Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Forward (+)

8441520 .. 8444233

Gene Structure 2714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCGAGGATTCTCCGAAACGTTTATTCACTGAGAAGCTCTCTGTTTTCGTCAGAGTTACTTAGAAGAAGTGTGGTTGGAACATCGTTTCAGCTCCGAGGCTTTGCTGCCAAAGCTAAAAAGAAATCCAAGTCAGATGGAAATGGATCATCTGAAGAAGGTATGTCGAAAAAGGAGATTGCTCTTCAGCAAGCACTTGATCAGATTACCAGTTCATTTGGCAAAGGGTCCATAATGTATCTCGGTCGTGCTGTTTCTCCTAGAAATGTCCCGGTTTTCTCTACCGGATCTTTTGCCCTTGATGTAGCTTTGGGAGTTGGTGGCCTTCCTAAGGGGCGTGTTGTGGAGATATATGGTCCTGAAGCATCGGGAAAGACAACACTTGCTCTTCATGTTATTGCAGAAGCACAAAAACAAGGAGGAACCTGTGTCTTTGTAGATGCTGAGCATGCTCTTGATTCGTCACTTGCTAAGGCAATCGGTGTAAATACAGAAAATCTGCTTCTATCACAGCCTGATTGTGGCGAACAGGCCCTTAGTCTTGTGGATACTTTAATCCGAAGTGGTTCAGTTGATGTTATTGTAGTTGACAGTGTGGCTGCTCTTGTACCTAAAGGAGAACTTGAGGGCGAGATGGGTGATGCACATATGGCTATGCAAGCCAGATTGATGAGCCAAGCTTTGCGTAAATTGAGCCATTCTTTATCGTTATCGCAAACACTTCTGATCTTTATAAATCAGGTGAGATCAAAACTATCTACGTTTGGAGGATTTGGAGGTCCAACAGAAGTTACTTGTGGTGGAAATGCTTTGAAGTTTTATGCTTCTATGCGTTTGAATATCAAGCGAATTGGACTTATCAAGAAAGGCGAAGAGACAACGGGAAGTCAAGTCTCCGTGAAGATAGTGAAGAACAAACTCGCTCCGCCGTTTAGAACTGCTCAGTTTGAGCTTGAATTCGGCAAAGGAATCTGCAAGATCACGGAGATAATCGACCTGAGCATAAAGCACAAGTTCATCGCGAAAAACGGAACATTCTACAATCTCAACGGTAAAAACTACCATGGAAAAGAGGCTTTAAAGAGATTCCTTAAACAGAACGAATCTGATCAAGAAGAGCTCATGAAGAAGCTCCAAGACAAGCTCATCGCCGATGAAGCTGCAGATAAGGAAACTGAATCTGAATCTGAGGAAGAAGATTCCCTGAGAGTTGTGGTTTCACCTGACAACACAGATGATGAATCACCAGCTCTTGTTGTTGGAGCTGCTGCAGTGGTTGTTGAGGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

430

Amino Acids

46.16

Weight (kDa)

