FvH4_1g28000

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
19817962 .. 19821230
3269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28000.t1

Sequence Viewer

Length: 1461 bp
ATGGAAAGAGGGTATGTGATGATGATGTTGGTATGTGTGGTGATGGTGGTGTTGGGTTGTTGGAGTGGTGATGGTGTTGAAGGGCTTGGTGTGAACTGGGGAACCATGGCCACCCATAAGTTGCCTCCGGACACGGTTGTTCAGTTGCTCAAGGACAATGGCATTCAGAAGGTCAAGCTCTTCGACGCCGAGCAGTCCACCATGAGTGCTCTGGCCGGCACTTCCATCGAGGTCATGGTTGCCATTCCCAATGATCAACTTCAGGCTATGACCAGCTATCCCCGTGCCAAAGAATGGGTTCGAAGGAACGTCACTCGCTACAATTTCAATGGTGGAGTTAACATCAAGTATGTAGCTGTTGGGAATGAGCCTTTCCTCACATCTTACAATGGTTCGTTCCTGAATATCACCTTCCCTGCACTCCAGAACATACAAAACGCCCTTAATGAAGCTGGGGTTGGAGATACTATAAAGGCTACTGTTCCCTTGAATGCTGATGTCTACAACTCACCAGAAACCAATCCCGTCCCATCTGCAGGAACGTTCCGGAGTGATATTAGTCAACTGATGACTGAGATTGTCCAGTTCCTTGACAAAAATAAGGCGCCTTTCACTATAAATATTTACCCCTTCCTAAGTCTATATGGAAATGATGACTTCCCTTTCAATTATGCCTTCTTTGATGGGGATGCAACTCCCATTGTCGACGCCACCACTGGGATTCAGTACACCAATGTTTTTGATGCTAATTTTGATACCTTGGTTTCTTCATTGAAAGCAGTCGGATACGGGGATATGGCCATTGTAGTAGGGGAAGTCGGATGGCCAACAGACGGGGACAAGAATGCCAATGTTGGTAATGCTTACAGATTTTATAATGGGCTTCTAGCAAGACTTGCAGCCAATAAAGGCACCCCTCTGCGGCCTGGTTTTATAGAAATATACTTGTTTGGACTTATTGATGAGGATGCAAAGAGCATTGCCCCTGGAAGCTTTGAGCGTCATTGGGGAATTTTTAGTTATGATGGGCAGCCGAAGTTTCCAATTGATGTTTCTGGTCAGGGTCAAAACAAGTTACTAATGGGTGCAAAGAATGTGCAATATCTTGAAAAGAAATGGTGTATGTTCAATCCAAACGCCAAAGATCTGAGCAAACTTGCAGACAACATAAACTACGCTTGCACATTTGCAGATTGCACAGCACTTGAATACGGGTCTTCTTGCAACATTTTGGATGCTAATGGGAATGCGTCATACGCATTTAATATGTACTATCAGGTTCAGAATCAGGATGATCTATCCTGCAACTTTGAGGGTTTGGCGACCGTGACAACACAGAACATCTCACAAGGGACTTGCAATTTCATTATTCAGATAGCTTCTTCATCCACATTTTCTTTAAGACCCTCCCCCCTGGTAGGCATAGTACTCGGTGTACTCTTCTCAATACTGTTGCTATAG

Protein Analysis

487

Amino Acids

53.12

Weight (kDa)

