Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Reverse (-)

16768634 .. 16772392

Gene Structure 3759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1209000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCGAGGCTTCTCCGAAACGCTTTTTCTATGAAACGTTTCCTATTCCCGCCACAGGTGAATCAGAGAGGAATGTTAGGGACATCTACTCAGTTTTGCAATTTTTCTTCTAAAGGTAGAAAGAAATCTAAGTCGGATGGAAGTGATTCCTGTGATGAGAATCTGTCGAAGAAGGAGTTAGCCCTGAAGCAAGCTCTTGATCAGATTACATCCTCATTTGGAAAGGGATCTATAATGTGGCTTGGTCGGTCCGTCTCTCCTAGACAAGTCCCAGTGGTATCTACGGGTTCTTTTTCTTTGGACATAGCACTGGGAATTGGTGGATTTCCGAAGGGACGTGTTGTGGAGATATACGGTCCTGAGGCATCTGGGAAAACTACTCTGGCTCTTCATGTAATAGCTGAATCACAGAAGCAAGGAGGGACATGTGTTTTTGTTGATGCTGAGCATGCTCTTGATCCTACACTGGCTCAGTCTATTGGGGTAAACACTGAGAATCTGCTTCTATCACAACCTGATTGTGGTGAGCAAGCCCTCAGTCTTGTAGACACTCTAATCCGGAGTGGTTCAGTTGATGTTGTTGTTATTGACAGTGTGGCCGCACTTGTGCCTAAAGGTGAACTTGATGGCGAGATGGGTGATGCTCATATGGCAATGCAGGCTAGACTAATGAGCCAGGCACTTCGCAAATTGAGTCACTCTTTATCTCTATCACAGACAATATTAATCTTTACAAATCAGGTCAGGGCGAAGCTTTCTACTTTTGGAGGATTTGGTGGGCCAACTGAAGTTACTTGTGGCGGCAATGCTTTGAAGTTTTATGCTTCAGTGCGCCTTAATATGAGGAGAATAGGACTTGTAAAGAAGGGTGAAGAGACTTTAGGAAGTCAAGTTCAAGTGAAGATAGTGAAGAACAAACTTGCCCCTCCATTTAGAACTGTTCAGATAGAGCTTGAGTTTGGTAAGGGTATATGTCGGGAATCAGAGATCATTGATTTGGGATTGAAAAACAAATTCATCACGAAGGCTGGTGCAATGTATGACTTAAACGGTCAAAGTTTCCGTGGCAAGGATGCTTTAAAAAGGTTTTTGTCCGAGAATAGTACTGCTCTGGAGGAACTTACAGCAAAGCTCACAGAGAAGCTAGTTGATGATGTGGCAGCCAGGGAAGCAGAAACAGAACTTATGGGTGAAGGTCCTGCAGAGGAAATTGTTTCACCTGATTCTACTGACGAAGATGCAGTTACTGCAGTAGGAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

421

Amino Acids

45.05

Weight (kDa)

