Rmu_sc0006392.1_g000005

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006392.1
Physical Location & Seq
Forward (+)
18648 .. 20863
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006392.1_g000005.1.cds

Sequence Viewer

Length: 1356 bp
atggctacgcataagatgcctccggacaccgttgtccagatgctcaaggacaatggcattcagaaggtgaagctcttcgacgccgaacagtcgaccatgagtgctttggctgggactaacatcgaggtcatggttgccattcccaatgatcaacttgaggctatgaccaactatgcccgtgccaaggaatgggtccggaggaacgtgacccgctacaatttcaatggaggagttcacgtcaagtatgtagctgttgggaatgagccttttctcacatcatacaatggttcattcctgaatgtcaccttcccggcacttcagaacattcaaaacgcccttaatgaagctggggttggagattccataaaggctactgtgcccttgaatgctgatgtctacaactcaccagagtccaattccgtcccatctgcaggaaggttccggagtgatatcagtcaactgatgactgacattgtccagttccttgccaaaaacaaggcgcctttcactgtaaatatttaccctttcctaagtctatatggaaatgatggcttcccttttaactttgccttctttgatggggatgcaaatgcccttgtcgacaccgccactgggattcaatataccaatgtattcgatgctaattttgataccttggtttcttccttgaaagcaatcggatttggggatatgaccattatagtaggggaggtgggatggccaacagacggagacaagaatgccaatgctggtaatgcttacagattttataatgggctttttacaaaacttggagccaatagaggcacccctctgcggcctggatatatagaagtctacttgtttggacttattgatgaggatgcaaagagcattgcccctggaagttttgagcgtcattggggaattttcggttatgatgggcagcctaagtttgctgttgacgttactggtcagggtcaaaacaagttcctaatgggtgcaaagaatgtgcaatatcttgaaaagaaatggtgtgcgttcaatccaaacgccaaagatctgagcaaacttgcagataacataaactatgcttgtacctatgcagattgcacagcactggaatacgggtctacttgcaacaatttagatgctaatgggaatgcttcatatgcgtttaatatgtactatcaggttcagaatcaggatgaactatcctgcaactttcagggtatggcggccgtgacaacacagaacatctcacaagggacttgcaatttcattattcagatagcttcttcatctacattttctttaagaccctctctactggtaggcacagtactcatagtactcttctcgatactgttgctatag

Protein Analysis

451

Amino Acids

49.35

Weight (kDa)

