Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Forward (+)

6849987 .. 6853465

Gene Structure 3479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTCCAAGAAGGATTTAGCTCTCCAGCAAGCACTTGATCAGATTACGGATTCTTTTGGAAAGGGTTCTATAATGTGGCTTGGTCGGTCTGGGGCTCCCAGACATGTTGAGGTTGTCTCCACAGGATCTTTTTCTCTGGATCTGGCACTGGGAACCGGTGGCTTTCCCAAGGGACGTGTTGTGGAGATTTATGGTCCTGAGGCTTCTGGGAAAACTACTCTCGCTCTACATGTAATAGCTGAAGCACAGAAACAAGGAGGTTACTGTGTTTTTGTTGATGCTGAGCATGCCCTTGATCCTACACTGGCTCAGGCGATTGGGGTAAAGACCGAGAATCTACTTCTATCGCAACCTGATTGTGGAGAGCAAGCCCTCAGTCTTGTGGACACTCTAATCAGGAGTGGTTCAGTTGATGTTGTTGTTGTTGACAGTGTGGCTGCCTTAGTGCCTAAAGGCGAACTTGATGGGGAGATGGGTGATGCTCATATGGCAATGCAGGCTAGGTTAATGAGTCAGGCGCTTCGGAAATTAAGTCACTCTTTATCTCTATCCCAGACAATATTAATCTTTACAAATCAGGTCAGGGCTAAGCTTTCGACTTTTGGAGGATTTGGTGGGCCTCAAGAAGTTACTTGTGGTGGCAATGCTTTGAAGTTCTATGCCTCAGTCCGCCTTAATGTTAGGAGAATAGGGCTTATCAAGAAGGGTGAAGAGACGGTAGGGAGTCAAGTTCAAGTGAAGATAGTGAAGAACAAGCTTGCTCCACCATTTAGAACTGTTCTGTTGGAGCTCGAGTTTGGGAAGGGTTTATGTCGTGAATCGGAGCTCATCGACTTGGGATTAAAAAACAAATTCATCATAAAAAGTGGTTCACATTATAATTTAAATGGCCAAAACTTTCATGGCAAAGATGCTTTGAAAAGGTTTTTGTCTGAGGATGATGCCGCTAGGGAAGAACTTGTATTGAAGTTGAGGGAGAAGCTAGTTGATGCTGTGGAACACAAGGAAGCAGACACAGAAGCTTTAAATGAAAGTCCAACTGAGGAAATTGTTTCACCAGATTCTACTGATGAAGATGCAGCTACAGCAGTTGGAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

366

Amino Acids

39.24

Weight (kDa)

