Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Forward (+)

19076521 .. 19080032

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G207400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCAAGGCTTCTCCGAAACGCTCTTTCTATGAAACGTTTTCTATTTCCACCACAGGTGCATCGGAGAGGAATATTGGTGCCATCTACTCAGCTTTGCAATTTTTCTTCTAAAGGCAGAAAGAAATCTAAGTCAGATGGAAGTGACTCCAATGAAGAGAATATGTCCAAGAAAGATTTAGCCCTGCAGCAAGCCTTGGATCAGATTACATCCTCATTTGGAAAGGGATCTATAATGTGGCTTGGTCGGTCCGCCTCTCCTCGACAGGTCCCCGTGGTATCCACGGGTTCTTTTGCTCTGGATTTAGCACTGGGAACTGGTGGATTTCCGAAGGGACGTGTTGTGGAGATATTTGGTCCTGAGGCTTCTGGGAAAACTACTCTTGCTCTACATGTAATAGCCGAAGCACAGAAGCAAGGAGGGTACTGTGTTTTTGTTGATGCTGAGCATGCCCTTGATCCTTCACTGGCTCAGGCTATTGGGGTAAACACTGAGAATCTACTTCTCTCGCAACCTGATTGTGGTGAGCAAGCCCTCAGTCTTGTAGACACTCTAATCCGGAGTGGTTCAGTTGATGTTGTAGTTGTTGACAGTGTGGCTGCCCTTGTGCCTAAAGGTGAACTTGATGGTGAGATGGGTGATGCTCATATGGCTATGCAGGCTAGATTAATGAGCCAGGCGCTTCGCAAATTGAGTCACTCTTTGTCTCTATCGCAGACAATATTAATCTTTACAAATCAGGTGAGGTCGAAGATTTCTACTTTTGGAGGATTTGGTGGGCCAACTGAAGTTCCTTGTGGTGGCAATGCTTTGAAGTTTTATGCTTCAGTGCGACTTAATATTAGGAGAATAGGGCTTATCAAGAAGGGTGAAGAGACTTTAGGAAGTCAAGTTCAAGTGAAGATAGTGAAGAACAAACTTGCTCCTCCATTCAGAACAGTTCATATAGAGCTGGAGTTTGGTAAGGGTATATGTCGCGAATCAGAGATCATAGAATTGGGAGTGAAAAACAAATTCGTGACAAAGTCTGGTTCACATTATAATTTAAATGGTCAAAATTTCCATGGCAAGGATGCTCTGAAAAGGTTTTTAGCCGAGAATAACACTGCTATGGAAGAACTTACAACAAAGCTTAGGGAGAAGCTAGTAGATGTTGTGACAGACAATGAAGCAGAAACAGAACCTATGGAGGAAATTGTTTCACCTGATTCTACTGATGAAGATGCAGTTACGGCAGTCGGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

416

Amino Acids

44.8

Weight (kDa)

