Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007056

Physical Location & Seq

Genomic Coordinates Forward (+)

273991 .. 275977

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGATCGAGCTGGCTGTCTTGACCAGCTACAAACGTGCCAAAGAATGGGTCCGCCGCAACGTCACCCGGTACAATTTCAACGGAGGAGTTAACATCAAATATGTAGCAGTTGGGAATGAGCCTTTCCTCTCATCGTACAATGGTTCATTCCTGAATGTTACGTTCCCAGCACTTCAGAACATTCAGAATGCCCTTAATGAAGCTGGAGTTGGAGATTCGGTAAAGGCTACTGTGCCCTTAAATGCTGATGTCTACGACTCACCAGAAAACAACCCCGTGCCATCTGCAGGAAGGTTCCGGACTGATATTCTTCAACTGATGACCGAGATTGTCCAGTTCCTAGACAAAAATAAGGCGCCTTTCACCATAAACATCTACCCTTTCCTGAGTTTATATGGCAATGACGGCTTCCCATTCAACTATGCCTTCTTTGATGGGGATACCACTCCCATTGTTGACACAACCACTGGGATTCAGTACACCAATGTTTTCGATGCTAATTTTGATACCTTGGTCTCTTCCTTGAAAGCAGTGGGATTTGGGAATATGCCCATTGTGGTTGGGGAGGTGGGATGGCCTACAGACGGGGACAAGAATGCCAATGTAGGGAATGCTTTTAGGTTTTATAACGGGCTTCTGACAAGACTTGGAACCAACAGAGGCACCCCACTGCGAACTGGATACATTGAAGTTTACTTGTTTGGACTTATTGATGAGGATGCAAAGAGCATTGCTCCAGGAAGTTTTGAGCGTCATTGGGGAATTTTCAGTTACGATGGACAGCCCAAGTTCCCGGTCGATCTTTCTGGTCAGGGTCAAAACAAGTTACTAGTGCCTGCAAAGAATGTGCAGTATCTTTCGAAAAAATGGTGCATGTTTAACCCGAACGCCAAAGATGTGAGCAATCTGGCAGATAAAATAAATTATGCTTGCACCTATGCGGATTGCACAGCATTGGAATATGGTTCTTCTTGCAACAATTTGGATGCGAACGGGAATGCTTCGTATGCGTTTAATATGTACTACCAGGTTCAGAATCAGGATGATCAGTCGTGTAACTTCCAAGGTTTGGCTACGTTGACGACACAGAACGTCTCACAAGGGAATTGCAATTTCATAATTCAGATGGCGACTTCATCTGCATTTTCTCTAAGACCCTCCGCCGCCGCCTCCTCATTGGTAGCCTGGCTAGTTATGTTACTGTCCGCTTTGCTGTTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

408

Amino Acids

44.76

Weight (kDa)