5.6

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	7 - 270	4.3e-117	RecA N-terminal domain
Rad51	PF08423	38 - 229	2.1e-10	Rad51
ATPase	PF06745	40 - 96	6.9e-07	KaiC
RecA_C	PF21096	275 - 328	4.9e-08	RecA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	879
AciI	CCGC	2 cut(s)	670, 945
AclWI	GGATC	3 cut(s)	133, 147, 290
AcoI	YGGCCR	1 cut(s)	889
AcsI	RAATTY	1 cut(s)	851
AcuI	CTGAAG	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	359
AflIII	ACRYGT	3 cut(s)	103, 175, 229
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	652, 734, 919, 967
AjiI	CACGTC	1 cut(s)	176
AluBI	AGCT	9 cut(s)	20, 239, 592, 757, 790, 826, 982, 1022, 1082
AluI	AGCT	9 cut(s)	20, 239, 592, 757, 790, 826, 982, 1022, 1082
Alw21I	GWGCWC	2 cut(s)	792, 828
Alw26I	GTCTC	2 cut(s)	121, 707
AlwI	GGATC	3 cut(s)	133, 147, 290
Ama87I	CYCGRG	1 cut(s)	791
AoxI	GGCC	2 cut(s)	617, 889
ApeKI	GCWGC	2 cut(s)	437, 1079
ApoI	RAATTY	1 cut(s)	851
AseI	ATTAAT	1 cut(s)	563
AsiGI	ACCGGT	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	2 cut(s)	194, 617
AsuHPI	GGTGA	3 cut(s)	488, 719, 1047
AvaI	CYCGRG	1 cut(s)	791
AvaII	GGWCC	1 cut(s)	194
AxyI	CCTNAGG	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	891
BanII	GRGCYC	3 cut(s)	97, 792, 828
Bbv12I	GWGCWC	2 cut(s)	792, 828
BbvI	GCAGC	2 cut(s)	424, 1091
BccI	CCATC	2 cut(s)	458, 466
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	121, 707
BfaI	CTAG	3 cut(s)	501, 948, 983
BfmI	CTRYAG	1 cut(s)	1083
BfoI	RGCGCY	1 cut(s)	521
BisI	GCNGC	3 cut(s)	438, 945, 1080
BlpI	GCTNAGC	2 cut(s)	282, 588
BlsI	GCNGC	3 cut(s)	439, 946, 1081
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	791
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	194, 617
BmiI	GGNNCC	2 cut(s)	96, 154
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	6 cut(s)	268, 469, 901, 931, 979, 1066
BmuI	ACTGGG	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu1102I	GCTNAGC	2 cut(s)	282, 588
BpuEI	CTTGAG	1 cut(s)	606
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	153, 309
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	2 cut(s)	498, 649
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	943
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	2 cut(s)	498, 649
BseMII	CTCAG	7 cut(s)	189, 273, 323, 388, 678, 924, 1032
BseNI	ACTGG	2 cut(s)	153, 309
BseXI	GCAGC	2 cut(s)	424, 1091
BshFI	GGCC	2 cut(s)	619, 891
BshTI	ACCGGT	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	792, 828
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	2 cut(s)	121, 707
BsmBI	CGTCTC	1 cut(s)	707
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	619, 891
BsoBI	CYCGRG	1 cut(s)	791
Bsp1286I	GDGCHC	3 cut(s)	97, 792, 828
Bsp143I	GATC	4 cut(s)	37, 125, 139, 295
Bsp1720I	GCTNAGC	2 cut(s)	282, 588
BspACI	CCGC	2 cut(s)	670, 945
BspANI	GGCC	2 cut(s)	619, 891
BspCNI	CTCAG	7 cut(s)	190, 274, 322, 387, 677, 925, 1033
BspLI	GGNNCC	2 cut(s)	96, 154
BspPI	GGATC	3 cut(s)	133, 147, 290
BsrDI	GCAATG	2 cut(s)	498, 649
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	153, 309
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	4 cut(s)	37, 125, 139, 295
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	4 cut(s)	266, 431, 718, 778
Bst6I	CTCTTC	1 cut(s)	705
BstC8I	GCNNGC	5 cut(s)	30, 288, 369, 498, 759
BstDEI	CTNAG	9 cut(s)	198, 282, 309, 374, 442, 588, 664, 933, 1041
BstF5I	GGATG	1 cut(s)	943
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	4 cut(s)	40, 128, 142, 298
BstMAI	GTCTC	2 cut(s)	121, 707
BstMBI	GATC	4 cut(s)	37, 125, 139, 295
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 488, 497, 1085, 1094
BstNSI	RCATGY	3 cut(s)	107, 233, 290
BstSFI	CTRYAG	1 cut(s)	1083
BstV1I	GCAGC	2 cut(s)	424, 1091
BstX2I	RGATCY	2 cut(s)	125, 139
BstYI	RGATCY	2 cut(s)	125, 139
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	619, 891
BtrI	CACGTC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	943
BtsIMutI	CAGTG	3 cut(s)	146, 302, 436
Cac8I	GCNNGC	5 cut(s)	30, 288, 369, 498, 759
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	194, 617
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	4 cut(s)	104, 230, 287, 902
DdeI	CTNAG	9 cut(s)	198, 282, 309, 374, 442, 588, 664, 933, 1041
DpnI	GATC	4 cut(s)	39, 127, 141, 297
DpnII	GATC	4 cut(s)	37, 125, 139, 295
DraI	TTTAAA	2 cut(s)	885, 1026
EaeI	YGGCCR	1 cut(s)	889
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
EciI	GGCGGA	1 cut(s)	659
Ecl136II	GAGCTC	2 cut(s)	790, 826
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	3 cut(s)	97, 792, 828
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	2 cut(s)	790, 826
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	791
EcoICRI	GAGCTC	2 cut(s)	790, 826
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	3 cut(s)	97, 792, 828
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	707
FaeI	CATG	4 cut(s)	107, 233, 290, 905