8.17

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	61 - 325	4.5e-118	RecA N-terminal domain
Rad51	PF08423	92 - 283	7.4e-08	Rad51
ATPase	PF06745	95 - 152	1.7e-06	KaiC
RecA_C	PF21096	329 - 382	2e-07	RecA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AccII	CGCG	1 cut(s)	1022
AciI	CCGC	1 cut(s)	926
AclI	AACGTT	1 cut(s)	21
AclWI	GGATC	2 cut(s)	154, 295
AcsI	RAATTY	1 cut(s)	956
AcuI	CTGAAG	3 cut(s)	170, 174, 381
AfaI	GTAC	1 cut(s)	609
AfiI	CCNNNNNNNGG	2 cut(s)	331, 521
AgsI	TTSAA	3 cut(s)	814, 838, 956
Alw21I	GWGCWC	1 cut(s)	1122
Alw26I	GTCTC	2 cut(s)	869, 898
AlwI	GGATC	2 cut(s)	154, 295
AoxI	GGCC	2 cut(s)	322, 531
ApeKI	GCWGC	6 cut(s)	107, 599, 1160, 1265, 1268, 1286
ApoI	RAATTY	1 cut(s)	956
Asp700I	GAANNNNTTC	1 cut(s)	565
AspS9I	GGNCC	4 cut(s)	228, 356, 532, 779
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	4 cut(s)	650, 754, 1212, 1236
AvaII	GGWCC	3 cut(s)	228, 356, 779
AxyI	CCTNAGG	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	1122
Bbv12I	GWGCWC	1 cut(s)	1122
BbvI	GCAGC	5 cut(s)	94, 586, 1147, 1252, 1255
BccI	CCATC	2 cut(s)	131, 628
BceAI	ACGGC	1 cut(s)	913
BcgI	CGANNNNNNTGC	2 cut(s)	1142, 1176
BciVI	GTATCC	1 cut(s)	541
BclI	TGATCA	2 cut(s)	199, 1108
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	869, 898
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	1161, 1269
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	6 cut(s)	108, 600, 1161, 1266, 1269, 1287
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	6 cut(s)	109, 601, 1162, 1267, 1270, 1288
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	3 cut(s)	228, 356, 779
BmgT120I	GGNCC	4 cut(s)	228, 356, 532, 779
BmiI	GGNNCC	2 cut(s)	229, 424
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	3 cut(s)	374, 430, 631
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
Bpu10I	CCTNAGC	2 cut(s)	471, 998
Bpu1102I	GCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	97, 1063
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 521
Bse1I	ACTGG	1 cut(s)	210
Bse21I	CCTNAGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	97, 1063
BseLI	CCNNNNNNNGG	2 cut(s)	331, 521
BseMII	CTCAG	6 cut(s)	23, 435, 956, 989, 1179, 1196
BseNI	ACTGG	1 cut(s)	210
BseXI	GCAGC	5 cut(s)	94, 586, 1147, 1252, 1255
Bsh1236I	CGCG	1 cut(s)	1022
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	324, 533
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	1122
BsiSI	CCGG	2 cut(s)	272, 285
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	331, 521
BsmAI	GTCTC	2 cut(s)	869, 898
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	324, 533
Bsp1286I	GDGCHC	1 cut(s)	1122
Bsp143I	GATC	7 cut(s)	146, 199, 287, 726, 746, 978, 1108
Bsp1720I	GCTNAGC	1 cut(s)	444
Bsp19I	CCATGG	1 cut(s)	1063
Bsp68I	TCGCGA	1 cut(s)	1022
BspACI	CCGC	1 cut(s)	926
BspANI	GGCC	2 cut(s)	324, 533
BspCNI	CTCAG	6 cut(s)	24, 436, 955, 990, 1180, 1197
BspFNI	CGCG	1 cut(s)	1022
BspHI	TCATGA	1 cut(s)	1122
BspLI	GGNNCC	2 cut(s)	229, 424
BspMAI	CTGCAG	2 cut(s)	1165, 1273
BspPI	GGATC	2 cut(s)	154, 295
BspQI	GCTCTTC	3 cut(s)	189, 393, 1110
