MD12G1002300.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
393281 .. 395988
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1002300.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGGAAAGGATGATGTGGGTTTTGGTTGGGGTGGCTGTGTTGTGTGTTTACGGCGGTGGTGGTGGTGTGGAAGGTCTTGGTGTGAATTGGGGAACGATGGCAACCCACGAGTTGCCGCCGGATACGGTGATTCAGATTCTAAAGGACAATGGGATTCCGAAGGTGAAGCTTTTTGATGCAGACGAGTCGACCATGAGTGCCTTAACTGGCAGTGGTCTTGAGGTCATGGTTGCTATTCCTAATGATCAGCTTGCTGTCATGACCAGCTACAAACGTGCCAAAGAATGGGTCCGCCGCAACGTCACTCGCTACAATTTCAACGGAGGAGTTAACATCAAATATGTAGCAGTTGGGAATGAGCCTTTCCTCTCATCGTACAATGGTTCATTCCTGAATGTTACGTTCCCAGCACTTCAGAACATTCAAAATGCCCTTAATGAAGCCGGAGTTGGAGATTCGGTAAAGGCTACTGTGCCCTTAAATGCTGATGTCTACGACTCACCAGTAGACAACCCTGTGCCATCTGCAGGAAGGTTCCGGACTGATATTCTTCAACTGATGACCGAGATTGTCCAGTTCCTAGACAAAAATAAGGCGCCTTTCACCATAAACATCTACCCTTTCCTGAGTTTATATGGCAATGATGGCTTCCCATTCAACTATGCCTTCTTTGATGGGGATACCACTCCCATTGTTGACACAGGCACTGGGATTCAGTACACCAATGTTTTCGATGCTAATTTTGATACCTTGGTCTCTTCCTTGAAAGCAGTGGGATTTGGGAATATGCCCATTGTGGTTGGGGAGGTGGGATGGCCGACAGATGGGGACAAGAATGCCAATGTAGGGAATGCTTTTAGATTTTATAACGGGCTTCTAACAAGACTTGGAACCAACAAAGGCACCCCACTGCGAACTGGATACATTGAAGTTTACTTGTTTGGACTTATTGATGAGGATGCAAAGAGCATTGCTCCCGGAAGTTTTGAGCGTCATTGGGGAATTTTCAGTTACGATGGACAGCCCAAGTTCCCAGTCGATCTTTCTGGTCAGGGTCAAAACAAGTTACTAGTGCCTGCAAAGAATGTGCTGTATCTTTCGAAAAAATGGTGCATGCTTAACCCGAACGCCAAAGATGTGAGCAATCTGGCAGATAAAATAAATTATGCTTGCACCTATGCGGATTGCACGGCATTGGAATATGGTTCTTCTTGCAACAATTTGGATGCGAACGGGAATGCTTCGTATGCGTTTAATATGTACTACCAGGTTCAGGATCAGGATGATCAGTCGTGTAGCTTCCAAGGTTTGGCTACGTTGACGACACAGAACATCTCACAAGGGAATTGCAATTTCATAATTCAGATGGCAACAACTTCATCTGCATTTTCTCTAAGACCCTCTGCCGCCGCCGCCTCACTGGTAACCTCGCTGGTTTTGTTACCGTCCGCTTTGCTGTTGCTATAG

Protein Analysis

489

Amino Acids

52.93

Weight (kDa)

4.73

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 347 3.7e-62 Glycosyl hydrolases family 17
X8 PF07983 369 - 439 2.9e-16 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
AccB1I GGYRCC 2 cut(s) 595, 902
AccB7I CCANNNNNTGG 2 cut(s) 285, 1309
AccI GTMKAC 3 cut(s) 188, 492, 507
AccIII TCCGGA 1 cut(s) 537
AciI CCGC 9 cut(s) 54, 116, 292, 295, 1181, 1407, 1410, 1413, 1449
AclWI GGATC 1 cut(s) 1284
AcoI YGGCCR 1 cut(s) 815
AcsI RAATTY 1 cut(s) 1002
AcuI CTGAAG 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 3 cut(s) 377, 719, 1262
AfiI CCNNNNNNNGG 6 cut(s) 285, 527, 824, 846, 1273, 1309
AgsI TTSAA 6 cut(s) 319, 425, 554, 658, 766, 929
AhlI ACTAGT 1 cut(s) 1069
AjnI CCWGG 1 cut(s) 1266
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 4 cut(s) 169, 250, 267, 1299
AluI AGCT 4 cut(s) 169, 250, 267, 1299
