Rroxscaffold_6G00388070

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
660875 .. 663560
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388070.1

Sequence Viewer

Length: 1467 bp
ATGGAAAGGGGATATTTGATGATGTTGGCAACAGTGACAGTGACAGTCGTGGTTGTGTTGGGCTGTTGTTGTTGTGGTGGTGTTGAAGGGCTTGGTGTGAACTGGGGAACCATGGCTACGCATAAGATGCCTCCGGACACCGTTGTCCAGATGCTCAAGGACAATGGCATTCAGAAGGTGAAGCTCTTCGACGCCGAACAGTCGACCATGAGTGCTTTGGCTGGGACTAACATCGAGGTCATGGTTGCCATTCCCAATGATCAACTTGAGGCTATGACCAACTATGCCCGTGCCAAGGAATGGGTCCGGAGGAACGTGACCCGCTACAATTTCAATGGAGGAGTTAACGTCAAGTATGTAGCTGTTGGGAATGAGCCTTTTCTCACATCGTACAATGGTTCATTCCTGAATGTCACCTTGCCGGCACTTCAGAACATTCAAAACGCCCTTAATGAAGCTGGGGTTGGAGATTCCATAAAGGCTACTGTGCCCTTGAATGCTGATGTCTACAACTCACCAGAGTCCAATGCCGTCCCATCTGCAGGAAGGTTCCGGAGTGATATCAGTCAACTGATGACTGACATTGTCCAGTTCCTTGCCAAAAACAAGGCGCCTTTCACTGTAAATATTTACCCTTTCCTAAGTCTATATGGAAATGATGGCTTCCCTTTTAACTTTGCCTTCTTTGATGGGGATGCAAATGCCCTTGTCGACACCGCCACTGGGATTCAATATACCAATGTTTTCGATGCTAATTTTGATACCTTGGTTTCTTCCTTGAAAGCAATCGGATTTGGAGATATGACCATTATAGTAGGGGAGGTGGGATGGCCGACAGATGGAGACAAGAATGCCAATGCTGGTAATGCTTACAGATTTTATAACGGGCTTTTTACAAAACTTGGAGCCAATAGAGGCACCCCTCTGCGGCCTGGATATATAGAAGTCTACTTGTTTGGACTTATTGATGAGGATGCAAAGAGCATTGCCCCTGGAAGTTTTGAGCGTCATTGGGGAATTTTCCGTTATGATGGGCAGCCTAAGTTTGCAGTTGACGTTACTGGTCAGGGTCAAAACAAGTTCCTAATGGGTGCAAAGAATGTGCAATATCTTGAAAAGAAATGGTGTGCGTTCAATCCAAACGCCAAAGATCTTAGCAAACTTGCAGATAACATAAACTATGCTTGTACCTTTGCAGATTGCACACCACTGGAATACGGGTCTACTTGCAACAATTTAGATGCTAATGGGAATGCTTCATATGCGTTTAATATGTACTATCAGGTTCAGAATCAGGATGATCTAGCCTGCAACTTTCAGGGTATGGCGGCCGTGACAACACAGAATATCTCACAAGGGACTTGCAATTTCATTATTCAGATAGCTTCTTCATCTACATTTTCTTTAAGACCCTCTCTACTGGTAGGCACAGTACTCATAGTACTCTTCTCGATACTGTTGCTATAG

Protein Analysis

488

Amino Acids

53.16

Weight (kDa)

4.91

Isoelectric Point (pI)