4.97

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64760 AT1G64760 AT2G19440 AT2G19440 AT3G04010 AT5G18220
fragaria_vesca	FvH4_1g28000
malus_domestica	MD12G1002300.v1.1 MD14G1001800.v1.1
prunus_persica	Prupe.7G002200_v2.0.a1
pyrus_communis	pycom12g00200 pycom49g00140
rosa_chinensis	RchiOBHm_Chr3g0497411
rosa_laevigata	RLG00000022466
rosa_multiflora	Rmu_sc0006392.1_g000005
rosa_roxburghii	Rroxscaffold_6G00388070
rosa_rugosa	Rorug03G0292700 Rorug03G0292800
rosa_samantha	Rh3AG336300 Rh3BG374400 Rh3CG370500 Rh3DG371400 Rh3DG372900 Rh6DG331700
rosa_wichuraiana	Rw3G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AccB1I	GGYRCC	2 cut(s)	355, 662
AccB7I	CCANNNNNTGG	2 cut(s)	45, 1069
AccI	GTMKAC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	7 cut(s)	52, 55, 941, 1161, 1164, 1167, 1206
AcsI	RAATTY	1 cut(s)	762
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	4 cut(s)	71, 137, 479, 1022
AfiI	CCNNNNNNNGG	5 cut(s)	45, 287, 584, 606, 1069
AgsI	TTSAA	5 cut(s)	79, 314, 418, 526, 689
AhlI	ACTAGT	1 cut(s)	829
AjnI	CCWGG	3 cut(s)	736, 1026, 1184
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	3 cut(s)	10, 27, 203
AluI	AGCT	3 cut(s)	10, 27, 203
Alw26I	GTCTC	2 cut(s)	520, 1099
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	762
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	2 cut(s)	67, 794
AsuHPI	GGTGA	3 cut(s)	55, 252, 355
AsuII	TTCGAA	1 cut(s)	860
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	237
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanI	GGYRCC	2 cut(s)	355, 662
BccI	CCATC	5 cut(s)	289, 428, 567, 770, 1120
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	3 cut(s)	738, 1028, 1186
BciVI	GTATCC	2 cut(s)	433, 674
BclI	TGATCA	1 cut(s)	1045
BcnI	CCSGG	2 cut(s)	67, 794
BcoDI	GTCTC	2 cut(s)	520, 1099
BcuI	ACTAGT	1 cut(s)	829
BfaI	CTAG	3 cut(s)	341, 830, 1190
BfmI	CTRYAG	3 cut(s)	285, 579, 1220
BfoI	RGCGCY	1 cut(s)	359
BfuI	GTATCC	2 cut(s)	433, 674
BisI	GCNGC	3 cut(s)	55, 1164, 1167
BlsI	GCNGC	3 cut(s)	56, 1165, 1168
Bme1390I	CCNGG	5 cut(s)	67, 738, 794, 1028, 1186
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	5 cut(s)	50, 296, 357, 652, 664
BmrFI	CCNGG	5 cut(s)	67, 738, 794, 1028, 1186
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	3 cut(s)	484, 709, 976
BmuI	ACTGGG	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	718, 750
BpmI	CTGGAG	2 cut(s)	225, 720
Bpu14I	TTCGAA	1 cut(s)	860
BpuMI	CCSGG	2 cut(s)	67, 794
BsaHI	GRCGYC	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	510, 1063
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 287, 584, 606, 1069
Bse1I	ACTGG	3 cut(s)	334, 472, 682
Bse3DI	GCAATG	2 cut(s)	406, 729
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	3 cut(s)	738, 1028, 1186
BseDI	CCNNGG	2 cut(s)	510, 1063
BseGI	GGATG	4 cut(s)	578, 724, 991, 1048
BseLI	CCNNNNNNNGG	5 cut(s)	45, 287, 584, 606, 1069
BseMI	GCAATG	2 cut(s)	406, 729
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	3 cut(s)	334, 472, 682
BseRI	GAGGAG	2 cut(s)	99, 1162
BseSI	GKGCMC	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	869
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	1 cut(s)	577
BshNI	GGYRCC	2 cut(s)	355, 662
BsiEI	CGRYCG	1 cut(s)	798
BsiSI	CCGG	3 cut(s)	67, 298, 794
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	5 cut(s)	45, 287, 584, 606, 1069
BsmAI	GTCTC	2 cut(s)	520, 1099
BsmBI	CGTCTC	1 cut(s)	1099
BsmFI	GGGAC	1 cut(s)	602
BsmI	GAATGC	4 cut(s)	193, 601, 616, 1003
BsnI	GGCC	1 cut(s)	577
