Rw3G029560

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
45785301 .. 45787593
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029560.1

Sequence Viewer

Length: 1452 bp
ATGGAAAGGGGATATTTGATGATGTTGGCAACAGTGACAGTGGTGGCTGTGTTGGGTTGTTGTTGTGTTGAAGGGCTTGGTGTGAACTGGGGAACCATGGCTACGCATAAGATGCCTCCGGACACCGTTGTCCAGATGCTCAAGGACAATGGCATTCAGAAGGTGAAGCTCTTCGACGCCGAACAGTCGACCATGAGTGCTTTGGCTGGGACTAACATCGAGGTCATGGTTGCCATTCCCAATGATCAACTTGAGGCTATGACCAACTATGCCCGTGCCAAGGAATGGGTCCGGAGGAACGTGACCCGCTACAATTTCAATGGAGGAGTTCACGTCAAGTATGTAGCTGTTGGGAATGAGCCTTTTCTCACATCATACAATGGTTCATTCCTGAATGTCACCTTCCCGGCACTTCAGAACATTCAAAACGCCCTTAATGAAGCTGGGGTTGGAGATTCCATAAAGGCTACTGTGCCCTTGAATGCTGATGTCTACAACTCACCAGAGTCCAATTCCGTCCCATCTGCAGGAAGGTTCCGGAGTGATATCAGTCAACTGATGACTGACATTGTCCAGTTCCTTGCCAAAAACAAGGCGCCTTTCACTGTAAATATTTACCCTTTCCTAAGTCTATATGGAAATGATGGCTTCCCTTTTAACTTTGCCTTCTTTGATGGGGATGCAAATGCCCTTGTCGACACCGCCACTGGGATTCAATATACCAATGTTTTCGATGCTAATTTTGATACCTTGGTTTCTTCCTTGAAAGCAATCGGATTTGGGGATATGACCATTATAGTAGGGGAGGTGGGATGGCCAACAGACGGAGACAAGAATGCCAATGCTGGTAATGCTTACAGATTTTATAACGGGCTTTTTACAAAACTTGGAGCCAATAGAGGCACCCCTCTGCGGCCTGGATATATAGAAGTCTACTTGTTTGGACTTATTGATGAGGATGCAAAGAGCATTGCCCCTGGAAGTTTTGAGCGTCATTGGGGAATTTTCGGTTATGATGGGCAGCCTAAGTTTGCTGTTGACGTTACTGGTCAGGGTCAAAACAAGTTCCTAATGGGTGCAAAGAATGTGCAATATCTTGAAAAGAAATGGTGTGCGTTCAATCCAAACGCCAAAGATCTGAGCAAACTTGCAGATAACATAAACTATGCTTGTACCTATGCAGATTGCACAGCACTGGAATACGGGTCTACTTGCAACAATTTAGATGCTAATGGGAATGCTTCATATGCATTTAATATGTACTATCAGGTTCAGAATCAGGATGATCTATCCTGCAACTTTCAGGGTATGGCGGCCGTGACAACACAGAACATCTCACAAGGGACTTGCAATTTCATTATTCAGATAGCTTCTTCATCTACATTTTCTTTAAGACCCTCTCTACTGGTAGGCACAGTACTCATAGTACTCTTCTCGATACTGTTGCTATAG

Protein Analysis

483

Amino Acids

52.7

Weight (kDa)