7.66

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1041
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	978
AccIII	TCCGGA	1 cut(s)	558
AciI	CCGC	1 cut(s)	252
AclI	AACGTT	1 cut(s)	37
AclWI	GGATC	3 cut(s)	207, 235, 452
AcsI	RAATTY	2 cut(s)	1013, 1057
AcuI	CTGAAG	2 cut(s)	807, 810
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	521, 800, 1069
AflIII	ACRYGT	2 cut(s)	337, 391
AgsI	TTSAA	2 cut(s)	814, 896
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	675
AloI	GAACNNNNNNTCC	2 cut(s)	876, 908
AluBI	AGCT	4 cut(s)	94, 952, 1132, 1144
AluI	AGCT	4 cut(s)	94, 952, 1132, 1144
Alw26I	GTCTC	2 cut(s)	711, 869
AlwI	GGATC	3 cut(s)	207, 235, 452
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	1 cut(s)	779
ApeKI	GCWGC	2 cut(s)	187, 599
ApoI	RAATTY	2 cut(s)	1013, 1057
AseI	ATTAAT	2 cut(s)	668, 725
AspLEI	GCGC	1 cut(s)	682
AspS9I	GGNCC	4 cut(s)	249, 268, 356, 779
AsuHPI	GGTGA	7 cut(s)	536, 629, 641, 650, 754, 881, 1194
AvaII	GGWCC	3 cut(s)	249, 268, 356
AxyI	CCTNAGG	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	199, 586
BccI	CCATC	4 cut(s)	91, 131, 620, 628
BciT130I	CCWGG	1 cut(s)	677
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	711, 869
BfaI	CTAG	2 cut(s)	663, 1145
BfmI	CTRYAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	188, 600
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	2 cut(s)	189, 601
Bme1390I	CCNGG	1 cut(s)	677
Bme18I	GGWCC	3 cut(s)	249, 268, 356
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	249, 268, 356, 779
BmiI	GGNNCC	2 cut(s)	81, 270
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	5 cut(s)	70, 430, 631, 1063, 1213
BmuI	ACTGGG	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	974
Bpu10I	CCTNAGC	2 cut(s)	471, 1133
Bpu1102I	GCTNAGC	1 cut(s)	444
BsaJI	CCNNGG	4 cut(s)	195, 273, 282, 1063
BsaWI	WCCGGW	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	3 cut(s)	521, 800, 1069
Bse1I	ACTGG	3 cut(s)	315, 322, 471
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	811
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	4 cut(s)	195, 273, 282, 1063
BseGI	GGATG	2 cut(s)	209, 1078
BseLI	CCNNNNNNNGG	3 cut(s)	521, 800, 1069
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	6 cut(s)	104, 351, 435, 483, 485, 550
BseNI	ACTGG	3 cut(s)	315, 322, 471
BseRI	GAGGAG	2 cut(s)	249, 915
BseXI	GCAGC	2 cut(s)	199, 586
Bsh1236I	CGCG	1 cut(s)	978
BshFI	GGCC	1 cut(s)	781
BshNI	GGYRCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	2 cut(s)	254, 348
BslI	CCNNNNNNNGG	3 cut(s)	521, 800, 1069
BsmAI	GTCTC	2 cut(s)	711, 869
BsmFI	GGGAC	2 cut(s)	254, 348
BsnI	GGCC	1 cut(s)	781
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	199, 227, 457, 987
Bsp1720I	GCTNAGC	1 cut(s)	444
Bsp19I	CCATGG	1 cut(s)	1063
Bsp68I	TCGCGA	1 cut(s)	978
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	6 cut(s)	103, 352, 436, 484, 484, 549
BspEI	TCCGGA	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	978
BspLI	GGNNCC	2 cut(s)	81, 270
BspMAI	CTGCAG	1 cut(s)	189
BspPI	GGATC	3 cut(s)	207, 235, 452
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	811
BsrI	ACTGG	3 cut(s)	315, 322, 471
BssECI	CCNNGG	4 cut(s)	195, 273, 282, 1063
BssMI	GATC	4 cut(s)	199, 227, 457, 987
BssT1I	CCWWGG	2 cut(s)	195, 1063