Bso31I	GGTCTC	1 cut(s)	520
Bsp119I	TTCGAA	1 cut(s)	860
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	3, 799, 1045
BspACI	CCGC	7 cut(s)	52, 55, 941, 1161, 1164, 1167, 1206
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	297
BspLI	GGNNCC	5 cut(s)	50, 296, 357, 652, 664
BspMAI	CTGCAG	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	860
BspT107I	GGYRCC	2 cut(s)	355, 662
BspTNI	GGTCTC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	406, 729
BsrI	ACTGG	3 cut(s)	334, 472, 682
BssECI	CCNNGG	2 cut(s)	510, 1063
BssMI	GATC	3 cut(s)	3, 799, 1045
BssNI	GRCGYC	1 cut(s)	356
BssT1I	CCWWGG	2 cut(s)	510, 1063
Bst2UI	CCWGG	3 cut(s)	738, 1028, 1186
Bst4CI	ACNGT	2 cut(s)	232, 1203
Bst6I	CTCTTC	1 cut(s)	523
BstACI	GRCGYC	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	860
BstC8I	GCNNGC	3 cut(s)	12, 837, 931
BstDEI	CTNAG	2 cut(s)	386, 1151
BstF5I	GGATG	4 cut(s)	578, 724, 991, 1048
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	6, 802, 1048
BstMAI	GTCTC	2 cut(s)	520, 1099
BstMBI	GATC	3 cut(s)	3, 799, 1045
BstMCI	CGRYCG	1 cut(s)	798
BstMWI	GCNNNNNNNGC	2 cut(s)	405, 1007
BstNI	CCWGG	3 cut(s)	738, 1028, 1186
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	5 cut(s)	65, 736, 792, 1026, 1184
BstSFI	CTRYAG	3 cut(s)	285, 579, 1220
BstSLI	GKGCMC	1 cut(s)	237
BsuI	GTATCC	2 cut(s)	433, 674
BsuRI	GGCC	1 cut(s)	577
BtsCI	GGATG	4 cut(s)	578, 724, 991, 1048
BtsI	GCAGTG	2 cut(s)	537, 668
BtsIMutI	CAGTG	3 cut(s)	465, 537, 668
Cac8I	GCNNGC	3 cut(s)	12, 837, 931
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	740
CsiI	ACCWGGT	1 cut(s)	1026
Csp6I	GTAC	4 cut(s)	70, 136, 478, 1021
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	1 cut(s)	874
CviQI	GTAC	4 cut(s)	70, 136, 478, 1021
DdeI	CTNAG	2 cut(s)	386, 1151
DinI	GGCGCC	1 cut(s)	357
DpnI	GATC	3 cut(s)	5, 801, 1047
DpnII	GATC	3 cut(s)	3, 799, 1045
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
EciI	GGCGGA	2 cut(s)	41, 1150
Eco130I	CCWWGG	2 cut(s)	510, 1063
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	736, 1026, 1184
EcoT14I	CCWWGG	2 cut(s)	510, 1063
EgeI	GGCGCC	1 cut(s)	357
EheI	GGCGCC	1 cut(s)	357
ErhI	CCWWGG	2 cut(s)	510, 1063
Esp3I	CGTCTC	1 cut(s)	1099
FaeI	CATG	1 cut(s)	877
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	1 cut(s)	873
FbaI	TGATCA	1 cut(s)	1045
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	55, 1164, 1167
FokI	GGATG	4 cut(s)	585, 731, 998, 1055
Fsp4HI	GCNGC	3 cut(s)	55, 1164, 1167
FspBI	CTAG	3 cut(s)	341, 830, 1190
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	55, 1164, 1167
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	2 cut(s)	225, 720
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	577
HapII	CCGG	3 cut(s)	67, 298, 794
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	1 cut(s)	877
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	3 cut(s)	91, 457, 1080
HindII	GTYRAC	3 cut(s)	91, 457, 1080
HinfI	GANTC	4 cut(s)	215, 257, 472, 1036
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	3 cut(s)	67, 298, 794
HphI	GGTGA	3 cut(s)	55, 252, 355
Hpy166II	GTNNAC	6 cut(s)	91, 253, 457, 480, 694, 1080
Hpy188I	TCNGA	5 cut(s)	177, 186, 639, 1035, 1125
Hpy188III	TCNNGA	5 cut(s)	19, 151, 298, 385, 1040
Hpy8I	GTNNAC	6 cut(s)	91, 253, 457, 480, 694, 1080
HpyAV	CCTTC	2 cut(s)	285, 436
HpyCH4III	ACNGT	2 cut(s)	232, 1203
HpyCH4IV	ACGT	5 cut(s)	34, 60, 161, 1076, 1092
HpyF10VI	GCNNNNNNNGC	2 cut(s)	405, 1007
HpyF3I	CTNAG	2 cut(s)	386, 1151
HpySE526I	ACGT	5 cut(s)	34, 60, 161, 1076, 1092
