Rh3AG336300

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
49038235 .. 49041343
3109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG336300.1

Sequence Viewer

Length: 1461 bp
ATGGAAAGGGGATATTTGATGATGTTGGCAACAGTGACAGTGACAGTGGTGGCTGTGTTGGGTTGTTGTGGTGGTGTTGAAGGGCTTGGTGTGAACTGGGGAACCATGGCTACGCATAAGATGCCTCCGGACACCGTTGTCCAGATGCTCAAGGACAATGGCATTCAGAAGGTGAAGCTCTTCGACGCCGAACAGTCGACCATGAGTGCTTTGGCTGGGACTAACATCGAGGTCATGGTTGCCATTCCCAATGATCAACTTGAGGCTATGACCAACTATGCCCGTGCCAAGGAATGGGTCCGGAGGAACGTGACCCGCTACAATTTCAATGGAGGAGTTCACGTCAAGTATGTAGCTGTTGGGAATGAGCCTTTTCTCACATCGTACAATGGTTCATTCCTGAATGTCACCTTCCCGGCACTTCAGAACATTCAAAACGCCCTTAATGAAGCTGGGGTTGGAGATTCCATAAAGGCTACTGTGCCCTTGAATGCTGATGTCTACAACTCACCAGAGTCCAATTCCGTCCCATCTGCAGGAAGGTTCCGGAGTGATATCAGTCAACTGATGACTGACATTGTCCAGTTCCTTGCCAAAAACAAGGCGCCTTTCACTGTAAATATTTACCCTTTCCTAAGTCTATATGGAAATGATGGCTTCCCTTTTAACTTTGCCTTCTTTGATGGGGATGCAAATGCCCTTGTCGACACCGCCACTGGGATTCAATATACCAATGTTTTCGATGCTAATTTTGATACCTTGGTTTCTTCCTTGAAAGCAATCGGATTTGGGGATATGACCATTATAGTAGGGGAGGTGGGATGGCCAACAGACGGAGACAAGAATGCCAATGCTGGTAATGCTTACAGATTTTATAACGGGCTTTTTACAAAACTTGGAGCCAATAGAGGCACCCCTCTGCGGCCTGGATATATAGAAGTCTACTTGTTTGGACTTATTGATGAGGATGCAAAGAGCATTGCCCCTGGAAGTTTTGAGCGTCATTGGGGAATTTTCGGTTATGATGGGCAGCCAAAGTTTGCAGTTGACGTTACTGGTCAGGGTCAAAACAAGTTCCTAATGGGCGCAAAGAATGTGCAATATCTTGAAAAGAAATGGTGTGCGTTCAATCCAAACGCCAAAGATCTGAGCAAACTTGCAGATAACATAAACTATGCTTGTACCTATGCAGATTGCACAGCACTGGAATACGGGTCTACTTGCAACAATTTAGATGCTAATGGGAATGCTTCATATGCGTTTAATATGTACTATCAGGTTCAGAATCAGGATGATCTATCCTGCAACTTTCAGGGTATGGCGGCCGTGACAACACAGAACATCTCACAAGGGACTTGCAATTTCATTATTCAGATAGCTTCTTCATCTACATTTTCTTTAAGACCCTCTCTACTGGTAGGCACAGTATTCATAGTACTTTTCTCGATACTGTTGCTATAG

Protein Analysis

486

Amino Acids

52.94

Weight (kDa)