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	3 cut(s)	428, 593, 940
Bst6I	CTCTTC	2 cut(s)	150, 867
BstC8I	GCNNGC	4 cut(s)	192, 450, 531, 660
BstDEI	CTNAG	8 cut(s)	90, 129, 360, 444, 471, 492, 536, 1133
BstDSI	CCRYGG	3 cut(s)	273, 282, 1063
BstF5I	GGATG	2 cut(s)	209, 1078
BstFNI	CGCG	1 cut(s)	978
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	682
BstKTI	GATC	4 cut(s)	202, 230, 460, 990
BstMAI	GTCTC	2 cut(s)	711, 869
BstMBI	GATC	4 cut(s)	199, 227, 457, 987
BstMWI	GCNNNNNNNGC	4 cut(s)	449, 650, 659, 1232
BstNI	CCWGG	1 cut(s)	677
BstNSI	RCATGY	2 cut(s)	395, 452
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	185
BstUI	CGCG	1 cut(s)	978
BstV1I	GCAGC	2 cut(s)	199, 586
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
Bsu36I	CCTNAGG	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	781
BtgI	CCRYGG	3 cut(s)	273, 282, 1063
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	209, 1078
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	6 cut(s)	308, 464, 489, 598, 834, 1104
BtuMI	TCGCGA	1 cut(s)	978
Cac8I	GCNNGC	4 cut(s)	192, 450, 531, 660
CfoI	GCGC	1 cut(s)	682
Cfr13I	GGNCC	4 cut(s)	249, 268, 356, 779
CpoI	CGGWCCG	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	424
CspI	CGGWCCG	1 cut(s)	249
CviAII	CATG	3 cut(s)	392, 449, 1064
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	8 cut(s)	90, 129, 360, 444, 471, 492, 536, 1133
DpnI	GATC	4 cut(s)	201, 229, 459, 989
DpnII	GATC	4 cut(s)	199, 227, 457, 987
DraI	TTTAAA	1 cut(s)	1047
Eam1104I	CTCTTC	2 cut(s)	150, 867
EarI	CTCTTC	2 cut(s)	150, 867
EciI	GGCGGA	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	195, 1063
Eco47I	GGWCC	3 cut(s)	249, 268, 356
Eco57I	CTGAAG	2 cut(s)	807, 810
Eco81I	CCTNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	675
EcoT14I	CCWWGG	2 cut(s)	195, 1063
ErhI	CCWWGG	2 cut(s)	195, 1063
FaeI	CATG	3 cut(s)	395, 452, 1067
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	2 cut(s)	254, 348
FatI	CATG	3 cut(s)	391, 448, 1063
FauNDI	CATATG	1 cut(s)	648
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	188, 600
FokI	GGATG	2 cut(s)	196, 1085
Fsp4HI	GCNGC	2 cut(s)	188, 600
FspBI	CTAG	2 cut(s)	663, 1145
GlaI	GCGC	1 cut(s)	681
GluI	GCNGC	2 cut(s)	188, 600
GsuI	CTGGAG	1 cut(s)	974
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	1 cut(s)	781
HapII	CCGG	1 cut(s)	559
HhaI	GCGC	1 cut(s)	682
Hin1II	CATG	3 cut(s)	395, 452, 1067
Hin6I	GCGC	1 cut(s)	680
HinP1I	GCGC	1 cut(s)	680
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	1130
HinfI	GANTC	5 cut(s)	146, 496, 694, 980, 1208
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	7 cut(s)	536, 629, 641, 650, 754, 881, 1194
Hpy166II	GTNNAC	5 cut(s)	487, 547, 589, 620, 1034
Hpy188I	TCNGA	9 cut(s)	17, 66, 136, 204, 330, 935, 985, 1080, 1241
Hpy188III	TCNNGA	6 cut(s)	299, 359, 559, 862, 977, 1018
Hpy8I	GTNNAC	5 cut(s)	487, 547, 589, 620, 1034
HpyAV	CCTTC	3 cut(s)	325, 471, 859
HpyCH4III	ACNGT	3 cut(s)	428, 593, 940
HpyCH4IV	ACGT	2 cut(s)	37, 337
HpyCH4V	TGCA	5 cut(s)	61, 99, 187, 658, 1226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	449, 650, 659, 1232
HpyF3I	CTNAG	8 cut(s)	90, 129, 360, 444, 471, 492, 536, 1133
HpySE526I	ACGT	2 cut(s)	37, 337
Hsp92II	CATG	3 cut(s)	395, 452, 1067
HspAI	GCGC	1 cut(s)	680
Kpn2I	TCCGGA	1 cut(s)	558