Alw26I GTCTC 1 cut(s) 760
AlwI GGATC 1 cut(s) 1284
AlwNI CAGNNNCTG 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 537
AoxI GGCC 1 cut(s) 815
ApoI RAATTY 1 cut(s) 1002
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 978
AsuHPI GGTGA 4 cut(s) 139, 175, 492, 595
AsuII TTCGAA 1 cut(s) 1100
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 477
BaeI ACNNNNGTAYC 2 cut(s) 738, 771
BanI GGYRCC 2 cut(s) 595, 902
BauI CACGAG 1 cut(s) 107
BccI CCATC 8 cut(s) 91, 529, 638, 668, 807, 818, 1010, 1360
BceAI ACGGC 2 cut(s) 67, 1206
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 1 cut(s) 1268
BciVI GTATCC 3 cut(s) 115, 673, 914
BclI TGATCA 2 cut(s) 244, 1285
BcnI CCSGG 1 cut(s) 978
BcoDI GTCTC 1 cut(s) 760
BcuI ACTAGT 1 cut(s) 1069
BfaI CTAG 2 cut(s) 581, 1070
BfmI CTRYAG 2 cut(s) 525, 1463
BfoI RGCGCY 1 cut(s) 599
BfuI GTATCC 3 cut(s) 115, 673, 914
BisI GCNGC 5 cut(s) 116, 295, 1407, 1410, 1413
BlsI GCNGC 5 cut(s) 117, 296, 1408, 1411, 1414
Bme1390I CCNGG 2 cut(s) 978, 1268
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 5 cut(s) 290, 536, 597, 892, 904
BmrFI CCNGG 2 cut(s) 978, 1268
BmrI ACTGGG 2 cut(s) 717, 1028
BmsI GCATC 4 cut(s) 166, 724, 949, 1216
BmuI ACTGGG 2 cut(s) 717, 1028
BplI GAGNNNNNCTC 2 cut(s) 958, 990
Bpu14I TTCGAA 1 cut(s) 1100
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 978
BsaHI GRCGYC 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 2 cut(s) 750, 1303
BsaWI WCCGGW 1 cut(s) 537
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 6 cut(s) 285, 527, 824, 846, 1273, 1309
Bse1I ACTGG 7 cut(s) 211, 503, 574, 712, 922, 1034, 1425
Bse3DI GCAATG 2 cut(s) 646, 969
BseAI TCCGGA 1 cut(s) 537
BseBI CCWGG 1 cut(s) 1268
BseDI CCNNGG 2 cut(s) 750, 1303
BseGI GGATG 5 cut(s) 15, 818, 964, 1231, 1288
BseLI CCNNNNNNNGG 6 cut(s) 285, 527, 824, 846, 1273, 1309
BseMI GCAATG 2 cut(s) 646, 969
BseMII CTCAG 1 cut(s) 617
BseNI ACTGG 7 cut(s) 211, 503, 574, 712, 922, 1034, 1425
BseRI GAGGAG 1 cut(s) 339
BseSI GKGCMC 1 cut(s) 477
BseYI CCCAGC 1 cut(s) 406
BshFI GGCC 1 cut(s) 817
BshNI GGYRCC 2 cut(s) 595, 902
BsiSI CCGG 4 cut(s) 119, 444, 538, 978
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 6 cut(s) 285, 527, 824, 846, 1273, 1309
BsmAI GTCTC 1 cut(s) 760
BsmFI GGGAC 1 cut(s) 842
BsmI GAATGC 3 cut(s) 841, 856, 1243
BsnI GGCC 1 cut(s) 817
Bso31I GGTCTC 1 cut(s) 760
Bsp119I TTCGAA 1 cut(s) 1100
Bsp1286I GDGCHC 1 cut(s) 477
Bsp13I TCCGGA 1 cut(s) 537
Bsp143I GATC 4 cut(s) 244, 1039, 1276, 1285
BspACI CCGC 9 cut(s) 54, 116, 292, 295, 1181, 1407, 1410, 1413, 1449