4.95

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AasI GACNNNNNNGTC 1 cut(s) 32
AccB1I GGYRCC 2 cut(s) 499, 806
AccB7I CCANNNNNTGG 1 cut(s) 189
AccI GTMKAC 5 cut(s) 92, 396, 600, 837, 1112
AccIII TCCGGA 3 cut(s) 22, 195, 441
AciI CCGC 4 cut(s) 211, 606, 817, 1217
AcoI YGGCCR 2 cut(s) 719, 1218
AcsI RAATTY 1 cut(s) 906
AcuI CTGAAG 1 cut(s) 302
AcyI GRCGYC 2 cut(s) 81, 500
AfaI GTAC 4 cut(s) 1078, 1166, 1323, 1332
AfiI CCNNNNNNNGG 6 cut(s) 184, 189, 431, 612, 728, 816
AgsI TTSAA 7 cut(s) 223, 329, 385, 620, 670, 1004, 1024
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 2 cut(s) 820, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 4 cut(s) 73, 251, 347, 1274
AluI AGCT 4 cut(s) 73, 251, 347, 1274
Alw26I GTCTC 1 cut(s) 726
Aor13HI TCCGGA 3 cut(s) 22, 195, 441
AoxI GGCC 3 cut(s) 719, 818, 1218
ApeKI GCWGC 1 cut(s) 925
ApoI RAATTY 1 cut(s) 906
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 79, 295, 396
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 381
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BalI TGGCCA 1 cut(s) 721
BanI GGYRCC 2 cut(s) 499, 806
BbvI GCAGC 1 cut(s) 937
BccI CCATC 5 cut(s) 433, 542, 572, 711, 914
BceAI ACGGC 1 cut(s) 1205
BcgI CGANNNNNNTGC 1 cut(s) 1330
BciT130I CCWGG 2 cut(s) 822, 882
BclI TGATCA 1 cut(s) 148
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 726
BfmI CTRYAG 2 cut(s) 429, 1352
BfoI RGCGCY 1 cut(s) 503
BglII AGATCT 1 cut(s) 1039
BisI GCNGC 3 cut(s) 818, 926, 1218
BlsI GCNGC 3 cut(s) 819, 927, 1219
BmcAI AGTACT 2 cut(s) 1323, 1332
Bme1390I CCNGG 3 cut(s) 311, 822, 882
Bme18I GGWCC 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 5 cut(s) 194, 440, 501, 796, 808
BmrFI CCNGG 3 cut(s) 311, 822, 882
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 6 cut(s) 6, 30, 574, 628, 853, 1120
BmuI ACTGGG 1 cut(s) 621
BpuEI CTTGAG 2 cut(s) 29, 176
BpuMI CCSGG 1 cut(s) 311
BsaHI GRCGYC 2 cut(s) 81, 500
BsaJI CCNNGG 3 cut(s) 183, 654, 880
BsaWI WCCGGW 3 cut(s) 22, 195, 441
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 6 cut(s) 184, 189, 431, 612, 728, 816
Bse1I ACTGG 5 cut(s) 478, 616, 955, 1104, 1314
Bse3DI GCAATG 1 cut(s) 873
BseAI TCCGGA 3 cut(s) 22, 195, 441
BseBI CCWGG 2 cut(s) 822, 882
BseDI CCNNGG 3 cut(s) 183, 654, 880
BseGI GGATG 4 cut(s) 589, 722, 868, 1192
BseLI CCNNNNNNNGG 6 cut(s) 184, 189, 431, 612, 728, 816
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 1 cut(s) 1034
BseNI ACTGG 5 cut(s) 478, 616, 955, 1104, 1314
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 381
BseX3I CGGCCG 1 cut(s) 1218
BseXI GCAGC 1 cut(s) 937
BseYI CCCAGC 2 cut(s) 110, 347
Bsh1285I CGRYCG 1 cut(s) 1221
BshFI GGCC 3 cut(s) 721, 820, 1220
BshNI GGYRCC 2 cut(s) 499, 806
BsiEI CGRYCG 1 cut(s) 1221
BsiSI CCGG 4 cut(s) 23, 196, 311, 442
BslFI GGGAC 3 cut(s) 127, 407, 1261
BslI CCNNNNNNNGG 6 cut(s) 184, 189, 431, 612, 728, 816
BsmAI GTCTC 1 cut(s) 726
BsmFI GGGAC 3 cut(s) 127, 407, 1261
BsmI GAATGC 4 cut(s) 57, 391, 745, 1147
BsnI GGCC 3 cut(s) 721, 820, 1220
Bsp1286I GDGCHC 1 cut(s) 381
Bsp13I TCCGGA 3 cut(s) 22, 195, 441
Bsp143I GATC 2 cut(s) 148, 1039
BspACI CCGC 4 cut(s) 211, 606, 817, 1217
BspANI GGCC 3 cut(s) 721, 820, 1220
BspCNI CTCAG 1 cut(s) 1035
BspEI TCCGGA 3 cut(s) 22, 195, 441
BspLI GGNNCC 5 cut(s) 194, 440, 501, 796, 808
BspMAI CTGCAG 1 cut(s) 433
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 2 cut(s) 499, 806
BsrDI GCAATG 1 cut(s) 873
BsrI ACTGG 5 cut(s) 478, 616, 955, 1104, 1314
BssECI CCNNGG 3 cut(s) 183, 654, 880
BssMI GATC 2 cut(s) 148, 1039