29.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 31 - 352 1.6e-65 Glycosyl hydrolases family 17
X8 PF07983 374 - 443 4e-16 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 882
AasI GACNNNNNNGTC 1 cut(s) 143
AccB1I GGYRCC 2 cut(s) 610, 917
AccB7I CCANNNNNTGG 1 cut(s) 300
AccI GTMKAC 5 cut(s) 203, 507, 711, 948, 1223
AccIII TCCGGA 3 cut(s) 133, 306, 552
AciI CCGC 4 cut(s) 322, 717, 928, 1328
AcoI YGGCCR 2 cut(s) 830, 1329
AcsI RAATTY 1 cut(s) 1017
AcuI CTGAAG 1 cut(s) 413
AcyI GRCGYC 2 cut(s) 192, 611
AfaI GTAC 5 cut(s) 392, 1189, 1277, 1434, 1443
AfiI CCNNNNNNNGG 6 cut(s) 295, 300, 542, 723, 839, 927
AgsI TTSAA 8 cut(s) 86, 334, 440, 496, 731, 781, 1115, 1135
AjnI CCWGG 2 cut(s) 931, 991
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 4 cut(s) 184, 362, 458, 1385
AluI AGCT 4 cut(s) 184, 362, 458, 1385
Alw26I GTCTC 1 cut(s) 837
Aor13HI TCCGGA 3 cut(s) 133, 306, 552
AoxI GGCC 3 cut(s) 830, 929, 1329
ApeKI GCWGC 1 cut(s) 1036
ApoI RAATTY 1 cut(s) 1017
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 613
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 190, 406, 507
AvaII GGWCC 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 492
BaeI ACNNNNGTAYC 2 cut(s) 753, 786
BanI GGYRCC 2 cut(s) 610, 917
BbvI GCAGC 1 cut(s) 1048
BccI CCATC 6 cut(s) 544, 653, 683, 822, 833, 1025
BceAI ACGGC 2 cut(s) 515, 1316
BcgI CGANNNNNNTGC 1 cut(s) 1441
BciT130I CCWGG 2 cut(s) 933, 993
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 837
BfaI CTAG 1 cut(s) 1304
BfmI CTRYAG 2 cut(s) 540, 1463
BfoI RGCGCY 1 cut(s) 614
BglII AGATCT 1 cut(s) 1150
BisI GCNGC 3 cut(s) 929, 1037, 1329
BlsI GCNGC 3 cut(s) 930, 1038, 1330
BmcAI AGTACT 2 cut(s) 1434, 1443
Bme1390I CCNGG 2 cut(s) 933, 993
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 6 cut(s) 109, 305, 551, 612, 907, 919
BmrFI CCNGG 2 cut(s) 933, 993
BmrI ACTGGG 2 cut(s) 112, 732
BmsI GCATC 6 cut(s) 117, 141, 685, 739, 964, 1231
BmuI ACTGGG 2 cut(s) 112, 732
BpuEI CTTGAG 2 cut(s) 140, 287
BsaHI GRCGYC 2 cut(s) 192, 611
BsaJI CCNNGG 4 cut(s) 111, 294, 765, 991
BsaWI WCCGGW 3 cut(s) 133, 306, 552
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 6 cut(s) 295, 300, 542, 723, 839, 927
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 6 cut(s) 107, 589, 727, 1066, 1215, 1425
Bse3DI GCAATG 1 cut(s) 984
BseAI TCCGGA 3 cut(s) 133, 306, 552
BseBI CCWGG 2 cut(s) 933, 993
BseDI CCNNGG 4 cut(s) 111, 294, 765, 991
BseGI GGATG 4 cut(s) 700, 833, 979, 1303
BseLI CCNNNNNNNGG 6 cut(s) 295, 300, 542, 723, 839, 927
BseMI GCAATG 1 cut(s) 984
BseNI ACTGG 6 cut(s) 107, 589, 727, 1066, 1215, 1425
BseRI GAGGAG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 492
BseX3I CGGCCG 1 cut(s) 1329
BseXI GCAGC 1 cut(s) 1048
BseYI CCCAGC 2 cut(s) 221, 458
Bsh1285I CGRYCG 1 cut(s) 1332
BshFI GGCC 3 cut(s) 832, 931, 1331
BshNI GGYRCC 2 cut(s) 610, 917