BspANI GGCC 1 cut(s) 817
BspCNI CTCAG 1 cut(s) 618
BspEI TCCGGA 1 cut(s) 537
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 5 cut(s) 290, 536, 597, 892, 904
BspMAI CTGCAG 1 cut(s) 529
BspPI GGATC 1 cut(s) 1284
BspT104I TTCGAA 1 cut(s) 1100
BspT107I GGYRCC 2 cut(s) 595, 902
BspTNI GGTCTC 1 cut(s) 760
BsrDI GCAATG 2 cut(s) 646, 969
BsrI ACTGG 7 cut(s) 211, 503, 574, 712, 922, 1034, 1425
BssECI CCNNGG 2 cut(s) 750, 1303
BssMI GATC 4 cut(s) 244, 1039, 1276, 1285
BssNI GRCGYC 1 cut(s) 596
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 2 cut(s) 750, 1303
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 1268
Bst4CI ACNGT 3 cut(s) 127, 472, 1446
Bst6I CTCTTC 1 cut(s) 763
BstACI GRCGYC 1 cut(s) 596
BstBI TTCGAA 1 cut(s) 1100
BstC8I GCNNGC 4 cut(s) 252, 1077, 1115, 1171
BstDEI CTNAG 2 cut(s) 626, 1394
BstEII GGTNACC 1 cut(s) 1423
BstF5I GGATG 5 cut(s) 15, 818, 964, 1231, 1288
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 4 cut(s) 247, 1042, 1279, 1288
BstMAI GTCTC 1 cut(s) 760
BstMBI GATC 4 cut(s) 244, 1039, 1276, 1285
BstMWI GCNNNNNNNGC 3 cut(s) 645, 1247, 1412
BstNI CCWGG 1 cut(s) 1268
BstNSI RCATGY 1 cut(s) 1117
BstPI GGTNACC 1 cut(s) 1423
BstSCI CCNGG 2 cut(s) 976, 1266
BstSFI CTRYAG 2 cut(s) 525, 1463
BstSLI GKGCMC 1 cut(s) 477
BsuI GTATCC 3 cut(s) 115, 673, 914
BsuRI GGCC 1 cut(s) 817
BtsCI GGATG 5 cut(s) 15, 818, 964, 1231, 1288
BtsI GCAGTG 3 cut(s) 217, 777, 908
BtsIMutI CAGTG 5 cut(s) 217, 705, 777, 908, 1418
Cac8I GCNNGC 4 cut(s) 252, 1077, 1115, 1171
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 1 cut(s) 980
CsiI ACCWGGT 1 cut(s) 1266
Csp6I GTAC 3 cut(s) 376, 718, 1261
CspCI CAANNNNNGTGG 2 cut(s) 673, 708
CviAII CATG 4 cut(s) 193, 226, 259, 1114
CviQI GTAC 3 cut(s) 376, 718, 1261
DdeI CTNAG 2 cut(s) 626, 1394
DinI GGCGCC 1 cut(s) 597
DpnI GATC 4 cut(s) 246, 1041, 1278, 1287
DpnII GATC 4 cut(s) 244, 1039, 1276, 1285
EaeI YGGCCR 1 cut(s) 815
Eam1104I CTCTTC 1 cut(s) 763
EarI CTCTTC 1 cut(s) 763
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 2 cut(s) 750, 1303
Eco31I GGTCTC 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 1423
EcoO65I GGTNACC 1 cut(s) 1423
EcoRII CCWGG 1 cut(s) 1266
EcoT14I CCWWGG 2 cut(s) 750, 1303
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
ErhI CCWWGG 2 cut(s) 750, 1303
FaeI CATG 4 cut(s) 196, 229, 262, 1117
FaqI GGGAC 1 cut(s) 842
FatI CATG 4 cut(s) 192, 225, 258, 1113
FbaI TGATCA 2 cut(s) 244, 1285
FblI GTMKAC 3 cut(s) 188, 492, 507
Fnu4HI GCNGC 5 cut(s) 116, 295, 1407, 1410, 1413