4.65

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 350 4.5e-65 Glycosyl hydrolases family 17
X8 PF07983 372 - 442 6.6e-16 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
AccB1I GGYRCC 2 cut(s) 604, 911
AccB7I CCANNNNNTGG 1 cut(s) 294
AccI GTMKAC 2 cut(s) 501, 705
AccIII TCCGGA 2 cut(s) 127, 546
AciI CCGC 1 cut(s) 922
AclI AACGTT 1 cut(s) 542
AcoI YGGCCR 4 cut(s) 108, 213, 798, 824
AcsI RAATTY 1 cut(s) 1011
AcuI CTGAAG 1 cut(s) 245
AcyI GRCGYC 3 cut(s) 186, 605, 708
AfaI GTAC 4 cut(s) 728, 1271, 1428, 1437
AfiI CCNNNNNNNGG 6 cut(s) 294, 536, 717, 833, 921, 1418
AgsI TTSAA 8 cut(s) 80, 328, 490, 667, 775, 1109, 1129, 1208
AjnI CCWGG 3 cut(s) 925, 985, 1413
AjuI GAANNNNNNNTTGG 4 cut(s) 441, 473, 1036, 1068
AluBI AGCT 6 cut(s) 178, 276, 356, 452, 993, 1379
AluI AGCT 6 cut(s) 178, 276, 356, 452, 993, 1379
Alw21I GWGCWC 1 cut(s) 211
Aor13HI TCCGGA 2 cut(s) 127, 546
AoxI GGCC 5 cut(s) 108, 213, 798, 824, 923
ApeKI GCWGC 2 cut(s) 899, 1030
ApoI RAATTY 1 cut(s) 1011
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 607
AsuHPI GGTGA 4 cut(s) 52, 80, 400, 501
AsuII TTCGAA 1 cut(s) 301
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BalI TGGCCA 3 cut(s) 110, 800, 826
BanI GGYRCC 2 cut(s) 604, 911
BbsI GAAGAC 1 cut(s) 1209
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 2 cut(s) 911, 1042
BccI CCATC 7 cut(s) 37, 65, 233, 538, 677, 816, 1019
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 1411, 1445
BciT130I CCWGG 3 cut(s) 927, 987, 1415
BciVI GTATCC 1 cut(s) 779
BclI TGATCA 1 cut(s) 253
BfaI CTAG 1 cut(s) 887
BfmI CTRYAG 2 cut(s) 534, 1457
BfoI RGCGCY 1 cut(s) 608
BfuI GTATCC 1 cut(s) 779
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 3 cut(s) 900, 923, 1031
BlsI GCNGC 3 cut(s) 901, 924, 1032
BmcAI AGTACT 1 cut(s) 1428
Bme1390I CCNGG 3 cut(s) 927, 987, 1415
BmiI GGNNCC 3 cut(s) 103, 606, 913
BmrFI CCNGG 3 cut(s) 927, 987, 1415
BmrI ACTGGG 2 cut(s) 106, 726
BmsI GCATC 4 cut(s) 679, 733, 958, 1225
BmuI ACTGGG 2 cut(s) 106, 726
BpiI GAAGAC 1 cut(s) 1209
BpmI CTGGAG 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 134
BsaHI GRCGYC 3 cut(s) 186, 605, 708
BsaJI CCNNGG 4 cut(s) 105, 759, 985, 1413
BsaWI WCCGGW 2 cut(s) 127, 546
Bsc4I CCNNNNNNNGG 6 cut(s) 294, 536, 717, 833, 921, 1418
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 3 cut(s) 101, 583, 721
Bse3DI GCAATG 1 cut(s) 978
BseAI TCCGGA 2 cut(s) 127, 546
BseBI CCWGG 3 cut(s) 927, 987, 1415
BseDI CCNNGG 4 cut(s) 105, 759, 985, 1413
BseGI GGATG 6 cut(s) 694, 827, 973, 1240, 1297, 1385
BseLI CCNNNNNNNGG 6 cut(s) 294, 536, 717, 833, 921, 1418
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 2 cut(s) 564, 1139
BseNI ACTGG 3 cut(s) 101, 583, 721
BseXI GCAGC 2 cut(s) 911, 1042
