Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007056

Physical Location & Seq

Genomic Coordinates Forward (+)

29941915 .. 29944200

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0292800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGAAGCATATTAGCATGTTCATTGGATCCCCAAGTACCGTTCCTTCCCTCGGTCGAAGTTTCAGTGAAGGCTTTACTTGGTATATCATCAGGCATCAGCAGCTCTACCTGCAGCTCCAAGTGCATCAATGCGAATTTTATTCCGTGGACATCATCCATAGTGAGTTGGAACTGCAAAAAGAGATCTGGTTTGGAGGGATGATCTCAGCATATGAAGACCAATGCTGTGATAAGGGTTCTCTCATGCAATGTAATTTGGAATCAAGGAAAGAATGGCATTCCTGTTTAGAGGTCATTAATGTAAGCATCATTGAGCCATTGAAGCAGGCTCAAGGCGTTTCTTGGCTGATATACCTTATTTATAATGTTCAGAGTCCTTTAATCATGGAGTATGAAGCTCTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

136

Amino Acids

15.81

Weight (kDa)

5.26

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64760 AT1G64760 AT2G19440 AT2G19440 AT3G04010 AT5G18220
fragaria_vesca	FvH4_1g28000
malus_domestica	MD12G1002300.v1.1 MD14G1001800.v1.1
prunus_persica	Prupe.7G002200_v2.0.a1
pyrus_communis	pycom12g00200 pycom49g00140
rosa_chinensis	RchiOBHm_Chr3g0497411
rosa_laevigata	RLG00000022466
rosa_multiflora	Rmu_sc0006392.1_g000005
rosa_roxburghii	Rroxscaffold_6G00388070
rosa_rugosa	Rorug03G0292700 Rorug03G0292800
rosa_samantha	Rh3AG336300 Rh3BG374400 Rh3CG370500 Rh3DG371400 Rh3DG372900 Rh6DG331700
rosa_wichuraiana	Rw3G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
Acc36I	ACCTGC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	24, 37
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	325
AluBI	AGCT	3 cut(s)	106, 118, 401
AluI	AGCT	3 cut(s)	106, 118, 401
AlwI	GGATC	2 cut(s)	24, 37
ApeKI	GCWGC	2 cut(s)	103, 115
ApoI	RAATTY	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	115, 127
BfmI	CTRYAG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	104, 116
BlsI	GCNGC	2 cut(s)	105, 117
BmiI	GGNNCC	1 cut(s)	31
BmsI	GCATC	3 cut(s)	106, 136, 318
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	52, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	52, 147
BseGI	GGATG	2 cut(s)	156, 207
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	115, 127
Bsh1285I	CGRYCG	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	29, 186, 204
BspCNI	CTCAG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	24, 37
BsrDI	GCAATG	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	52, 147
BssMI	GATC	3 cut(s)	29, 186, 204
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	156, 207
BstKTI	GATC	3 cut(s)	32, 189, 207
BstMBI	GATC	3 cut(s)	29, 186, 204
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 112, 124, 325
BstNSI	RCATGY	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	115, 127
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	2 cut(s)	29, 186
BstYI	RGATCY	2 cut(s)	29, 186
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	156, 207
BtsIMutI	CAGTG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	3 cut(s)	19, 247, 388
CviJI	RGCY	7 cut(s)	75, 106, 118, 319, 332, 349, 401
CviKI_1	RGCY	7 cut(s)	75, 106, 118, 319, 332, 349, 401
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	3 cut(s)	31, 188, 206
DpnII	GATC	3 cut(s)	29, 186, 204
FaeI	CATG	3 cut(s)	22, 250, 391
FatI	CATG	3 cut(s)	18, 246, 387
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	104, 116
FokI	GGATG	2 cut(s)	143, 214
Fsp4HI	GCNGC	2 cut(s)	104, 116
GluI	GCNGC	2 cut(s)	104, 116
Hin1II	CATG	3 cut(s)	22, 250, 391
HinfI	GANTC	2 cut(s)	263, 376
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	375
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	57, 65
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	115, 127, 178, 250
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 112, 124, 325
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	3 cut(s)	22, 250, 391
Kzo9I	GATC	3 cut(s)	29, 186, 204
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	6 cut(s)	79, 125, 175, 298, 314, 389
Lsp1109I	GCAGC	2 cut(s)	115, 127
LweI	GCATC	3 cut(s)	106, 136, 318
MalI	GATC	3 cut(s)	31, 188, 206
MboI	GATC	3 cut(s)	29, 186, 204
MboII	GAAGA	2 cut(s)	16, 230
MflI	RGATCY	2 cut(s)	29, 186
MluCI	AATT	2 cut(s)	137, 256
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	3 cut(s)	62, 191, 286
MseI	TTAA	3 cut(s)	300, 383, 409
Mva1269I	GAATGC	1 cut(s)	280
MwoI	GCNNNNNNNGC	4 cut(s)	103, 112, 124, 325
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	3 cut(s)	29, 186, 204
NlaIII	CATG	3 cut(s)	22, 250, 391
NlaIV	GGNNCC	1 cut(s)	31
NspI	RCATGY	1 cut(s)	22
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	105, 117
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PshBI	ATTAAT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	29, 186
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	300, 383, 409
SatI	GCNGC	2 cut(s)	104, 116
Sau3AI	GATC	3 cut(s)	29, 186, 204
SchI	GAGTC	1 cut(s)	385
SetI	ASST	6 cut(s)	108, 114, 120, 297, 360, 403
SfaNI	GCATC	3 cut(s)	106, 136, 318
SfcI	CTRYAG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	137, 256
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	58
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	137, 256
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	3 cut(s)	300, 383, 409
Tru9I	TTAA	3 cut(s)	300, 383, 409
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	103, 115
TspDTI	ATGAA	4 cut(s)	13, 17, 231, 411
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.