4.91

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 347 5.8e-65 Glycosyl hydrolases family 17
X8 PF07983 369 - 438 8.2e-16 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
AasI GACNNNNNNGTC 1 cut(s) 128
AccB1I GGYRCC 2 cut(s) 595, 902
AccB7I CCANNNNNTGG 1 cut(s) 285
AccI GTMKAC 5 cut(s) 188, 492, 696, 933, 1208
AccIII TCCGGA 3 cut(s) 118, 291, 537
AciI CCGC 4 cut(s) 307, 702, 913, 1313
AcoI YGGCCR 2 cut(s) 815, 1314
AcsI RAATTY 1 cut(s) 1002
AcuI CTGAAG 1 cut(s) 398
AcyI GRCGYC 2 cut(s) 177, 596
AfaI GTAC 4 cut(s) 1174, 1262, 1419, 1428
AfiI CCNNNNNNNGG 6 cut(s) 280, 285, 527, 708, 824, 912
AgsI TTSAA 8 cut(s) 71, 319, 425, 481, 716, 766, 1100, 1120
AjiI CACGTC 1 cut(s) 334
AjnI CCWGG 2 cut(s) 916, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 4 cut(s) 169, 347, 443, 1370
AluI AGCT 4 cut(s) 169, 347, 443, 1370
Alw26I GTCTC 1 cut(s) 822
Aor13HI TCCGGA 3 cut(s) 118, 291, 537
AoxI GGCC 3 cut(s) 815, 914, 1314
ApeKI GCWGC 1 cut(s) 1021
ApoI RAATTY 1 cut(s) 1002
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 3 cut(s) 175, 391, 492
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 477
BaeI ACNNNNGTAYC 2 cut(s) 738, 771
BalI TGGCCA 1 cut(s) 817
BanI GGYRCC 2 cut(s) 595, 902
BbvI GCAGC 1 cut(s) 1033
BccI CCATC 5 cut(s) 529, 638, 668, 807, 1010
BceAI ACGGC 1 cut(s) 1301
BcgI CGANNNNNNTGC 1 cut(s) 1426
BciT130I CCWGG 2 cut(s) 918, 978
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 822
BfmI CTRYAG 2 cut(s) 525, 1448
BfoI RGCGCY 1 cut(s) 599
BglII AGATCT 1 cut(s) 1135
BisI GCNGC 3 cut(s) 914, 1022, 1314
BlsI GCNGC 3 cut(s) 915, 1023, 1315
BmcAI AGTACT 2 cut(s) 1419, 1428
Bme1390I CCNGG 3 cut(s) 407, 918, 978
Bme18I GGWCC 1 cut(s) 289
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 6 cut(s) 94, 290, 536, 597, 892, 904
BmrFI CCNGG 3 cut(s) 407, 918, 978
BmrI ACTGGG 2 cut(s) 97, 717
BmsI GCATC 6 cut(s) 102, 126, 670, 724, 949, 1216
BmuI ACTGGG 2 cut(s) 97, 717
BpuEI CTTGAG 2 cut(s) 125, 272
BpuMI CCSGG 1 cut(s) 407
BsaHI GRCGYC 2 cut(s) 177, 596
BsaJI CCNNGG 4 cut(s) 96, 279, 750, 976
BsaWI WCCGGW 3 cut(s) 118, 291, 537
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 6 cut(s) 280, 285, 527, 708, 824, 912
Bse1I ACTGG 6 cut(s) 92, 574, 712, 1051, 1200, 1410
Bse3DI GCAATG 1 cut(s) 969
BseAI TCCGGA 3 cut(s) 118, 291, 537
BseBI CCWGG 2 cut(s) 918, 978
BseDI CCNNGG 4 cut(s) 96, 279, 750, 976
BseGI GGATG 4 cut(s) 685, 818, 964, 1288
BseLI CCNNNNNNNGG 6 cut(s) 280, 285, 527, 708, 824, 912
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 1 cut(s) 1130
BseNI ACTGG 6 cut(s) 92, 574, 712, 1051, 1200, 1410
BseRI GAGGAG 1 cut(s) 339
BseSI GKGCMC 1 cut(s) 477
BseX3I CGGCCG 1 cut(s) 1314
BseXI GCAGC 1 cut(s) 1033
BseYI CCCAGC 2 cut(s) 206, 443
Bsh1285I CGRYCG 1 cut(s) 1317
BshFI GGCC 3 cut(s) 817, 916, 1316