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 402
Bsh1285I CGRYCG 1 cut(s) 1326
BshFI GGCC 5 cut(s) 110, 215, 800, 826, 925
BshNI GGYRCC 2 cut(s) 604, 911
BsiEI CGRYCG 1 cut(s) 1326
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 3 cut(s) 128, 216, 547
BslFI GGGAC 3 cut(s) 512, 851, 1366
BslI CCNNNNNNNGG 6 cut(s) 294, 536, 717, 833, 921, 1418
BsmFI GGGAC 3 cut(s) 512, 851, 1366
BsmI GAATGC 4 cut(s) 162, 496, 850, 1252
BsnI GGCC 5 cut(s) 110, 215, 800, 826, 925
Bsp119I TTCGAA 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 211
Bsp13I TCCGGA 2 cut(s) 127, 546
Bsp143I GATC 3 cut(s) 253, 1144, 1294
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 1 cut(s) 922
BspANI GGCC 5 cut(s) 110, 215, 800, 826, 925
BspCNI CTCAG 2 cut(s) 565, 1140
BspEI TCCGGA 2 cut(s) 127, 546
BspLI GGNNCC 3 cut(s) 103, 606, 913
BspMAI CTGCAG 1 cut(s) 538
BspQI GCTCTTC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 301
BspT107I GGYRCC 2 cut(s) 604, 911
BsrDI GCAATG 1 cut(s) 978
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 3 cut(s) 101, 583, 721
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 4 cut(s) 105, 759, 985, 1413
BssMI GATC 3 cut(s) 253, 1144, 1294
BssNI GRCGYC 3 cut(s) 186, 605, 708
BssT1I CCWWGG 2 cut(s) 105, 759
Bst2UI CCWGG 3 cut(s) 927, 987, 1415
Bst4CI ACNGT 4 cut(s) 136, 481, 1327, 1452
Bst6I CTCTTC 2 cut(s) 185, 1445
BstACI GRCGYC 3 cut(s) 186, 605, 708
BstAPI GCANNNNNTGC 1 cut(s) 896
BstBI TTCGAA 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 217, 1180
BstDEI CTNAG 3 cut(s) 573, 635, 1148
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 6 cut(s) 694, 827, 973, 1240, 1297, 1385
BstH2I RGCGCY 1 cut(s) 608
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 3 cut(s) 256, 1147, 1297
BstMBI GATC 3 cut(s) 253, 1144, 1294
BstMCI CGRYCG 1 cut(s) 1326
BstMWI GCNNNNNNNGC 2 cut(s) 896, 1256
BstNI CCWGG 3 cut(s) 927, 987, 1415
BstSCI CCNGG 3 cut(s) 925, 985, 1413
BstSFI CTRYAG 2 cut(s) 534, 1457
BstV1I GCAGC 2 cut(s) 911, 1042
BstV2I GAAGAC 1 cut(s) 1209
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
BsuI GTATCC 1 cut(s) 779
BsuRI GGCC 5 cut(s) 110, 215, 800, 826, 925
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 6 cut(s) 694, 827, 973, 1240, 1297, 1385
BtsIMutI CAGTG 1 cut(s) 714
Cac8I GCNNGC 2 cut(s) 217, 1180
CfoI GCGC 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 215
CseI GACGC 4 cut(s) 194, 716, 989, 1239
Csp6I GTAC 4 cut(s) 727, 1270, 1427, 1436
CviAII CATG 3 cut(s) 106, 202, 235
CviQI GTAC 4 cut(s) 727, 1270, 1427, 1436
DdeI CTNAG 3 cut(s) 573, 635, 1148
DinI GGCGCC 1 cut(s) 606
DpnI GATC 3 cut(s) 255, 1146, 1296
DpnII GATC 3 cut(s) 253, 1144, 1294
EaeI YGGCCR 4 cut(s) 108, 213, 798, 824