BsiEI CGRYCG 1 cut(s) 1332
BsiSI CCGG 4 cut(s) 134, 307, 422, 553
BslFI GGGAC 3 cut(s) 238, 518, 1372
BslI CCNNNNNNNGG 6 cut(s) 295, 300, 542, 723, 839, 927
BsmAI GTCTC 1 cut(s) 837
BsmFI GGGAC 3 cut(s) 238, 518, 1372
BsmI GAATGC 4 cut(s) 168, 502, 856, 1258
BsnI GGCC 3 cut(s) 832, 931, 1331
Bsp1286I GDGCHC 1 cut(s) 492
Bsp13I TCCGGA 3 cut(s) 133, 306, 552
Bsp143I GATC 3 cut(s) 259, 1150, 1300
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 4 cut(s) 322, 717, 928, 1328
BspANI GGCC 3 cut(s) 832, 931, 1331
BspEI TCCGGA 3 cut(s) 133, 306, 552
BspLI GGNNCC 6 cut(s) 109, 305, 551, 612, 907, 919
BspMAI CTGCAG 1 cut(s) 544
BspQI GCTCTTC 1 cut(s) 191
BspT107I GGYRCC 2 cut(s) 610, 917
BsrDI GCAATG 1 cut(s) 984
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 6 cut(s) 107, 589, 727, 1066, 1215, 1425
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 4 cut(s) 111, 294, 765, 991
BssMI GATC 3 cut(s) 259, 1150, 1300
BssNI GRCGYC 2 cut(s) 192, 611
BssT1I CCWWGG 3 cut(s) 111, 294, 765
Bst2UI CCWGG 2 cut(s) 933, 993
Bst4CI ACNGT 9 cut(s) 34, 40, 46, 142, 201, 487, 622, 1432, 1458
Bst6I CTCTTC 2 cut(s) 191, 1451
BstACI GRCGYC 2 cut(s) 192, 611
BstAPI GCANNNNNTGC 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 423, 1309
BstDEI CTNAG 3 cut(s) 641, 1041, 1154
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 4 cut(s) 700, 833, 979, 1303
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 3 cut(s) 262, 1153, 1303
BstMAI GTCTC 1 cut(s) 837
BstMBI GATC 3 cut(s) 259, 1150, 1300
BstMCI CGRYCG 1 cut(s) 1332
BstMWI GCNNNNNNNGC 3 cut(s) 127, 866, 1262
BstNI CCWGG 2 cut(s) 933, 993
BstSCI CCNGG 2 cut(s) 931, 991
BstSFI CTRYAG 2 cut(s) 540, 1463
BstSLI GKGCMC 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 1048
BstX2I RGATCY 1 cut(s) 1150
BstYI RGATCY 1 cut(s) 1150
BstZI CGGCCG 1 cut(s) 1329
BsuRI GGCC 3 cut(s) 832, 931, 1331
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 4 cut(s) 700, 833, 979, 1303
BtsIMutI CAGTG 5 cut(s) 39, 45, 618, 720, 1208
Cac8I GCNNGC 2 cut(s) 423, 1309
CfoI GCGC 1 cut(s) 613
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 304
CseI GACGC 2 cut(s) 200, 995
Csp6I GTAC 5 cut(s) 391, 1188, 1276, 1433, 1442
CviAII CATG 3 cut(s) 112, 208, 241
CviQI GTAC 5 cut(s) 391, 1188, 1276, 1433, 1442
DdeI CTNAG 3 cut(s) 641, 1041, 1154
DinI GGCGCC 1 cut(s) 612
DpnI GATC 3 cut(s) 261, 1152, 1302
DpnII GATC 3 cut(s) 259, 1150, 1300
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 2 cut(s) 830, 1329
EagI CGGCCG 1 cut(s) 1329
Eam1104I CTCTTC 2 cut(s) 191, 1451
EarI CTCTTC 2 cut(s) 191, 1451
EclXI CGGCCG 1 cut(s) 1329
Eco130I CCWWGG 3 cut(s) 111, 294, 765
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 304
Eco52I CGGCCG 1 cut(s) 1329
Eco57I CTGAAG 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 931, 991
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 3 cut(s) 111, 294, 765
