	1015
BstZ17I	GTATAC	1 cut(s)	910
BsuRI	GGCC	3 cut(s)	14, 793, 1289
BtsCI	GGATG	6 cut(s)	172, 405, 478, 940, 1264, 1270
BtsI	GCAGTG	2 cut(s)	832, 1164
BtsIMutI	CAGTG	5 cut(s)	583, 832, 884, 970, 1164
Cac8I	GCNNGC	1 cut(s)	1147
CfoI	GCGC	1 cut(s)	1171
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviAII	CATG	3 cut(s)	37, 755, 1234
DdeI	CTNAG	4 cut(s)	549, 887, 1077, 1314
DpnI	GATC	4 cut(s)	231, 370, 1017, 1391
DpnII	GATC	4 cut(s)	229, 368, 1015, 1389
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	2 cut(s)	791, 1287
Eco130I	CCWWGG	2 cut(s)	857, 1279
Eco31I	GGTCTC	2 cut(s)	164, 883
Eco32I	GATATC	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	1254
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	857, 1279
ErhI	CCWWGG	2 cut(s)	857, 1279
FaeI	CATG	3 cut(s)	40, 758, 1237
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	2 cut(s)	443, 1332
FatI	CATG	3 cut(s)	36, 754, 1233
FauNDI	CATATG	1 cut(s)	1222
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	2 cut(s)	477, 909
Fnu4HI	GCNGC	1 cut(s)	1128
FokI	GGATG	6 cut(s)	179, 392, 485, 947, 1271, 1277
Fsp4HI	GCNGC	1 cut(s)	1128
FspBI	CTAG	2 cut(s)	62, 434
GlaI	GCGC	1 cut(s)	1170
GluI	GCNGC	1 cut(s)	1128
GsuI	CTGGAG	1 cut(s)	1416
HaeIII	GGCC	3 cut(s)	14, 793, 1289
HapII	CCGG	1 cut(s)	953
HhaI	GCGC	1 cut(s)	1171
Hin1II	CATG	3 cut(s)	40, 758, 1237
Hin6I	GCGC	1 cut(s)	1169
HinP1I	GCGC	1 cut(s)	1169
HincII	GTYRAC	2 cut(s)	70, 559
HindII	GTYRAC	2 cut(s)	70, 559
HindIII	AAGCTT	2 cut(s)	95, 152
HinfI	GANTC	6 cut(s)	4, 33, 482, 519, 547, 837
HpaII	CCGG	1 cut(s)	953
HphI	GGTGA	3 cut(s)	477, 580, 815
Hpy166II	GTNNAC	6 cut(s)	70, 185, 478, 559, 581, 910
Hpy188I	TCNGA	3 cut(s)	552, 1159, 1341
Hpy188III	TCNNGA	4 cut(s)	203, 527, 1199, 1416
Hpy8I	GTNNAC	6 cut(s)	70, 185, 478, 559, 581, 910
Hpy99I	CGWCG	2 cut(s)	23, 995
HpyAV	CCTTC	2 cut(s)	25, 661
HpyCH4III	ACNGT	3 cut(s)	457, 578, 848
HpyCH4IV	ACGT	4 cut(s)	323, 702, 1062, 1067
HpyCH4V	TGCA	9 cut(s)	185, 395, 512, 581, 1149, 1164, 1191, 1205, 1326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	743, 1223, 1355
HpyF3I	CTNAG	4 cut(s)	549, 887, 1077, 1314
HpySE526I	ACGT	4 cut(s)	323, 702, 1062, 1067
Hsp92II	CATG	3 cut(s)	40, 758, 1237
HspAI	GCGC	1 cut(s)	1169
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	229, 368, 1015, 1389
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	1 cut(s)	1114
LweI	GCATC	5 cut(s)	151, 700, 925, 1192, 1255
MaeI	CTAG	2 cut(s)	62, 434
MaeII	ACGT	4 cut(s)	323, 702, 1062, 1067
MaeIII	GTNAC	4 cut(s)	286, 803, 1063, 1175
MalI	GATC	4 cut(s)	231, 370, 1017, 1391
MboI	GATC	4 cut(s)	229, 368, 1015, 1389
MboII	GAAGA	6 cut(s)	528, 1176, 1267, 1353, 1362, 1365
MflI	RGATCY	1 cut(s)	1015
MhlI	GDGCHC	2 cut(s)	187, 583
MlsI	TGGCCA	2 cut(s)	793, 1289
MluCI	AATT	4 cut(s)	643, 715, 986, 1327
MluNI	TGGCCA	2 cut(s)	793, 1289