BshNI GGYRCC 2 cut(s) 595, 902
BsiEI CGRYCG 1 cut(s) 1317
BsiSI CCGG 4 cut(s) 119, 292, 407, 538
BslFI GGGAC 3 cut(s) 223, 503, 1357
BslI CCNNNNNNNGG 6 cut(s) 280, 285, 527, 708, 824, 912
BsmAI GTCTC 1 cut(s) 822
BsmFI GGGAC 3 cut(s) 223, 503, 1357
BsmI GAATGC 4 cut(s) 153, 487, 841, 1243
BsnI GGCC 3 cut(s) 817, 916, 1316
Bsp1286I GDGCHC 1 cut(s) 477
Bsp13I TCCGGA 3 cut(s) 118, 291, 537
Bsp143I GATC 3 cut(s) 244, 1135, 1285
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 4 cut(s) 307, 702, 913, 1313
BspANI GGCC 3 cut(s) 817, 916, 1316
BspCNI CTCAG 1 cut(s) 1131
BspEI TCCGGA 3 cut(s) 118, 291, 537
BspLI GGNNCC 6 cut(s) 94, 290, 536, 597, 892, 904
BspMAI CTGCAG 1 cut(s) 529
BspQI GCTCTTC 1 cut(s) 176
BspT107I GGYRCC 2 cut(s) 595, 902
BsrDI GCAATG 1 cut(s) 969
BsrI ACTGG 6 cut(s) 92, 574, 712, 1051, 1200, 1410
BssECI CCNNGG 4 cut(s) 96, 279, 750, 976
BssMI GATC 3 cut(s) 244, 1135, 1285
BssNI GRCGYC 2 cut(s) 177, 596
BssT1I CCWWGG 3 cut(s) 96, 279, 750
Bst2UI CCWGG 2 cut(s) 918, 978
Bst4CI ACNGT 8 cut(s) 34, 40, 127, 186, 472, 607, 1417, 1443
Bst6I CTCTTC 2 cut(s) 176, 1436
BstACI GRCGYC 2 cut(s) 177, 596
BstAPI GCANNNNNTGC 1 cut(s) 112
BstDEI CTNAG 3 cut(s) 626, 1026, 1139
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 4 cut(s) 685, 818, 964, 1288
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 3 cut(s) 247, 1138, 1288
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 3 cut(s) 244, 1135, 1285
BstMCI CGRYCG 1 cut(s) 1317
BstMWI GCNNNNNNNGC 3 cut(s) 112, 851, 1247
BstNI CCWGG 2 cut(s) 918, 978
BstSCI CCNGG 3 cut(s) 405, 916, 976
BstSFI CTRYAG 2 cut(s) 525, 1448
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 1033
BstX2I RGATCY 1 cut(s) 1135
BstYI RGATCY 1 cut(s) 1135
BstZI CGGCCG 1 cut(s) 1314
BsuRI GGCC 3 cut(s) 817, 916, 1316
BtgI CCRYGG 1 cut(s) 96
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 4 cut(s) 685, 818, 964, 1288
BtsIMutI CAGTG 5 cut(s) 39, 45, 603, 705, 1193
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 2 cut(s) 185, 980
Csp6I GTAC 4 cut(s) 1173, 1261, 1418, 1427
CviAII CATG 3 cut(s) 97, 193, 226
CviQI GTAC 4 cut(s) 1173, 1261, 1418, 1427
DdeI CTNAG 3 cut(s) 626, 1026, 1139
DinI GGCGCC 1 cut(s) 597
DpnI GATC 3 cut(s) 246, 1137, 1287
DpnII GATC 3 cut(s) 244, 1135, 1285
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 2 cut(s) 815, 1314
EagI CGGCCG 1 cut(s) 1314
Eam1104I CTCTTC 2 cut(s) 176, 1436
EarI CTCTTC 2 cut(s) 176, 1436
EclXI CGGCCG 1 cut(s) 1314
Eco130I CCWWGG 3 cut(s) 96, 279, 750
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 1 cut(s) 289
Eco52I CGGCCG 1 cut(s) 1314
Eco57I CTGAAG 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 916, 976
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 3 cut(s) 96, 279, 750
EcoT22I ATGCAT 1 cut(s) 1252