EgeI GGCGCC 1 cut(s) 612
EheI GGCGCC 1 cut(s) 612
ErhI CCWWGG 3 cut(s) 111, 294, 765
FaeI CATG 3 cut(s) 115, 211, 244
FaqI GGGAC 3 cut(s) 238, 518, 1372
FatI CATG 3 cut(s) 111, 207, 240
FauI CCCGC 1 cut(s) 329
FauNDI CATATG 1 cut(s) 1261
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 5 cut(s) 203, 507, 711, 948, 1223
Fnu4HI GCNGC 3 cut(s) 929, 1037, 1329
FokI GGATG 4 cut(s) 707, 840, 986, 1310
Fsp4HI GCNGC 3 cut(s) 929, 1037, 1329
FspBI CTAG 1 cut(s) 1304
GlaI GCGC 1 cut(s) 612
GluI GCNGC 3 cut(s) 929, 1037, 1329
GsaI CCCAGC 2 cut(s) 225, 462
HaeII RGCGCY 1 cut(s) 614
HaeIII GGCC 3 cut(s) 832, 931, 1331
HapII CCGG 4 cut(s) 134, 307, 422, 553
HgaI GACGC 2 cut(s) 200, 995
HhaI GCGC 1 cut(s) 613
Hin1I GRCGYC 2 cut(s) 192, 611
Hin1II CATG 3 cut(s) 115, 211, 244
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HincII GTYRAC 5 cut(s) 204, 346, 569, 712, 1054
HindII GTYRAC 5 cut(s) 204, 346, 569, 712, 1054
HinfI GANTC 4 cut(s) 470, 521, 727, 1291
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 4 cut(s) 134, 307, 422, 553
HphI GGTGA 3 cut(s) 190, 406, 507
Hpy166II GTNNAC 9 cut(s) 100, 204, 346, 508, 569, 712, 949, 1054, 1224
Hpy188I TCNGA 5 cut(s) 174, 432, 791, 1290, 1380
Hpy188III TCNNGA 8 cut(s) 134, 148, 307, 406, 553, 1112, 1295, 1450
Hpy8I GTNNAC 9 cut(s) 100, 204, 346, 508, 569, 712, 949, 1054, 1224
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 4 cut(s) 80, 169, 540, 691
HpyCH4III ACNGT 9 cut(s) 34, 40, 46, 142, 201, 487, 622, 1432, 1458
HpyCH4IV ACGT 3 cut(s) 315, 348, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 866, 1262
HpyF3I CTNAG 3 cut(s) 641, 1041, 1154
HpySE526I ACGT 3 cut(s) 315, 348, 1056
Hsp92I GRCGYC 2 cut(s) 192, 611
Hsp92II CATG 3 cut(s) 115, 211, 244
HspAI GCGC 1 cut(s) 611
KasI GGCGCC 1 cut(s) 610
Kpn2I TCCGGA 3 cut(s) 133, 306, 552
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
Ksp22I TGATCA 1 cut(s) 259
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 259, 1150, 1300
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 905
Lsp1109I GCAGC 1 cut(s) 1048
LweI GCATC 6 cut(s) 117, 141, 685, 739, 964, 1231
MaeI CTAG 1 cut(s) 1304
MaeII ACGT 3 cut(s) 315, 348, 1056
MaeIII GTNAC 6 cut(s) 34, 40, 316, 412, 1057, 1333
MalI GATC 3 cut(s) 261, 1152, 1302
MboI GATC 3 cut(s) 259, 1150, 1300
MboII GAAGA 4 cut(s) 178, 765, 1380, 1438
MflI RGATCY 1 cut(s) 1150
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 5 cut(s) 328, 754, 1017, 1234, 1366
Mly113I GGCGCC 1 cut(s) 611
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 445
MroI TCCGGA 3 cut(s) 133, 306, 552
MroNI GCCGGC 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 5 cut(s) 345, 450, 672, 1269, 1406
MspI CCGG 4 cut(s) 134, 307, 422, 553
MspR9I CCNGG 2 cut(s) 933, 993
Mva1269I GAATGC 4 cut(s) 168, 502, 856, 1258
MvaI CCWGG 2 cut(s) 933, 993
MwoI GCNNNNNNNGC 3 cut(s) 127, 866, 1262