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	97, 1063
BssMI	GATC	7 cut(s)	146, 199, 287, 726, 746, 978, 1108
BssT1I	CCWWGG	1 cut(s)	1063
Bst4CI	ACNGT	2 cut(s)	593, 1052
Bst6I	CTCTTC	4 cut(s)	189, 393, 867, 1110
BstC8I	GCNNGC	3 cut(s)	192, 450, 660
BstDSI	CCRYGG	1 cut(s)	1063
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	1022
BstKTI	GATC	7 cut(s)	149, 202, 290, 729, 749, 981, 1111
BstMAI	GTCTC	2 cut(s)	869, 898
BstMBI	GATC	7 cut(s)	146, 199, 287, 726, 746, 978, 1108
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 449, 650, 659, 1157
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	2 cut(s)	1161, 1269
BstUI	CGCG	1 cut(s)	1022
BstV1I	GCAGC	5 cut(s)	94, 586, 1147, 1252, 1255
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	324, 533
BtgI	CCRYGG	1 cut(s)	1063
BtgZI	GCGATG	2 cut(s)	1003, 1132
BtsI	GCAGTG	1 cut(s)	1278
BtsIMutI	CAGTG	3 cut(s)	29, 598, 1278
BtuMI	TCGCGA	1 cut(s)	1022
Cac8I	GCNNGC	3 cut(s)	192, 450, 660
CciI	TCATGA	1 cut(s)	1122
Cfr13I	GGNCC	4 cut(s)	228, 356, 532, 779
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	5 cut(s)	392, 449, 1064, 1123, 1290
CviQI	GTAC	1 cut(s)	608
DpnI	GATC	7 cut(s)	148, 201, 289, 728, 748, 980, 1110
DpnII	GATC	7 cut(s)	146, 199, 287, 726, 746, 978, 1108
DraI	TTTAAA	1 cut(s)	1080
Eam1104I	CTCTTC	4 cut(s)	189, 393, 867, 1110
EarI	CTCTTC	4 cut(s)	189, 393, 867, 1110
EciI	GGCGGA	1 cut(s)	915
Ecl136II	GAGCTC	1 cut(s)	1120
Eco130I	CCWWGG	1 cut(s)	1063
Eco24I	GRGCYC	1 cut(s)	1122
Eco47I	GGWCC	3 cut(s)	228, 356, 779
Eco53kI	GAGCTC	1 cut(s)	1120
Eco57I	CTGAAG	3 cut(s)	170, 174, 381
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	1120
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	956
EcoT14I	CCWWGG	1 cut(s)	1063
EcoT38I	GRGCYC	1 cut(s)	1122
ErhI	CCWWGG	1 cut(s)	1063
FaeI	CATG	5 cut(s)	395, 452, 1067, 1126, 1293
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	5 cut(s)	391, 448, 1063, 1122, 1289
FauNDI	CATATG	1 cut(s)	648
FbaI	TGATCA	2 cut(s)	199, 1108
Fnu4HI	GCNGC	6 cut(s)	108, 600, 1161, 1266, 1269, 1287
FriOI	GRGCYC	1 cut(s)	1122
Fsp4HI	GCNGC	6 cut(s)	108, 600, 1161, 1266, 1269, 1287
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	6 cut(s)	108, 600, 1161, 1266, 1269, 1287
HaeIII	GGCC	2 cut(s)	324, 533
HapII	CCGG	2 cut(s)	272, 285
Hin1II	CATG	5 cut(s)	395, 452, 1067, 1126, 1293
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	9 cut(s)	10, 458, 969, 1086, 1103, 1178, 1184, 1199, 1241
HpaII	CCGG	2 cut(s)	272, 285
HphI	GGTGA	4 cut(s)	650, 754, 1212, 1236
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188III	TCNNGA	7 cut(s)	359, 369, 455, 862, 1021, 1112, 1123
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	2 cut(s)	152, 335
HpyCH4III	ACNGT	2 cut(s)	593, 1052
HpyCH4IV	ACGT	2 cut(s)	21, 761
HpyCH4V	TGCA	6 cut(s)	401, 644, 658, 975, 1163, 1271
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 449, 650, 659, 1157
HpySE526I	ACGT	2 cut(s)	21, 761
Hsp92II	CATG	5 cut(s)	395, 452, 1067, 1126, 1293
Ksp22I	TGATCA	2 cut(s)	199, 1108
Kzo9I	GATC	7 cut(s)	146, 199, 287, 726, 746, 978, 1108