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
ErhI CCWWGG 3 cut(s) 96, 279, 750
FaeI CATG 3 cut(s) 100, 196, 229
FaqI GGGAC 3 cut(s) 223, 503, 1357
FatI CATG 3 cut(s) 96, 192, 225
FauI CCCGC 1 cut(s) 314
FauNDI CATATG 1 cut(s) 1246
FbaI TGATCA 1 cut(s) 244
FblI GTMKAC 5 cut(s) 188, 492, 696, 933, 1208
Fnu4HI GCNGC 3 cut(s) 914, 1022, 1314
FokI GGATG 4 cut(s) 692, 825, 971, 1295
Fsp4HI GCNGC 3 cut(s) 914, 1022, 1314
GlaI GCGC 1 cut(s) 597
GluI GCNGC 3 cut(s) 914, 1022, 1314
GsaI CCCAGC 2 cut(s) 210, 447
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 3 cut(s) 817, 916, 1316
HapII CCGG 4 cut(s) 119, 292, 407, 538
HgaI GACGC 2 cut(s) 185, 980
HhaI GCGC 1 cut(s) 598
Hin1I GRCGYC 2 cut(s) 177, 596
Hin1II CATG 3 cut(s) 100, 196, 229
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HincII GTYRAC 4 cut(s) 189, 554, 697, 1039
HindII GTYRAC 4 cut(s) 189, 554, 697, 1039
HinfI GANTC 4 cut(s) 455, 506, 712, 1276
HpaII CCGG 4 cut(s) 119, 292, 407, 538
HphI GGTGA 3 cut(s) 175, 391, 492
Hpy166II GTNNAC 9 cut(s) 85, 189, 331, 493, 554, 697, 934, 1039, 1209
Hpy188I TCNGA 6 cut(s) 159, 417, 776, 1140, 1275, 1365
Hpy188III TCNNGA 8 cut(s) 119, 133, 292, 391, 538, 1097, 1280, 1435
Hpy8I GTNNAC 9 cut(s) 85, 189, 331, 493, 554, 697, 934, 1039, 1209
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 5 cut(s) 65, 154, 412, 525, 676
HpyCH4III ACNGT 8 cut(s) 34, 40, 127, 186, 472, 607, 1417, 1443
HpyCH4IV ACGT 3 cut(s) 300, 333, 1041
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 851, 1247
HpyF3I CTNAG 3 cut(s) 626, 1026, 1139
HpySE526I ACGT 3 cut(s) 300, 333, 1041
Hsp92I GRCGYC 2 cut(s) 177, 596
Hsp92II CATG 3 cut(s) 100, 196, 229
HspAI GCGC 1 cut(s) 596
KasI GGCGCC 1 cut(s) 595
Kpn2I TCCGGA 3 cut(s) 118, 291, 537
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 244, 1135, 1285
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 890
Lsp1109I GCAGC 1 cut(s) 1033
LweI GCATC 6 cut(s) 102, 126, 670, 724, 949, 1216
MaeII ACGT 3 cut(s) 300, 333, 1041
MaeIII GTNAC 5 cut(s) 34, 301, 397, 1042, 1318
MalI GATC 3 cut(s) 246, 1137, 1287
MboI GATC 3 cut(s) 244, 1135, 1285
MboII GAAGA 4 cut(s) 163, 750, 1365, 1423
MflI RGATCY 1 cut(s) 1135
MhlI GDGCHC 1 cut(s) 477
MlsI TGGCCA 1 cut(s) 817
MluCI AATT 6 cut(s) 313, 511, 739, 1002, 1219, 1351
MluNI TGGCCA 1 cut(s) 817
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 430
Mox20I TGGCCA 1 cut(s) 817
Mph1103I ATGCAT 1 cut(s) 1252
MroI TCCGGA 3 cut(s) 118, 291, 537
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 817
MseI TTAA 4 cut(s) 435, 657, 1254, 1391
Msp20I TGGCCA 1 cut(s) 817
MspI CCGG 4 cut(s) 119, 292, 407, 538
MspR9I CCNGG 3 cut(s) 407, 918, 978
Mva1269I GAATGC 4 cut(s) 153, 487, 841, 1243
MvaI CCWGG 2 cut(s) 918, 978
MwoI GCNNNNNNNGC 3 cut(s) 112, 851, 1247