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	1 cut(s)	877
HspAI	GCGC	1 cut(s)	356
KasI	GGCGCC	1 cut(s)	355
Kpn2I	TCCGGA	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	1045
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	3, 799, 1045
LmnI	GCTCC	1 cut(s)	739
LweI	GCATC	3 cut(s)	484, 709, 976
MabI	ACCWGGT	1 cut(s)	1026
MaeI	CTAG	3 cut(s)	341, 830, 1190
MaeII	ACGT	5 cut(s)	34, 60, 161, 1076, 1092
MaeIII	GTNAC	6 cut(s)	61, 157, 770, 825, 1055, 1197
MalI	GATC	3 cut(s)	5, 801, 1047
MboI	GATC	3 cut(s)	3, 799, 1045
MboII	GAAGA	3 cut(s)	302, 510, 960
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	8 cut(s)	73, 499, 762, 922, 979, 1105, 1111, 1119
Mly113I	GGCGCC	1 cut(s)	356
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	8 cut(s)	77, 137, 559, 653, 709, 1168, 1180, 1183
MroI	TCCGGA	1 cut(s)	297
MseI	TTAA	5 cut(s)	90, 195, 239, 879, 1014
MspI	CCGG	3 cut(s)	67, 298, 794
MspR9I	CCNGG	5 cut(s)	67, 738, 794, 1028, 1186
Mva1269I	GAATGC	4 cut(s)	193, 601, 616, 1003
MvaI	CCWGG	3 cut(s)	738, 1028, 1186
MwoI	GCNNNNNNNGC	2 cut(s)	405, 1007
NarI	GGCGCC	1 cut(s)	356
NciI	CCSGG	2 cut(s)	67, 794
NdeII	GATC	3 cut(s)	3, 799, 1045
NlaIII	CATG	1 cut(s)	877
NlaIV	GGNNCC	5 cut(s)	50, 296, 357, 652, 664
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	877
NspV	TTCGAA	1 cut(s)	860
PctI	GAATGC	4 cut(s)	193, 601, 616, 1003
PfeI	GAWTC	3 cut(s)	215, 472, 1036
PflMI	CCANNNNNTGG	2 cut(s)	45, 1069
PfoI	TCCNGGA	1 cut(s)	736
PkrI	GCNGC	3 cut(s)	56, 1165, 1168
PleI	GAGTC	1 cut(s)	251
PluTI	GGCGCC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	251
PsiI	TTATAA	1 cut(s)	627
Psp6I	CCWGG	3 cut(s)	736, 1026, 1184
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	3 cut(s)	736, 1026, 1184
PspN4I	GGNNCC	5 cut(s)	50, 296, 357, 652, 664
PspPI	GGNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	289
RsaI	GTAC	4 cut(s)	71, 137, 479, 1022
RsaNI	GTAC	4 cut(s)	70, 136, 478, 1021
SaqAI	TTAA	5 cut(s)	90, 195, 239, 879, 1014
SatI	GCNGC	3 cut(s)	55, 1164, 1167
Sau3AI	GATC	3 cut(s)	3, 799, 1045
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	5 cut(s)	67, 738, 794, 1028, 1186
SduI	GDGCHC	1 cut(s)	237
SexAI	ACCWGGT	1 cut(s)	1026
SfaNI	GCATC	3 cut(s)	484, 709, 976
SfcI	CTRYAG	3 cut(s)	285, 579, 1220
SfoI	GGCGCC	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	860
SinI	GGWCC	1 cut(s)	49
SpeI	ACTAGT	1 cut(s)	829
Sse9I	AATT	8 cut(s)	73, 499, 762, 922, 979, 1105, 1111, 1119
SsiI	CCGC	7 cut(s)	52, 55, 941, 1161, 1164, 1167, 1206
SspDI	GGCGCC	1 cut(s)	355
SspMI	CTAG	3 cut(s)	341, 830, 1190
StyD4I	CCNGG	5 cut(s)	65, 736, 792, 1026, 1184
StyI	CCWWGG	2 cut(s)	510, 1063
TaaI	ACNGT	2 cut(s)	232, 1203
TaiI	ACGT	5 cut(s)	37, 63, 164, 1079, 1095
TaqI	TCGA	4 cut(s)	6, 492, 798, 860
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	8 cut(s)	73, 499, 762, 922, 979, 1105, 1111, 1119
TatI	WGTACW	2 cut(s)	477, 1020
TauI	GCSGC	3 cut(s)	57, 1166, 1169
TfiI	GAWTC	3 cut(s)	215, 472, 1036
Tru1I	TTAA	5 cut(s)	90, 195, 239, 879, 1014
Tru9I	TTAA	5 cut(s)	90, 195, 239, 879, 1014
TscAI	CASTG	3 cut(s)	472, 537, 675
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	4 cut(s)	135, 213, 1105, 1125
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	3 cut(s)	472, 537, 675
Van91I	CCANNNNNTGG	2 cut(s)	45, 1069
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	762
XceI	RCATGY	1 cut(s)	877
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	3 cut(s)	341, 830, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.