Kzo9I	GATC	4 cut(s)	199, 227, 457, 987
LmnI	GCTCC	1 cut(s)	928
Lsp1109I	GCAGC	2 cut(s)	199, 586
LweI	GCATC	5 cut(s)	70, 430, 631, 1063, 1213
MaeI	CTAG	2 cut(s)	663, 1145
MaeII	ACGT	2 cut(s)	37, 337
MaeIII	GTNAC	5 cut(s)	143, 695, 1018, 1156, 1228
MalI	GATC	4 cut(s)	201, 229, 459, 989
MboI	GATC	4 cut(s)	199, 227, 457, 987
MboII	GAAGA	8 cut(s)	99, 167, 763, 884, 913, 922, 1127, 1232
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	7 cut(s)	100, 689, 995, 1013, 1042, 1057, 1194
MlyI	GAGTC	2 cut(s)	140, 703
MmeI	TCCRAC	1 cut(s)	1219
MroI	TCCGGA	1 cut(s)	558
MseI	TTAA	4 cut(s)	668, 725, 837, 1046
MslI	CAYNNNNRTG	1 cut(s)	1109
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	677
MvnI	CGCG	1 cut(s)	978
MwoI	GCNNNNNNNGC	4 cut(s)	449, 650, 659, 1232
NcoI	CCATGG	1 cut(s)	1063
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	4 cut(s)	199, 227, 457, 987
NlaIII	CATG	3 cut(s)	395, 452, 1067
NlaIV	GGNNCC	2 cut(s)	81, 270
NmeAIII	GCCGAG	1 cut(s)	1120
NmuCI	GTSAC	4 cut(s)	143, 695, 1018, 1156
NruI	TCGCGA	1 cut(s)	978
NspI	RCATGY	2 cut(s)	395, 452
PaeI	GCATGC	1 cut(s)	452
PciI	ACATGT	1 cut(s)	391
PfeI	GAWTC	3 cut(s)	496, 980, 1208
PflFI	GACNNNGTC	1 cut(s)	1024
PkrI	GCNGC	2 cut(s)	189, 601
PleI	GAGTC	2 cut(s)	140, 702
PpsI	GAGTC	2 cut(s)	140, 702
PpuMI	RGGWCCY	1 cut(s)	268
PscI	ACATGT	1 cut(s)	391
PshBI	ATTAAT	2 cut(s)	668, 725
PsiI	TTATAA	1 cut(s)	1041
Psp1406I	AACGTT	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	2 cut(s)	81, 270
PspPI	GGNCC	4 cut(s)	249, 268, 356, 779
PspPPI	RGGWCCY	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	1024
RruI	TCGCGA	1 cut(s)	978
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	1109
Rsr2I	CGGWCCG	1 cut(s)	249
RsrII	CGGWCCG	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	668, 725, 837, 1046
SatI	GCNGC	2 cut(s)	188, 600
Sau3AI	GATC	4 cut(s)	199, 227, 457, 987
Sau96I	GGNCC	4 cut(s)	249, 268, 356, 779
SchI	GAGTC	2 cut(s)	140, 703
ScrFI	CCNGG	1 cut(s)	677
SfaNI	GCATC	5 cut(s)	70, 430, 631, 1063, 1213
SfcI	CTRYAG	1 cut(s)	185
SinI	GGWCC	3 cut(s)	249, 268, 356
SmiI	ATTTAAAT	1 cut(s)	1047
SmiMI	CAYNNNNRTG	1 cut(s)	1109
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	7 cut(s)	100, 689, 995, 1013, 1042, 1057, 1194
SsiI	CCGC	1 cut(s)	252
SspI	AATATT	3 cut(s)	75, 723, 841
SspMI	CTAG	2 cut(s)	663, 1145
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	2 cut(s)	195, 1063
SwaI	ATTTAAAT	1 cut(s)	1047
TaaI	ACNGT	3 cut(s)	428, 593, 940
TaiI	ACGT	2 cut(s)	40, 340
TaqI	TCGA	2 cut(s)	262, 749
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	7 cut(s)	100, 689, 995, 1013, 1042, 1057, 1194
TfiI	GAWTC	3 cut(s)	496, 980, 1208
Tru1I	TTAA	4 cut(s)	668, 725, 837, 1046
Tru9I	TTAA	4 cut(s)	668, 725, 837, 1046
TscAI	CASTG	6 cut(s)	315, 471, 496, 598, 834, 1111
TseFI	GTSAC	4 cut(s)	143, 695, 1018, 1156
TseI	GCWGC	2 cut(s)	187, 599
Tsp45I	GTSAC	4 cut(s)	143, 695, 1018, 1156
TspDTI	ATGAA	5 cut(s)	47, 168, 932, 1182, 1233
TspRI	CASTG	6 cut(s)	315, 471, 496, 598, 834, 1111
Tth111I	GACNNNGTC	1 cut(s)	1024
VpaK11BI	GGWCC	3 cut(s)	249, 268, 356
VspI	ATTAAT	2 cut(s)	668, 725
XapI	RAATTY	2 cut(s)	1013, 1057
XceI	RCATGY	2 cut(s)	395, 452
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	2 cut(s)	663, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.