NarI GGCGCC 1 cut(s) 596
NciI CCSGG 1 cut(s) 407
NcoI CCATGG 1 cut(s) 96
NdeI CATATG 1 cut(s) 1246
NdeII GATC 3 cut(s) 244, 1135, 1285
NlaIII CATG 3 cut(s) 100, 196, 229
NlaIV GGNNCC 6 cut(s) 94, 290, 536, 597, 892, 904
NmuCI GTSAC 4 cut(s) 34, 301, 397, 1318
NsiI ATGCAT 1 cut(s) 1252
PciSI GCTCTTC 1 cut(s) 176
PctI GAATGC 4 cut(s) 153, 487, 841, 1243
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 3 cut(s) 455, 712, 1276
PflFI GACNNNGTC 1 cut(s) 569
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 3 cut(s) 915, 1023, 1315
PleI GAGTC 1 cut(s) 514
PluTI GGCGCC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 514
PsiI TTATAA 1 cut(s) 867
Psp6I CCWGG 2 cut(s) 916, 976
PspFI CCCAGC 2 cut(s) 206, 443
PspGI CCWGG 2 cut(s) 916, 976
PspN4I GGNNCC 6 cut(s) 94, 290, 536, 597, 892, 904
PspPI GGNCC 1 cut(s) 289
PsrI GAACNNNNNNTAC 2 cut(s) 85, 117
PstI CTGCAG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 1135
PsyI GACNNNGTC 1 cut(s) 569
RsaI GTAC 4 cut(s) 1174, 1262, 1419, 1428
RsaNI GTAC 4 cut(s) 1173, 1261, 1418, 1427
SalI GTCGAC 2 cut(s) 187, 695
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 4 cut(s) 435, 657, 1254, 1391
SatI GCNGC 3 cut(s) 914, 1022, 1314
Sau3AI GATC 3 cut(s) 244, 1135, 1285
Sau96I GGNCC 1 cut(s) 289
ScaI AGTACT 2 cut(s) 1419, 1428
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 3 cut(s) 407, 918, 978
SduI GDGCHC 1 cut(s) 477
SfaNI GCATC 6 cut(s) 102, 126, 670, 724, 949, 1216
SfcI CTRYAG 2 cut(s) 525, 1448
SfoI GGCGCC 1 cut(s) 597
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 2 cut(s) 140, 251
SmoI CTYRAG 2 cut(s) 140, 251
Sse9I AATT 6 cut(s) 313, 511, 739, 1002, 1219, 1351
SsiI CCGC 4 cut(s) 307, 702, 913, 1313
SspDI GGCGCC 1 cut(s) 595
SspI AATATT 1 cut(s) 613
StyD4I CCNGG 3 cut(s) 405, 916, 976
StyI CCWWGG 3 cut(s) 96, 279, 750
TaaI ACNGT 8 cut(s) 34, 40, 127, 186, 472, 607, 1417, 1443
TaiI ACGT 3 cut(s) 303, 336, 1044
TaqI TCGA 6 cut(s) 174, 188, 219, 696, 732, 1436
TasI AATT 6 cut(s) 313, 511, 739, 1002, 1219, 1351
TatI WGTACW 3 cut(s) 1260, 1417, 1426
TauI GCSGC 2 cut(s) 916, 1316
TfiI GAWTC 3 cut(s) 455, 712, 1276
Tru1I TTAA 4 cut(s) 435, 657, 1254, 1391
Tru9I TTAA 4 cut(s) 435, 657, 1254, 1391
TscAI CASTG 5 cut(s) 39, 45, 610, 712, 1200
TseFI GTSAC 4 cut(s) 34, 301, 397, 1318
TseI GCWGC 1 cut(s) 1021
Tsp45I GTSAC 4 cut(s) 34, 301, 397, 1318
TspDTI ATGAA 5 cut(s) 375, 453, 1233, 1345, 1365
TspGWI ACGGA 2 cut(s) 505, 840
TspRI CASTG 5 cut(s) 39, 45, 610, 712, 1200
Tth111I GACNNNGTC 1 cut(s) 569
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 1002
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 5 cut(s) 188, 492, 696, 933, 1208
XmnI GAANNNNTTC 1 cut(s) 170
ZrmI AGTACT 2 cut(s) 1419, 1428
Zsp2I ATGCAT 1 cut(s) 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.