BssNI GRCGYC 2 cut(s) 81, 500
BssT1I CCWWGG 2 cut(s) 183, 654
Bst2UI CCWGG 2 cut(s) 822, 882
Bst4CI ACNGT 6 cut(s) 31, 90, 376, 511, 1321, 1347
Bst6I CTCTTC 2 cut(s) 80, 1340
BstACI GRCGYC 2 cut(s) 81, 500
BstAPI GCANNNNNTGC 1 cut(s) 16
BstDEI CTNAG 3 cut(s) 530, 930, 1043
BstF5I GGATG 4 cut(s) 589, 722, 868, 1192
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 2 cut(s) 151, 1042
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 2 cut(s) 148, 1039
BstMCI CGRYCG 1 cut(s) 1221
BstMWI GCNNNNNNNGC 3 cut(s) 16, 755, 1151
BstNI CCWGG 2 cut(s) 822, 882
BstSCI CCNGG 3 cut(s) 309, 820, 880
BstSFI CTRYAG 2 cut(s) 429, 1352
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 937
BstX2I RGATCY 1 cut(s) 1039
BstYI RGATCY 1 cut(s) 1039
BstZI CGGCCG 1 cut(s) 1218
BsuRI GGCC 3 cut(s) 721, 820, 1220
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 4 cut(s) 589, 722, 868, 1192
BtsIMutI CAGTG 3 cut(s) 507, 609, 1097
CfoI GCGC 1 cut(s) 502
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 2 cut(s) 89, 884
Csp6I GTAC 4 cut(s) 1077, 1165, 1322, 1331
CviAII CATG 2 cut(s) 97, 130
CviQI GTAC 4 cut(s) 1077, 1165, 1322, 1331
DdeI CTNAG 3 cut(s) 530, 930, 1043
DinI GGCGCC 1 cut(s) 501
DpnI GATC 2 cut(s) 150, 1041
DpnII GATC 2 cut(s) 148, 1039
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 2 cut(s) 719, 1218
EagI CGGCCG 1 cut(s) 1218
Eam1104I CTCTTC 2 cut(s) 80, 1340
EarI CTCTTC 2 cut(s) 80, 1340
EclXI CGGCCG 1 cut(s) 1218
Eco130I CCWWGG 2 cut(s) 183, 654
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 193
Eco52I CGGCCG 1 cut(s) 1218
Eco57I CTGAAG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 820, 880
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 2 cut(s) 183, 654
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
ErhI CCWWGG 2 cut(s) 183, 654
FaeI CATG 2 cut(s) 100, 133
FaqI GGGAC 3 cut(s) 127, 407, 1261
FatI CATG 2 cut(s) 96, 129
FauI CCCGC 1 cut(s) 218
FauNDI CATATG 1 cut(s) 1150
FbaI TGATCA 1 cut(s) 148
FblI GTMKAC 5 cut(s) 92, 396, 600, 837, 1112
Fnu4HI GCNGC 3 cut(s) 818, 926, 1218
FokI GGATG 4 cut(s) 596, 729, 875, 1199
Fsp4HI GCNGC 3 cut(s) 818, 926, 1218
GlaI GCGC 1 cut(s) 501
GluI GCNGC 3 cut(s) 818, 926, 1218
GsaI CCCAGC 2 cut(s) 114, 351
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 3 cut(s) 721, 820, 1220
HapII CCGG 4 cut(s) 23, 196, 311, 442
HgaI GACGC 2 cut(s) 89, 884
HhaI GCGC 1 cut(s) 502
Hin1I GRCGYC 2 cut(s) 81, 500
Hin1II CATG 2 cut(s) 100, 133
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HincII GTYRAC 4 cut(s) 93, 458, 601, 943
HindII GTYRAC 4 cut(s) 93, 458, 601, 943
HinfI GANTC 4 cut(s) 359, 410, 616, 1180
HpaII CCGG 4 cut(s) 23, 196, 311, 442
HphI GGTGA 3 cut(s) 79, 295, 396
Hpy166II GTNNAC 8 cut(s) 93, 235, 397, 458, 601, 838, 943, 1113
Hpy188I TCNGA 6 cut(s) 63, 321, 680, 1044, 1179, 1269
Hpy188III TCNNGA 8 cut(s) 23, 37, 196, 295, 442, 1001, 1184, 1339
Hpy8I GTNNAC 8 cut(s) 93, 235, 397, 458, 601, 838, 943, 1113
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 58, 316, 429, 580
HpyCH4III ACNGT 6 cut(s) 31, 90, 376, 511, 1321, 1347
HpyCH4IV ACGT 3 cut(s) 204, 237, 945
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 755, 1151
HpyF3I CTNAG 3 cut(s) 530, 930, 1043
HpySE526I ACGT 3 cut(s) 204, 237, 945
Hsp92I GRCGYC 2 cut(s) 81, 500
Hsp92II CATG 2 cut(s) 100, 133
HspAI GCGC 1 cut(s) 500
KasI GGCGCC 1 cut(s) 499
Kpn2I TCCGGA 3 cut(s) 22, 195, 441
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 1039
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 794