4.91

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 350 5.9e-65 Glycosyl hydrolases family 17
X8 PF07983 372 - 441 8.3e-16 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
AasI GACNNNNNNGTC 1 cut(s) 137
AccB1I GGYRCC 2 cut(s) 604, 911
AccB7I CCANNNNNTGG 1 cut(s) 294
AccI GTMKAC 5 cut(s) 197, 501, 705, 942, 1217
AccIII TCCGGA 3 cut(s) 127, 300, 546
AciI CCGC 4 cut(s) 316, 711, 922, 1322
AcoI YGGCCR 2 cut(s) 824, 1323
AcsI RAATTY 1 cut(s) 1011
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 2 cut(s) 186, 605
AfaI GTAC 4 cut(s) 386, 1183, 1271, 1437
AfiI CCNNNNNNNGG 6 cut(s) 289, 294, 536, 717, 833, 921
AgsI TTSAA 8 cut(s) 80, 328, 434, 490, 725, 775, 1109, 1129
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 2 cut(s) 925, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
AluBI AGCT 4 cut(s) 178, 356, 452, 1379
AluI AGCT 4 cut(s) 178, 356, 452, 1379
Alw26I GTCTC 1 cut(s) 831
Aor13HI TCCGGA 3 cut(s) 127, 300, 546
AoxI GGCC 3 cut(s) 824, 923, 1323
ApeKI GCWGC 1 cut(s) 1030
ApoI RAATTY 1 cut(s) 1011
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 2 cut(s) 607, 1088
AspS9I GGNCC 1 cut(s) 298
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 3 cut(s) 184, 400, 501
AvaII GGWCC 1 cut(s) 298
BaeGI GKGCMC 1 cut(s) 486
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BalI TGGCCA 1 cut(s) 826
BanI GGYRCC 2 cut(s) 604, 911
BbvI GCAGC 1 cut(s) 1042
BccI CCATC 5 cut(s) 538, 647, 677, 816, 1019
BceAI ACGGC 1 cut(s) 1310
BcgI CGANNNNNNTGC 1 cut(s) 1435
BciT130I CCWGG 2 cut(s) 927, 987
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 831
BfmI CTRYAG 2 cut(s) 534, 1457
BfoI RGCGCY 1 cut(s) 608
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 3 cut(s) 923, 1031, 1323
BlsI GCNGC 3 cut(s) 924, 1032, 1324
BmcAI AGTACT 1 cut(s) 1437
Bme1390I CCNGG 3 cut(s) 416, 927, 987
Bme18I GGWCC 1 cut(s) 298
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 6 cut(s) 103, 299, 545, 606, 901, 913
BmrFI CCNGG 3 cut(s) 416, 927, 987
BmrI ACTGGG 2 cut(s) 106, 726
BmsI GCATC 6 cut(s) 111, 135, 679, 733, 958, 1225
BmuI ACTGGG 2 cut(s) 106, 726
BpuEI CTTGAG 2 cut(s) 134, 281
BpuMI CCSGG 1 cut(s) 416
BsaHI GRCGYC 2 cut(s) 186, 605
BsaJI CCNNGG 4 cut(s) 105, 288, 759, 985
BsaWI WCCGGW 3 cut(s) 127, 300, 546
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 6 cut(s) 289, 294, 536, 717, 833, 921
Bse1I ACTGG 6 cut(s) 101, 583, 721, 1060, 1209, 1419
Bse3DI GCAATG 1 cut(s) 978
BseAI TCCGGA 3 cut(s) 127, 300, 546
BseBI CCWGG 2 cut(s) 927, 987
BseDI CCNNGG 4 cut(s) 105, 288, 759, 985
BseGI GGATG 4 cut(s) 694, 827, 973, 1297
BseLI CCNNNNNNNGG 6 cut(s) 289, 294, 536, 717, 833, 921
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 1 cut(s) 1139
BseNI ACTGG 6 cut(s) 101, 583, 721, 1060, 1209, 1419
BseRI GAGGAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 486