LguI	GCTCTTC	3 cut(s)	189, 393, 1110
LmnI	GCTCC	4 cut(s)	99, 928, 1137, 1262
Lsp1109I	GCAGC	5 cut(s)	94, 586, 1147, 1252, 1255
LweI	GCATC	3 cut(s)	374, 430, 631
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	21, 761
MaeIII	GTNAC	3 cut(s)	57, 462, 790
MalI	GATC	7 cut(s)	148, 201, 289, 728, 748, 980, 1110
MboI	GATC	7 cut(s)	146, 199, 287, 726, 746, 978, 1108
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	1122
MluCI	AATT	3 cut(s)	689, 849, 956
MmeI	TCCRAC	3 cut(s)	58, 806, 1240
MnlI	CCTC	8 cut(s)	92, 413, 619, 761, 770, 1066, 1183, 1276
MroXI	GAANNNNTTC	1 cut(s)	565
MseI	TTAA	3 cut(s)	554, 1079, 1092
MspI	CCGG	2 cut(s)	272, 285
MspR9I	CCNGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	1022
MwoI	GCNNNNNNNGC	5 cut(s)	113, 449, 650, 659, 1157
NciI	CCSGG	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	1063
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	7 cut(s)	146, 199, 287, 726, 746, 978, 1108
NlaIII	CATG	5 cut(s)	395, 452, 1067, 1126, 1293
NlaIV	GGNNCC	2 cut(s)	229, 424
NmuCI	GTSAC	1 cut(s)	462
NruI	TCGCGA	1 cut(s)	1022
NspI	RCATGY	1 cut(s)	452
PaeI	GCATGC	1 cut(s)	452
PagI	TCATGA	1 cut(s)	1122
PciSI	GCTCTTC	3 cut(s)	189, 393, 1110
PdmI	GAANNNNTTC	1 cut(s)	565
PfeI	GAWTC	9 cut(s)	10, 458, 969, 1086, 1103, 1178, 1184, 1199, 1241
PkrI	GCNGC	6 cut(s)	109, 601, 1162, 1267, 1270, 1288
PsiI	TTATAA	1 cut(s)	734
Psp124BI	GAGCTC	1 cut(s)	1122
Psp1406I	AACGTT	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	229, 424
PspPI	GGNCC	4 cut(s)	228, 356, 532, 779
PstI	CTGCAG	2 cut(s)	1165, 1273
PsuI	RGATCY	1 cut(s)	287
RruI	TCGCGA	1 cut(s)	1022
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
SacI	GAGCTC	1 cut(s)	1122
SapI	GCTCTTC	3 cut(s)	189, 393, 1110
SaqAI	TTAA	3 cut(s)	554, 1079, 1092
SatI	GCNGC	6 cut(s)	108, 600, 1161, 1266, 1269, 1287
Sau3AI	GATC	7 cut(s)	146, 199, 287, 726, 746, 978, 1108
Sau96I	GGNCC	4 cut(s)	228, 356, 532, 779
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	1122
SfaNI	GCATC	3 cut(s)	374, 430, 631
SfcI	CTRYAG	2 cut(s)	1161, 1269
SinI	GGWCC	3 cut(s)	228, 356, 779
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	3 cut(s)	689, 849, 956
SsiI	CCGC	1 cut(s)	926
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	1122
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	1063
TaaI	ACNGT	2 cut(s)	593, 1052
TaiI	ACGT	2 cut(s)	24, 764
TaqI	TCGA	2 cut(s)	167, 993
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	3 cut(s)	689, 849, 956
TfiI	GAWTC	9 cut(s)	10, 458, 969, 1086, 1103, 1178, 1184, 1199, 1241
Tru1I	TTAA	3 cut(s)	554, 1079, 1092
Tru9I	TTAA	3 cut(s)	554, 1079, 1092
TscAI	CASTG	3 cut(s)	36, 598, 1278
TseFI	GTSAC	1 cut(s)	462
TseI	GCWGC	6 cut(s)	107, 599, 1160, 1265, 1268, 1286
Tsp45I	GTSAC	1 cut(s)	462
TspDTI	ATGAA	6 cut(s)	204, 380, 1006, 1139, 1170, 1254
TspGWI	ACGGA	3 cut(s)	886, 998, 1044
TspRI	CASTG	3 cut(s)	36, 598, 1278
VpaK11BI	GGWCC	3 cut(s)	228, 356, 779
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	956
XceI	RCATGY	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	565
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.