Lsp1109I GCAGC 1 cut(s) 937
LweI GCATC 6 cut(s) 6, 30, 574, 628, 853, 1120
MaeII ACGT 3 cut(s) 204, 237, 945
MaeIII GTNAC 4 cut(s) 205, 301, 946, 1222
MalI GATC 2 cut(s) 150, 1041
MboI GATC 2 cut(s) 148, 1039
MboII GAAGA 4 cut(s) 67, 654, 1269, 1327
MflI RGATCY 1 cut(s) 1039
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 1 cut(s) 721
MluCI AATT 6 cut(s) 217, 415, 643, 906, 1123, 1255
MluNI TGGCCA 1 cut(s) 721
Mly113I GGCGCC 1 cut(s) 500
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 334
Mox20I TGGCCA 1 cut(s) 721
MroI TCCGGA 3 cut(s) 22, 195, 441
MroXI GAANNNNTTC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 721
MseI TTAA 4 cut(s) 339, 561, 1158, 1295
Msp20I TGGCCA 1 cut(s) 721
MspI CCGG 4 cut(s) 23, 196, 311, 442
MspR9I CCNGG 3 cut(s) 311, 822, 882
Mva1269I GAATGC 4 cut(s) 57, 391, 745, 1147
MvaI CCWGG 2 cut(s) 822, 882
MwoI GCNNNNNNNGC 3 cut(s) 16, 755, 1151
NarI GGCGCC 1 cut(s) 500
NciI CCSGG 1 cut(s) 311
NdeI CATATG 1 cut(s) 1150
NdeII GATC 2 cut(s) 148, 1039
NlaIII CATG 2 cut(s) 100, 133
NlaIV GGNNCC 5 cut(s) 194, 440, 501, 796, 808
NmuCI GTSAC 3 cut(s) 205, 301, 1222
PciSI GCTCTTC 1 cut(s) 80
PctI GAATGC 4 cut(s) 57, 391, 745, 1147
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 3 cut(s) 359, 616, 1180
PflFI GACNNNGTC 1 cut(s) 473
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 3 cut(s) 819, 927, 1219
PleI GAGTC 1 cut(s) 418
PluTI GGCGCC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 418
PsiI TTATAA 1 cut(s) 771
Psp6I CCWGG 2 cut(s) 820, 880
PspFI CCCAGC 2 cut(s) 110, 347
PspGI CCWGG 2 cut(s) 820, 880
PspN4I GGNNCC 5 cut(s) 194, 440, 501, 796, 808
PspPI GGNCC 1 cut(s) 193
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 1039
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 4 cut(s) 1078, 1166, 1323, 1332
RsaNI GTAC 4 cut(s) 1077, 1165, 1322, 1331
SalI GTCGAC 2 cut(s) 91, 599
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 339, 561, 1158, 1295
SatI GCNGC 3 cut(s) 818, 926, 1218
Sau3AI GATC 2 cut(s) 148, 1039
Sau96I GGNCC 1 cut(s) 193
ScaI AGTACT 2 cut(s) 1323, 1332
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 3 cut(s) 311, 822, 882
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 6 cut(s) 6, 30, 574, 628, 853, 1120
SfcI CTRYAG 2 cut(s) 429, 1352
SfoI GGCGCC 1 cut(s) 501
SinI GGWCC 1 cut(s) 193
SmlI CTYRAG 2 cut(s) 44, 155
SmoI CTYRAG 2 cut(s) 44, 155
Sse9I AATT 6 cut(s) 217, 415, 643, 906, 1123, 1255
SsiI CCGC 4 cut(s) 211, 606, 817, 1217
SspDI GGCGCC 1 cut(s) 499
SspI AATATT 1 cut(s) 517
StyD4I CCNGG 3 cut(s) 309, 820, 880
StyI CCWWGG 2 cut(s) 183, 654
TaaI ACNGT 6 cut(s) 31, 90, 376, 511, 1321, 1347
TaiI ACGT 3 cut(s) 207, 240, 948
TaqI TCGA 6 cut(s) 78, 92, 123, 600, 636, 1340
TasI AATT 6 cut(s) 217, 415, 643, 906, 1123, 1255
TatI WGTACW 3 cut(s) 1164, 1321, 1330
TauI GCSGC 2 cut(s) 820, 1220
TfiI GAWTC 3 cut(s) 359, 616, 1180
Tru1I TTAA 4 cut(s) 339, 561, 1158, 1295
Tru9I TTAA 4 cut(s) 339, 561, 1158, 1295
TscAI CASTG 3 cut(s) 514, 616, 1104
TseFI GTSAC 3 cut(s) 205, 301, 1222
TseI GCWGC 1 cut(s) 925
Tsp45I GTSAC 3 cut(s) 205, 301, 1222
TspDTI ATGAA 6 cut(s) 279, 357, 1137, 1203, 1249, 1269
TspGWI ACGGA 2 cut(s) 409, 744
TspRI CASTG 3 cut(s) 514, 616, 1104
Tth111I GACNNNGTC 1 cut(s) 473
Van91I CCANNNNNTGG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 906
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 5 cut(s) 92, 396, 600, 837, 1112
XmnI GAANNNNTTC 1 cut(s) 74
ZrmI AGTACT 2 cut(s) 1323, 1332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.