BseX3I CGGCCG 1 cut(s) 1323
BseXI GCAGC 1 cut(s) 1042
BseYI CCCAGC 2 cut(s) 215, 452
Bsh1285I CGRYCG 1 cut(s) 1326
BshFI GGCC 3 cut(s) 826, 925, 1325
BshNI GGYRCC 2 cut(s) 604, 911
BsiEI CGRYCG 1 cut(s) 1326
BsiSI CCGG 4 cut(s) 128, 301, 416, 547
BslFI GGGAC 3 cut(s) 232, 512, 1366
BslI CCNNNNNNNGG 6 cut(s) 289, 294, 536, 717, 833, 921
BsmAI GTCTC 1 cut(s) 831
BsmFI GGGAC 3 cut(s) 232, 512, 1366
BsmI GAATGC 4 cut(s) 162, 496, 850, 1252
BsnI GGCC 3 cut(s) 826, 925, 1325
Bsp1286I GDGCHC 1 cut(s) 486
Bsp13I TCCGGA 3 cut(s) 127, 300, 546
Bsp143I GATC 3 cut(s) 253, 1144, 1294
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 4 cut(s) 316, 711, 922, 1322
BspANI GGCC 3 cut(s) 826, 925, 1325
BspCNI CTCAG 1 cut(s) 1140
BspEI TCCGGA 3 cut(s) 127, 300, 546
BspLI GGNNCC 6 cut(s) 103, 299, 545, 606, 901, 913
BspMAI CTGCAG 1 cut(s) 538
BspQI GCTCTTC 1 cut(s) 185
BspT107I GGYRCC 2 cut(s) 604, 911
BsrDI GCAATG 1 cut(s) 978
BsrI ACTGG 6 cut(s) 101, 583, 721, 1060, 1209, 1419
BssECI CCNNGG 4 cut(s) 105, 288, 759, 985
BssMI GATC 3 cut(s) 253, 1144, 1294
BssNI GRCGYC 2 cut(s) 186, 605
BssT1I CCWWGG 3 cut(s) 105, 288, 759
Bst2UI CCWGG 2 cut(s) 927, 987
Bst4CI ACNGT 9 cut(s) 34, 40, 46, 136, 195, 481, 616, 1426, 1452
Bst6I CTCTTC 1 cut(s) 185
BstACI GRCGYC 2 cut(s) 186, 605
BstAPI GCANNNNNTGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 635, 1148
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 4 cut(s) 694, 827, 973, 1297
BstH2I RGCGCY 1 cut(s) 608
BstHHI GCGC 2 cut(s) 607, 1088
BstKTI GATC 3 cut(s) 256, 1147, 1297
BstMAI GTCTC 1 cut(s) 831
BstMBI GATC 3 cut(s) 253, 1144, 1294
BstMCI CGRYCG 1 cut(s) 1326
BstMWI GCNNNNNNNGC 3 cut(s) 121, 860, 1256
BstNI CCWGG 2 cut(s) 927, 987
BstSCI CCNGG 3 cut(s) 414, 925, 985
BstSFI CTRYAG 2 cut(s) 534, 1457
BstSLI GKGCMC 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 1042
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
BstZI CGGCCG 1 cut(s) 1323
BsuRI GGCC 3 cut(s) 826, 925, 1325
BtgI CCRYGG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 4 cut(s) 694, 827, 973, 1297
BtsIMutI CAGTG 6 cut(s) 39, 45, 51, 612, 714, 1202
CfoI GCGC 2 cut(s) 607, 1088
Cfr13I GGNCC 1 cut(s) 298
CseI GACGC 2 cut(s) 194, 989
Csp6I GTAC 4 cut(s) 385, 1182, 1270, 1436
CviAII CATG 3 cut(s) 106, 202, 235
CviQI GTAC 4 cut(s) 385, 1182, 1270, 1436
DdeI CTNAG 2 cut(s) 635, 1148
DinI GGCGCC 1 cut(s) 606
DpnI GATC 3 cut(s) 255, 1146, 1296
DpnII GATC 3 cut(s) 253, 1144, 1294
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 2 cut(s) 824, 1323
EagI CGGCCG 1 cut(s) 1323
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EclXI CGGCCG 1 cut(s) 1323
Eco130I CCWWGG 3 cut(s) 105, 288, 759
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 298
Eco52I CGGCCG 1 cut(s) 1323
Eco57I CTGAAG 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 925, 985