Eam1104I CTCTTC 2 cut(s) 185, 1445
EarI CTCTTC 2 cut(s) 185, 1445
Eco130I CCWWGG 2 cut(s) 105, 759
Eco57I CTGAAG 1 cut(s) 245
EcoRII CCWGG 3 cut(s) 925, 985, 1413
EcoT14I CCWWGG 2 cut(s) 105, 759
EgeI GGCGCC 1 cut(s) 606
EheI GGCGCC 1 cut(s) 606
ErhI CCWWGG 2 cut(s) 105, 759
FaeI CATG 3 cut(s) 109, 205, 238
FaqI GGGAC 3 cut(s) 512, 851, 1366
FatI CATG 3 cut(s) 105, 201, 234
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 2 cut(s) 501, 705
Fnu4HI GCNGC 3 cut(s) 900, 923, 1031
FokI GGATG 6 cut(s) 701, 834, 980, 1247, 1304, 1372
Fsp4HI GCNGC 3 cut(s) 900, 923, 1031
FspBI CTAG 1 cut(s) 887
GlaI GCGC 1 cut(s) 606
GluI GCNGC 3 cut(s) 900, 923, 1031
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 1 cut(s) 608
HaeIII GGCC 5 cut(s) 110, 215, 800, 826, 925
HapII CCGG 3 cut(s) 128, 216, 547
HgaI GACGC 4 cut(s) 194, 716, 989, 1239
HhaI GCGC 1 cut(s) 607
Hin1I GRCGYC 3 cut(s) 186, 605, 708
Hin1II CATG 3 cut(s) 109, 205, 238
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HincII GTYRAC 3 cut(s) 340, 563, 706
HindII GTYRAC 3 cut(s) 340, 563, 706
HindIII AAGCTT 1 cut(s) 991
HinfI GANTC 2 cut(s) 721, 1285
HpaI GTTAAC 1 cut(s) 340
HpaII CCGG 3 cut(s) 128, 216, 547
HphI GGTGA 4 cut(s) 52, 80, 400, 501
Hpy166II GTNNAC 8 cut(s) 94, 198, 340, 502, 563, 706, 729, 1436
Hpy188I TCNGA 6 cut(s) 168, 785, 821, 1149, 1284, 1374
Hpy188III TCNNGA 6 cut(s) 128, 400, 424, 547, 1106, 1289
Hpy8I GTNNAC 8 cut(s) 94, 198, 340, 502, 563, 706, 729, 1436
Hpy99I CGWCG 2 cut(s) 188, 710
HpyAV CCTTC 6 cut(s) 74, 163, 297, 421, 640, 685
HpyCH4III ACNGT 4 cut(s) 136, 481, 1327, 1452
HpyCH4IV ACGT 2 cut(s) 309, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 896, 1256
HpyF3I CTNAG 3 cut(s) 573, 635, 1148
HpySE526I ACGT 2 cut(s) 309, 542
Hsp92I GRCGYC 3 cut(s) 186, 605, 708
Hsp92II CATG 3 cut(s) 109, 205, 238
HspAI GCGC 1 cut(s) 605
KasI GGCGCC 1 cut(s) 604
Kpn2I TCCGGA 2 cut(s) 127, 546
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 3 cut(s) 253, 1144, 1294
LguI GCTCTTC 1 cut(s) 185
Lsp1109I GCAGC 2 cut(s) 911, 1042
LweI GCATC 4 cut(s) 679, 733, 958, 1225
MaeI CTAG 1 cut(s) 887
MaeII ACGT 2 cut(s) 309, 542
MaeIII GTNAC 3 cut(s) 310, 1074, 1327
MalI GATC 3 cut(s) 255, 1146, 1296
MboI GATC 3 cut(s) 253, 1144, 1294
MboII GAAGA 5 cut(s) 172, 759, 1209, 1374, 1432
MfeI CAATTG 1 cut(s) 1044
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 1 cut(s) 211
MlsI TGGCCA 3 cut(s) 110, 800, 826
MluCI AATT 6 cut(s) 322, 667, 748, 1011, 1044, 1360
MluNI TGGCCA 3 cut(s) 110, 800, 826
Mly113I GGCGCC 1 cut(s) 605
MmeI TCCRAC 4 cut(s) 41, 439, 763, 799
MnlI CCTC 7 cut(s) 135, 223, 386, 927, 958, 1306, 1417
Mox20I TGGCCA 3 cut(s) 110, 800, 826
MroI TCCGGA 2 cut(s) 127, 546