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 523, 555
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	4 cut(s)	103, 229, 286, 901
FauNDI	CATATG	1 cut(s)	486
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	438, 945, 1080
FokI	GGATG	1 cut(s)	950
FriOI	GRGCYC	3 cut(s)	97, 792, 828
Fsp4HI	GCNGC	3 cut(s)	438, 945, 1080
FspBI	CTAG	3 cut(s)	501, 948, 983
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	3 cut(s)	438, 945, 1080
GsuI	CTGGAG	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	619, 891
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	4 cut(s)	107, 233, 290, 905
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	3 cut(s)	590, 755, 1020
HinfI	GANTC	6 cut(s)	50, 334, 511, 724, 818, 1061
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	3 cut(s)	488, 719, 1047
Hpy166II	GTNNAC	3 cut(s)	385, 427, 872
Hpy188I	TCNGA	4 cut(s)	42, 525, 823, 934
Hpy188III	TCNNGA	6 cut(s)	137, 197, 397, 623, 700, 815
Hpy8I	GTNNAC	3 cut(s)	385, 427, 872
HpyAV	CCTTC	3 cut(s)	4, 697, 796
HpyCH4III	ACNGT	4 cut(s)	266, 431, 718, 778
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	496, 1079
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 488, 497, 1085, 1094
HpyF3I	CTNAG	9 cut(s)	198, 282, 309, 374, 442, 588, 664, 933, 1041
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	4 cut(s)	107, 233, 290, 905
HspAI	GCGC	1 cut(s)	518
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	37, 125, 139, 295
LmnI	GCTCC	5 cut(s)	100, 766, 787, 823, 1094
Lsp1109I	GCAGC	2 cut(s)	424, 1091
LweI	GCATC	6 cut(s)	268, 469, 901, 931, 979, 1066
MaeI	CTAG	3 cut(s)	501, 948, 983
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	3 cut(s)	260, 533, 628
MalI	GATC	4 cut(s)	39, 127, 141, 297
MboI	GATC	4 cut(s)	37, 125, 139, 295
MboII	GAAGA	5 cut(s)	722, 751, 760, 965, 1085
MflI	RGATCY	2 cut(s)	125, 139
MhlI	GDGCHC	3 cut(s)	97, 792, 828
MlsI	TGGCCA	1 cut(s)	891
MluCI	AATT	4 cut(s)	527, 851, 880, 1047
MluNI	TGGCCA	1 cut(s)	891
MlyI	GAGTC	2 cut(s)	520, 733
MmeI	TCCRAC	3 cut(s)	765, 1061, 1072
Mox20I	TGGCCA	1 cut(s)	891
MroXI	GAANNNNTTC	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	891
MseI	TTAA	7 cut(s)	506, 530, 563, 675, 842, 884, 1025
Msp20I	TGGCCA	1 cut(s)	891
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	5 cut(s)	287, 488, 497, 1085, 1094
NdeI	CATATG	1 cut(s)	486
NdeII	GATC	4 cut(s)	37, 125, 139, 295
NlaIII	CATG	4 cut(s)	107, 233, 290, 905
NlaIV	GGNNCC	2 cut(s)	96, 154
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	3 cut(s)	107, 233, 290
PaeI	GCATGC	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	791
PciI	ACATGT	2 cut(s)	103, 229
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	4 cut(s)	50, 334, 818, 1061
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	439, 946, 1081
PleI	GAGTC	2 cut(s)	519, 732
PpsI	GAGTC	2 cut(s)	519, 732
PscI	ACATGT	2 cut(s)	103, 229
PshBI	ATTAAT	1 cut(s)	563
PsiI	TTATAA	1 cut(s)	879
Psp124BI	GAGCTC	2 cut(s)	792, 828
PspN4I	GGNNCC	2 cut(s)	96, 154
PspPI	GGNCC	2 cut(s)	194, 617
PspXI	VCTCGAGB	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	125, 139
SacI	GAGCTC	2 cut(s)	792, 828
SaqAI	TTAA	7 cut(s)	506, 530, 563, 675, 842, 884, 1025
SatI	GCNGC	3 cut(s)	438, 945, 1080
Sau3AI	GATC	4 cut(s)	37, 125, 139, 295
Sau96I	GGNCC	2 cut(s)	194, 617
SchI	GAGTC	2 cut(s)	520, 733
SduI	GDGCHC	3 cut(s)	97, 792, 828
SfaNI	GCATC	6 cut(s)	268, 469, 901, 931, 979, 1066
SfcI	CTRYAG	1 cut(s)	1083
Sfr274I	CTCGAG	1 cut(s)	791
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	791
SmiI	ATTTAAAT	1 cut(s)	885
SmlI	CTYRAG	2 cut(s)	621, 791
SmoI	CTYRAG	2 cut(s)	621, 791
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	4 cut(s)	527, 851, 880, 1047
SsiI	CCGC	2 cut(s)	670, 945
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	3 cut(s)	501, 948, 983
SstI	GAGCTC	2 cut(s)	792, 828
StyI	CCWWGG	1 cut(s)	168
SwaI	ATTTAAAT	1 cut(s)	885
TaaI	ACNGT	4 cut(s)	266, 431, 718, 778
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	3 cut(s)	596, 792, 831
TaqII	GACCGA	2 cut(s)	75, 344
TasI	AATT	4 cut(s)	527, 851, 880, 1047
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	4 cut(s)	50, 334, 818, 1061
Tru1I	TTAA	7 cut(s)	506, 530, 563, 675, 842, 884, 1025
Tru9I	TTAA	7 cut(s)	506, 530, 563, 675, 842, 884, 1025
TscAI	CASTG	3 cut(s)	153, 309, 436
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	2 cut(s)	437, 1079
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	4 cut(s)	844, 890, 1044, 1086
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	3 cut(s)	153, 309, 436
VpaK11BI	GGWCC	1 cut(s)	194
VspI	ATTAAT	1 cut(s)	563
XapI	RAATTY	1 cut(s)	851
XceI	RCATGY	3 cut(s)	107, 233, 290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	899
XhoI	CTCGAG	1 cut(s)	791
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	3 cut(s)	501, 948, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.