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 3 cut(s) 105, 288, 759
EgeI GGCGCC 1 cut(s) 606
EheI GGCGCC 1 cut(s) 606
ErhI CCWWGG 3 cut(s) 105, 288, 759
FaeI CATG 3 cut(s) 109, 205, 238
FaqI GGGAC 3 cut(s) 232, 512, 1366
FatI CATG 3 cut(s) 105, 201, 234
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 1255
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 5 cut(s) 197, 501, 705, 942, 1217
Fnu4HI GCNGC 3 cut(s) 923, 1031, 1323
FokI GGATG 4 cut(s) 701, 834, 980, 1304
Fsp4HI GCNGC 3 cut(s) 923, 1031, 1323
GlaI GCGC 2 cut(s) 606, 1087
GluI GCNGC 3 cut(s) 923, 1031, 1323
GsaI CCCAGC 2 cut(s) 219, 456
HaeII RGCGCY 1 cut(s) 608
HaeIII GGCC 3 cut(s) 826, 925, 1325
HapII CCGG 4 cut(s) 128, 301, 416, 547
HgaI GACGC 2 cut(s) 194, 989
HhaI GCGC 2 cut(s) 607, 1088
Hin1I GRCGYC 2 cut(s) 186, 605
Hin1II CATG 3 cut(s) 109, 205, 238
Hin6I GCGC 2 cut(s) 605, 1086
HinP1I GCGC 2 cut(s) 605, 1086
HincII GTYRAC 4 cut(s) 198, 563, 706, 1048
HindII GTYRAC 4 cut(s) 198, 563, 706, 1048
HinfI GANTC 4 cut(s) 464, 515, 721, 1285
HpaII CCGG 4 cut(s) 128, 301, 416, 547
HphI GGTGA 3 cut(s) 184, 400, 501
Hpy166II GTNNAC 9 cut(s) 94, 198, 340, 502, 563, 706, 943, 1048, 1218
Hpy188I TCNGA 6 cut(s) 168, 426, 785, 1149, 1284, 1374
Hpy188III TCNNGA 8 cut(s) 128, 142, 301, 400, 547, 1106, 1289, 1444
Hpy8I GTNNAC 9 cut(s) 94, 198, 340, 502, 563, 706, 943, 1048, 1218
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 5 cut(s) 74, 163, 421, 534, 685
HpyCH4III ACNGT 9 cut(s) 34, 40, 46, 136, 195, 481, 616, 1426, 1452
HpyCH4IV ACGT 3 cut(s) 309, 342, 1050
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 860, 1256
HpyF3I CTNAG 2 cut(s) 635, 1148
HpySE526I ACGT 3 cut(s) 309, 342, 1050
Hsp92I GRCGYC 2 cut(s) 186, 605
Hsp92II CATG 3 cut(s) 109, 205, 238
HspAI GCGC 2 cut(s) 605, 1086
KasI GGCGCC 1 cut(s) 604
Kpn2I TCCGGA 3 cut(s) 127, 300, 546
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 253, 1144, 1294
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 899
Lsp1109I GCAGC 1 cut(s) 1042
LweI GCATC 6 cut(s) 111, 135, 679, 733, 958, 1225
MaeII ACGT 3 cut(s) 309, 342, 1050
MaeIII GTNAC 6 cut(s) 34, 40, 310, 406, 1051, 1327
MalI GATC 3 cut(s) 255, 1146, 1296
MboI GATC 3 cut(s) 253, 1144, 1294
MboII GAAGA 3 cut(s) 172, 759, 1374
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 1 cut(s) 486
MlsI TGGCCA 1 cut(s) 826
MluCI AATT 6 cut(s) 322, 520, 748, 1011, 1228, 1360
MluNI TGGCCA 1 cut(s) 826
Mly113I GGCGCC 1 cut(s) 605
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 439
Mox20I TGGCCA 1 cut(s) 826
MroI TCCGGA 3 cut(s) 127, 300, 546
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 826
MseI TTAA 4 cut(s) 444, 666, 1263, 1400
Msp20I TGGCCA 1 cut(s) 826
MspI CCGG 4 cut(s) 128, 301, 416, 547
MspR9I CCNGG 3 cut(s) 416, 927, 987
Mva1269I GAATGC 4 cut(s) 162, 496, 850, 1252