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 297
MscI TGGCCA 3 cut(s) 110, 800, 826
MseI TTAA 4 cut(s) 339, 444, 1263, 1400
Msp20I TGGCCA 3 cut(s) 110, 800, 826
MspI CCGG 3 cut(s) 128, 216, 547
MspR9I CCNGG 3 cut(s) 927, 987, 1415
MunI CAATTG 1 cut(s) 1044
Mva1269I GAATGC 4 cut(s) 162, 496, 850, 1252
MvaI CCWGG 3 cut(s) 927, 987, 1415
MwoI GCNNNNNNNGC 2 cut(s) 896, 1256
NaeI GCCGGC 1 cut(s) 217
NarI GGCGCC 1 cut(s) 605
NcoI CCATGG 1 cut(s) 105
NdeII GATC 3 cut(s) 253, 1144, 1294
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 3 cut(s) 109, 205, 238
NlaIV GGNNCC 3 cut(s) 103, 606, 913
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 310, 1327
NspV TTCGAA 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 185
PctI GAATGC 4 cut(s) 162, 496, 850, 1252
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 721, 1285
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 3 cut(s) 901, 924, 1032
PluTI GGCGCC 1 cut(s) 608
PsiI TTATAA 1 cut(s) 876
Psp1406I AACGTT 1 cut(s) 542
Psp6I CCWGG 3 cut(s) 925, 985, 1413
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 3 cut(s) 925, 985, 1413
PspN4I GGNNCC 3 cut(s) 103, 606, 913
PstI CTGCAG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 1144
RsaI GTAC 4 cut(s) 728, 1271, 1428, 1437
RsaNI GTAC 4 cut(s) 727, 1270, 1427, 1436
SalI GTCGAC 1 cut(s) 704
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 4 cut(s) 339, 444, 1263, 1400
SatI GCNGC 3 cut(s) 900, 923, 1031
Sau3AI GATC 3 cut(s) 253, 1144, 1294
ScaI AGTACT 1 cut(s) 1428
ScrFI CCNGG 3 cut(s) 927, 987, 1415
SduI GDGCHC 1 cut(s) 211
SfaNI GCATC 4 cut(s) 679, 733, 958, 1225
SfcI CTRYAG 2 cut(s) 534, 1457
SfoI GGCGCC 1 cut(s) 606
SfuI TTCGAA 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 6 cut(s) 322, 667, 748, 1011, 1044, 1360
SsiI CCGC 1 cut(s) 922
SspDI GGCGCC 1 cut(s) 604
SspI AATATT 1 cut(s) 622
SspMI CTAG 1 cut(s) 887
StyD4I CCNGG 3 cut(s) 925, 985, 1413
StyI CCWWGG 2 cut(s) 105, 759
TaaI ACNGT 4 cut(s) 136, 481, 1327, 1452
TaiI ACGT 2 cut(s) 312, 545
TaqI TCGA 4 cut(s) 183, 228, 301, 705
TasI AATT 6 cut(s) 322, 667, 748, 1011, 1044, 1360
TatI WGTACW 4 cut(s) 726, 1269, 1426, 1435
TauI GCSGC 1 cut(s) 925
TfiI GAWTC 2 cut(s) 721, 1285
Tru1I TTAA 4 cut(s) 339, 444, 1263, 1400
Tru9I TTAA 4 cut(s) 339, 444, 1263, 1400
TscAI CASTG 1 cut(s) 721
TseFI GTSAC 2 cut(s) 310, 1327
TseI GCWGC 2 cut(s) 899, 1030
Tsp45I GTSAC 2 cut(s) 310, 1327
TspDTI ATGAA 4 cut(s) 462, 759, 1354, 1374
TspRI CASTG 1 cut(s) 721
Van91I CCANNNNNTGG 1 cut(s) 294
XapI RAATTY 1 cut(s) 1011
XcmI CCANNNNNNNNNTGG 2 cut(s) 208, 232
XmiI GTMKAC 2 cut(s) 501, 705
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 1 cut(s) 887
ZrmI AGTACT 1 cut(s) 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.