FokI GGATG 5 cut(s) 22, 825, 971, 1238, 1295
Fsp4HI GCNGC 5 cut(s) 116, 295, 1407, 1410, 1413
FspBI CTAG 2 cut(s) 581, 1070
GlaI GCGC 1 cut(s) 597
GluI GCNGC 5 cut(s) 116, 295, 1407, 1410, 1413
GsaI CCCAGC 1 cut(s) 410
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 1 cut(s) 817
HapII CCGG 4 cut(s) 119, 444, 538, 978
HgaI GACGC 1 cut(s) 980
HhaI GCGC 1 cut(s) 598
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 4 cut(s) 196, 229, 262, 1117
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HincII GTYRAC 4 cut(s) 189, 331, 697, 1320
HindII GTYRAC 4 cut(s) 189, 331, 697, 1320
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 7 cut(s) 130, 136, 154, 185, 455, 497, 712
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 4 cut(s) 119, 444, 538, 978
HphI GGTGA 4 cut(s) 139, 175, 492, 595
Hpy166II GTNNAC 9 cut(s) 49, 189, 331, 493, 508, 697, 720, 934, 1320
Hpy188I TCNGA 4 cut(s) 135, 159, 417, 1365
Hpy188III TCNNGA 7 cut(s) 218, 259, 391, 538, 625, 1274, 1280
Hpy8I GTNNAC 9 cut(s) 49, 189, 331, 493, 508, 697, 720, 934, 1320
HpyAV CCTTC 4 cut(s) 65, 154, 525, 676
HpyCH4III ACNGT 3 cut(s) 127, 472, 1446
HpyCH4IV ACGT 4 cut(s) 274, 300, 401, 1316
HpyF10VI GCNNNNNNNGC 3 cut(s) 645, 1247, 1412
HpyF3I CTNAG 2 cut(s) 626, 1394
HpySE526I ACGT 4 cut(s) 274, 300, 401, 1316
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 4 cut(s) 196, 229, 262, 1117
HspAI GCGC 1 cut(s) 596
KasI GGCGCC 1 cut(s) 595
Kpn2I TCCGGA 1 cut(s) 537
Ksp22I TGATCA 2 cut(s) 244, 1285
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 4 cut(s) 244, 1039, 1276, 1285
LmnI GCTCC 1 cut(s) 979
LweI GCATC 4 cut(s) 166, 724, 949, 1216
MabI ACCWGGT 1 cut(s) 1266
MaeI CTAG 2 cut(s) 581, 1070
MaeII ACGT 4 cut(s) 274, 300, 401, 1316
MaeIII GTNAC 6 cut(s) 301, 397, 1010, 1065, 1423, 1440
MalI GATC 4 cut(s) 246, 1041, 1278, 1287
MboI GATC 4 cut(s) 244, 1039, 1276, 1285
MboII GAAGA 3 cut(s) 542, 750, 1200
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 9 cut(s) 85, 313, 739, 1002, 1162, 1219, 1345, 1351, 1359
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 2 cut(s) 194, 491
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 8 cut(s) 214, 317, 377, 799, 949, 1411, 1426, 1438
MroI TCCGGA 1 cut(s) 537
MseI TTAA 6 cut(s) 203, 330, 435, 479, 1119, 1254
MspI CCGG 4 cut(s) 119, 444, 538, 978
MspR9I CCNGG 2 cut(s) 978, 1268
Mva1269I GAATGC 3 cut(s) 841, 856, 1243
MvaI CCWGG 1 cut(s) 1268
MwoI GCNNNNNNNGC 3 cut(s) 645, 1247, 1412
NarI GGCGCC 1 cut(s) 596
NciI CCSGG 1 cut(s) 978
NdeII GATC 4 cut(s) 244, 1039, 1276, 1285