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	3 cut(s)	4, 316, 757
MnlI	CCTC	9 cut(s)	362, 392, 626, 793, 869, 898, 925, 1255, 1423
Mox20I	TGGCCA	2 cut(s)	793, 1289
MscI	TGGCCA	2 cut(s)	793, 1289
MseI	TTAA	9 cut(s)	126, 141, 150, 237, 464, 594, 611, 1095, 1230
MslI	CAYNNNNRTG	1 cut(s)	282
Msp20I	TGGCCA	2 cut(s)	793, 1289
MspCI	CTTAAG	3 cut(s)	125, 236, 610
MspI	CCGG	1 cut(s)	953
MspR9I	CCNGG	2 cut(s)	954, 1256
MvaI	CCWGG	1 cut(s)	1256
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	3 cut(s)	743, 1223, 1355
NciI	CCSGG	1 cut(s)	954
NdeI	CATATG	1 cut(s)	1222
NdeII	GATC	4 cut(s)	229, 368, 1015, 1389
NlaIII	CATG	3 cut(s)	40, 758, 1237
NlaIV	GGNNCC	1 cut(s)	1054
NmeAIII	GCCGAG	1 cut(s)	1081
NmuCI	GTSAC	3 cut(s)	286, 803, 1063
NspI	RCATGY	1 cut(s)	1237
PciI	ACATGT	1 cut(s)	1233
PfeI	GAWTC	5 cut(s)	4, 33, 482, 519, 837
PflMI	CCANNNNNTGG	2 cut(s)	863, 1285
PkrI	GCNGC	1 cut(s)	1129
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PscI	ACATGT	1 cut(s)	1233
PsiI	TTATAA	2 cut(s)	297, 377
Psp1406I	AACGTT	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	1254
PspGI	CCWGG	1 cut(s)	1254
PspN4I	GGNNCC	1 cut(s)	1054
PsrI	GAACNNNNNNTAC	2 cut(s)	70, 102
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	1015
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	9 cut(s)	126, 141, 150, 237, 464, 594, 611, 1095, 1230
SatI	GCNGC	1 cut(s)	1128
Sau3AI	GATC	4 cut(s)	229, 368, 1015, 1389
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	2 cut(s)	954, 1256
SduI	GDGCHC	2 cut(s)	187, 583
SfaNI	GCATC	5 cut(s)	151, 700, 925, 1192, 1255
SfcI	CTRYAG	2 cut(s)	510, 1011
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	3 cut(s)	125, 236, 610
SmoI	CTYRAG	3 cut(s)	125, 236, 610
Sse9I	AATT	4 cut(s)	643, 715, 986, 1327
SsiI	CCGC	2 cut(s)	164, 470
SspI	AATATT	1 cut(s)	981
SspMI	CTAG	2 cut(s)	62, 434
StyD4I	CCNGG	2 cut(s)	952, 1254
StyI	CCWWGG	2 cut(s)	857, 1279
TaaI	ACNGT	3 cut(s)	457, 578, 848
TaiI	ACGT	4 cut(s)	326, 705, 1065, 1070
TaqI	TCGA	3 cut(s)	708, 720, 990
TaqII	GACCGA	2 cut(s)	273, 527
TasI	AATT	4 cut(s)	643, 715, 986, 1327
TfiI	GAWTC	5 cut(s)	4, 33, 482, 519, 837
Tru1I	TTAA	9 cut(s)	126, 141, 150, 237, 464, 594, 611, 1095, 1230
Tru9I	TTAA	9 cut(s)	126, 141, 150, 237, 464, 594, 611, 1095, 1230
TscAI	CASTG	5 cut(s)	583, 832, 891, 977, 1171
TseFI	GTSAC	3 cut(s)	286, 803, 1063
TseI	GCWGC	1 cut(s)	1127
Tsp45I	GTSAC	3 cut(s)	286, 803, 1063
TspDTI	ATGAA	5 cut(s)	17, 266, 438, 1209, 1353
TspGWI	ACGGA	2 cut(s)	433, 512
TspRI	CASTG	5 cut(s)	583, 832, 891, 977, 1171
Van91I	CCANNNNNTGG	2 cut(s)	863, 1285
Vha464I	CTTAAG	3 cut(s)	125, 236, 610
VneI	GTGCAC	2 cut(s)	183, 579
XapI	RAATTY	1 cut(s)	986
XceI	RCATGY	1 cut(s)	1237
XmiI	GTMKAC	2 cut(s)	477, 909
XspI	CTAG	2 cut(s)	62, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.