MvaI CCWGG 2 cut(s) 927, 987
MwoI GCNNNNNNNGC 3 cut(s) 121, 860, 1256
NarI GGCGCC 1 cut(s) 605
NciI CCSGG 1 cut(s) 416
NcoI CCATGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 1255
NdeII GATC 3 cut(s) 253, 1144, 1294
NlaIII CATG 3 cut(s) 109, 205, 238
NlaIV GGNNCC 6 cut(s) 103, 299, 545, 606, 901, 913
NmuCI GTSAC 5 cut(s) 34, 40, 310, 406, 1327
PciSI GCTCTTC 1 cut(s) 185
PctI GAATGC 4 cut(s) 162, 496, 850, 1252
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 464, 721, 1285
PflFI GACNNNGTC 1 cut(s) 578
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 3 cut(s) 924, 1032, 1324
PleI GAGTC 1 cut(s) 523
PluTI GGCGCC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 523
PsiI TTATAA 1 cut(s) 876
Psp6I CCWGG 2 cut(s) 925, 985
PspFI CCCAGC 2 cut(s) 215, 452
PspGI CCWGG 2 cut(s) 925, 985
PspN4I GGNNCC 6 cut(s) 103, 299, 545, 606, 901, 913
PspPI GGNCC 1 cut(s) 298
PsrI GAACNNNNNNTAC 2 cut(s) 94, 126
PstI CTGCAG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 1144
PsyI GACNNNGTC 1 cut(s) 578
RsaI GTAC 4 cut(s) 386, 1183, 1271, 1437
RsaNI GTAC 4 cut(s) 385, 1182, 1270, 1436
SalI GTCGAC 2 cut(s) 196, 704
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 4 cut(s) 444, 666, 1263, 1400
SatI GCNGC 3 cut(s) 923, 1031, 1323
Sau3AI GATC 3 cut(s) 253, 1144, 1294
Sau96I GGNCC 1 cut(s) 298
ScaI AGTACT 1 cut(s) 1437
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 3 cut(s) 416, 927, 987
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 6 cut(s) 111, 135, 679, 733, 958, 1225
SfcI CTRYAG 2 cut(s) 534, 1457
SfoI GGCGCC 1 cut(s) 606
SinI GGWCC 1 cut(s) 298
SmlI CTYRAG 2 cut(s) 149, 260
SmoI CTYRAG 2 cut(s) 149, 260
Sse9I AATT 6 cut(s) 322, 520, 748, 1011, 1228, 1360
SsiI CCGC 4 cut(s) 316, 711, 922, 1322
SspDI GGCGCC 1 cut(s) 604
SspI AATATT 1 cut(s) 622
StyD4I CCNGG 3 cut(s) 414, 925, 985
StyI CCWWGG 3 cut(s) 105, 288, 759
TaaI ACNGT 9 cut(s) 34, 40, 46, 136, 195, 481, 616, 1426, 1452
TaiI ACGT 3 cut(s) 312, 345, 1053
TaqI TCGA 6 cut(s) 183, 197, 228, 705, 741, 1445
TasI AATT 6 cut(s) 322, 520, 748, 1011, 1228, 1360
TatI WGTACW 2 cut(s) 1269, 1435
TauI GCSGC 2 cut(s) 925, 1325
TfiI GAWTC 3 cut(s) 464, 721, 1285
Tru1I TTAA 4 cut(s) 444, 666, 1263, 1400
Tru9I TTAA 4 cut(s) 444, 666, 1263, 1400
TscAI CASTG 6 cut(s) 39, 45, 51, 619, 721, 1209
TseFI GTSAC 5 cut(s) 34, 40, 310, 406, 1327
TseI GCWGC 1 cut(s) 1030
Tsp45I GTSAC 5 cut(s) 34, 40, 310, 406, 1327
TspDTI ATGAA 6 cut(s) 384, 462, 1242, 1354, 1374, 1420
TspGWI ACGGA 2 cut(s) 514, 849
TspRI CASTG 6 cut(s) 39, 45, 51, 619, 721, 1209
Tth111I GACNNNGTC 1 cut(s) 578
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 1011
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmiI GTMKAC 5 cut(s) 197, 501, 705, 942, 1217
XmnI GAANNNNTTC 1 cut(s) 179
ZrmI AGTACT 1 cut(s) 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.