NaeI GCCGGC 1 cut(s) 423
NarI GGCGCC 1 cut(s) 611
NcoI CCATGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 1261
NdeII GATC 3 cut(s) 259, 1150, 1300
NgoMIV GCCGGC 1 cut(s) 421
NlaIII CATG 3 cut(s) 115, 211, 244
NlaIV GGNNCC 6 cut(s) 109, 305, 551, 612, 907, 919
NmuCI GTSAC 5 cut(s) 34, 40, 316, 412, 1333
PciSI GCTCTTC 1 cut(s) 191
PctI GAATGC 4 cut(s) 168, 502, 856, 1258
PdiI GCCGGC 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 3 cut(s) 470, 727, 1291
PflFI GACNNNGTC 1 cut(s) 584
PflMI CCANNNNNTGG 1 cut(s) 300
PkrI GCNGC 3 cut(s) 930, 1038, 1330
PleI GAGTC 1 cut(s) 529
PluTI GGCGCC 1 cut(s) 614
PpsI GAGTC 1 cut(s) 529
PsiI TTATAA 1 cut(s) 882
Psp6I CCWGG 2 cut(s) 931, 991
PspFI CCCAGC 2 cut(s) 221, 458
PspGI CCWGG 2 cut(s) 931, 991
PspN4I GGNNCC 6 cut(s) 109, 305, 551, 612, 907, 919
PspPI GGNCC 1 cut(s) 304
PsrI GAACNNNNNNTAC 2 cut(s) 100, 132
PstI CTGCAG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 1150
PsyI GACNNNGTC 1 cut(s) 584
RsaI GTAC 5 cut(s) 392, 1189, 1277, 1434, 1443
RsaNI GTAC 5 cut(s) 391, 1188, 1276, 1433, 1442
SalI GTCGAC 2 cut(s) 202, 710
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 5 cut(s) 345, 450, 672, 1269, 1406
SatI GCNGC 3 cut(s) 929, 1037, 1329
Sau3AI GATC 3 cut(s) 259, 1150, 1300
Sau96I GGNCC 1 cut(s) 304
ScaI AGTACT 2 cut(s) 1434, 1443
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 933, 993
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 6 cut(s) 117, 141, 685, 739, 964, 1231
SfcI CTRYAG 2 cut(s) 540, 1463
SfoI GGCGCC 1 cut(s) 612
SinI GGWCC 1 cut(s) 304
SmlI CTYRAG 2 cut(s) 155, 266
SmoI CTYRAG 2 cut(s) 155, 266
Sse9I AATT 5 cut(s) 328, 754, 1017, 1234, 1366
SsiI CCGC 4 cut(s) 322, 717, 928, 1328
SspDI GGCGCC 1 cut(s) 610
SspI AATATT 1 cut(s) 628
SspMI CTAG 1 cut(s) 1304
StyD4I CCNGG 2 cut(s) 931, 991
StyI CCWWGG 3 cut(s) 111, 294, 765
TaaI ACNGT 9 cut(s) 34, 40, 46, 142, 201, 487, 622, 1432, 1458
TaiI ACGT 3 cut(s) 318, 351, 1059
TaqI TCGA 6 cut(s) 189, 203, 234, 711, 747, 1451
TasI AATT 5 cut(s) 328, 754, 1017, 1234, 1366
TatI WGTACW 3 cut(s) 1275, 1432, 1441
TauI GCSGC 2 cut(s) 931, 1331
TfiI GAWTC 3 cut(s) 470, 727, 1291
Tru1I TTAA 5 cut(s) 345, 450, 672, 1269, 1406
Tru9I TTAA 5 cut(s) 345, 450, 672, 1269, 1406
TscAI CASTG 5 cut(s) 39, 45, 625, 727, 1215
TseFI GTSAC 5 cut(s) 34, 40, 316, 412, 1333
TseI GCWGC 1 cut(s) 1036
Tsp45I GTSAC 5 cut(s) 34, 40, 316, 412, 1333
TspDTI ATGAA 5 cut(s) 390, 468, 1248, 1360, 1380
TspGWI ACGGA 1 cut(s) 1013
TspRI CASTG 5 cut(s) 39, 45, 625, 727, 1215
Tth111I GACNNNGTC 1 cut(s) 584
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 1 cut(s) 1017
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmiI GTMKAC 5 cut(s) 203, 507, 711, 948, 1223
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 1 cut(s) 1304
ZrmI AGTACT 2 cut(s) 1434, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.