NlaIII CATG 4 cut(s) 196, 229, 262, 1117
NlaIV GGNNCC 5 cut(s) 290, 536, 597, 892, 904
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 1 cut(s) 1117
NspV TTCGAA 1 cut(s) 1100
PaeI GCATGC 1 cut(s) 1117
PagI TCATGA 1 cut(s) 258
PctI GAATGC 3 cut(s) 841, 856, 1243
PfeI GAWTC 5 cut(s) 130, 136, 154, 455, 712
PflMI CCANNNNNTGG 2 cut(s) 285, 1309
PfoI TCCNGGA 1 cut(s) 976
PkrI GCNGC 5 cut(s) 117, 296, 1408, 1411, 1414
PleI GAGTC 2 cut(s) 193, 491
PluTI GGCGCC 1 cut(s) 599
PpsI GAGTC 2 cut(s) 193, 491
PsiI TTATAA 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 1266
PspEI GGTNACC 1 cut(s) 1423
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 1 cut(s) 1266
PspN4I GGNNCC 5 cut(s) 290, 536, 597, 892, 904
PspPI GGNCC 1 cut(s) 289
PstI CTGCAG 1 cut(s) 529
PstNI CAGNNNCTG 1 cut(s) 707
RsaI GTAC 3 cut(s) 377, 719, 1262
RsaNI GTAC 3 cut(s) 376, 718, 1261
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 6 cut(s) 203, 330, 435, 479, 1119, 1254
SatI GCNGC 5 cut(s) 116, 295, 1407, 1410, 1413
Sau3AI GATC 4 cut(s) 244, 1039, 1276, 1285
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 2 cut(s) 194, 491
ScrFI CCNGG 2 cut(s) 978, 1268
SduI GDGCHC 1 cut(s) 477
SexAI ACCWGGT 1 cut(s) 1266
SfaNI GCATC 4 cut(s) 166, 724, 949, 1216
SfcI CTRYAG 2 cut(s) 525, 1463
SfoI GGCGCC 1 cut(s) 597
SfuI TTCGAA 1 cut(s) 1100
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 1069
SphI GCATGC 1 cut(s) 1117
Sse9I AATT 9 cut(s) 85, 313, 739, 1002, 1162, 1219, 1345, 1351, 1359
SsiI CCGC 9 cut(s) 54, 116, 292, 295, 1181, 1407, 1410, 1413, 1449
SspDI GGCGCC 1 cut(s) 595
SspMI CTAG 2 cut(s) 581, 1070
StyD4I CCNGG 2 cut(s) 976, 1266
StyI CCWWGG 2 cut(s) 750, 1303
TaaI ACNGT 3 cut(s) 127, 472, 1446
TaiI ACGT 4 cut(s) 277, 303, 404, 1319
TaqI TCGA 4 cut(s) 188, 732, 1038, 1100
TaqII GACCGA 1 cut(s) 578
TasI AATT 9 cut(s) 85, 313, 739, 1002, 1162, 1219, 1345, 1351, 1359
TatI WGTACW 2 cut(s) 717, 1260
TauI GCSGC 5 cut(s) 118, 297, 1409, 1412, 1415
TfiI GAWTC 5 cut(s) 130, 136, 154, 455, 712
Tru1I TTAA 6 cut(s) 203, 330, 435, 479, 1119, 1254
Tru9I TTAA 6 cut(s) 203, 330, 435, 479, 1119, 1254
TscAI CASTG 5 cut(s) 217, 712, 777, 915, 1425
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 4 cut(s) 375, 453, 1345, 1368
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 5 cut(s) 217, 712, 777, 915, 1425
Van91I CCANNNNNTGG 2 cut(s) 285, 1309
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 1002
XceI RCATGY 1 cut(s) 1117
XmiI GTMKAC 3 cut(s) 188, 492, 507
XspI CTAG 2 cut(s) 581, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.