6.92

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	61 - 325	4.4e-118	RecA N-terminal domain
Rad51	PF08423	90 - 283	2.9e-10	Rad51
ATPase	PF06745	94 - 151	3.4e-07	KaiC
RecA_C	PF21096	329 - 382	1.1e-08	RecA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	546
AccIII	TCCGGA	1 cut(s)	558
AciI	CCGC	3 cut(s)	50, 600, 801
AclI	AACGTT	1 cut(s)	37
AclWI	GGATC	2 cut(s)	235, 452
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	1013
AcuI	CTGAAG	3 cut(s)	206, 807, 810
AfaI	GTAC	1 cut(s)	1105
AfiI	CCNNNNNNNGG	3 cut(s)	55, 521, 1069
AflIII	ACRYGT	2 cut(s)	337, 425
AgsI	TTSAA	3 cut(s)	814, 896, 1006
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	2 cut(s)	675, 1163
AloI	GAACNNNNNNTCC	2 cut(s)	876, 908
AluBI	AGCT	6 cut(s)	194, 401, 754, 952, 1132, 1144
AluI	AGCT	6 cut(s)	194, 401, 754, 952, 1132, 1144
Alw26I	GTCTC	2 cut(s)	259, 869
AlwI	GGATC	2 cut(s)	235, 452
AlwNI	CAGNNNCTG	1 cut(s)	1247
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	2 cut(s)	597, 779
ApeKI	GCWGC	1 cut(s)	1160
ApoI	RAATTY	1 cut(s)	1013
AseI	ATTAAT	1 cut(s)	725
Asp700I	GAANNNNTTC	2 cut(s)	38, 145
AspLEI	GCGC	1 cut(s)	834
AspS9I	GGNCC	4 cut(s)	249, 356, 779, 1196
AsuHPI	GGTGA	7 cut(s)	70, 536, 629, 650, 881, 1202, 1209
AvaII	GGWCC	3 cut(s)	249, 356, 1196
AxyI	CCTNAGG	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	1172
BccI	CCATC	3 cut(s)	131, 620, 628
BciT130I	CCWGG	2 cut(s)	677, 1165
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	259, 869
BfaI	CTAG	3 cut(s)	261, 663, 1145
BfmI	CTRYAG	2 cut(s)	1200, 1248
BisI	GCNGC	3 cut(s)	600, 802, 1161
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	3 cut(s)	601, 803, 1162
BmcAI	AGTACT	1 cut(s)	1105
Bme1390I	CCNGG	2 cut(s)	677, 1165
Bme18I	GGWCC	3 cut(s)	249, 356, 1196
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	249, 356, 779, 1196
BmrFI	CCNGG	2 cut(s)	677, 1165
BmrI	ACTGGG	2 cut(s)	266, 320
BmsI	GCATC	5 cut(s)	374, 430, 631, 1063, 1228
BmuI	ACTGGG	2 cut(s)	266, 320
BpmI	CTGGAG	1 cut(s)	1133
Bpu1102I	GCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	974
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	1063, 1164
BsaWI	WCCGGW	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 521, 1069
Bse1I	ACTGG	3 cut(s)	272, 315, 471
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	3 cut(s)	660, 811, 1041
Bse8I	GATNNNNATC	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	677, 1165
BseDI	CCNNGG	2 cut(s)	1063, 1164
BseGI	GGATG	3 cut(s)	142, 209, 1078
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	55, 521, 1069
BseMI	GCAATG	3 cut(s)	660, 811, 1041
BseMII	CTCAG	6 cut(s)	104, 351, 435, 483, 485, 550
BseNI	ACTGG	3 cut(s)	272, 315, 471
BseRI	GAGGAG	1 cut(s)	859
BseXI	GCAGC	1 cut(s)	1172
BshFI	GGCC	2 cut(s)	599, 781
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	4 cut(s)	94, 254, 348, 436
BslI	CCNNNNNNNGG	3 cut(s)	55, 521, 1069
BsmAI	GTCTC	2 cut(s)	259, 869
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	4 cut(s)	94, 254, 348, 436
BsnI	GGCC	2 cut(s)	599, 781
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	199, 227, 457, 987
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	3 cut(s)	50, 600, 801
BspANI	GGCC	2 cut(s)	599, 781
BspCNI	CTCAG	6 cut(s)	103, 352, 436, 484, 484, 549
BspEI	TCCGGA	1 cut(s)	558
BspMAI	CTGCAG	2 cut(s)	1204, 1252
BspPI	GGATC	2 cut(s)	235, 452
BspQI	GCTCTTC	1 cut(s)	393
BsrDI	GCAATG	3 cut(s)	660, 811, 1041
BsrI	ACTGG	3 cut(s)	272, 315, 471
BssECI	CCNNGG	2 cut(s)	1063, 1164
BssMI	GATC	4 cut(s)	199, 227, 457, 987
Bst2UI	CCWGG	2 cut(s)	677, 1165
Bst4CI	ACNGT	4 cut(s)	356, 593, 940, 1052
Bst6I	CTCTTC	2 cut(s)	393, 867
BstAPI	GCANNNNNTGC	1 cut(s)	1247
BstC8I	GCNNGC	4 cut(s)	192, 450, 531, 660
BstDEI	CTNAG	7 cut(s)	90, 129, 360, 444, 471, 492, 536
BstDSI	CCRYGG	1 cut(s)	1063
BstF5I	GGATG	3 cut(s)	142, 209, 1078
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	4 cut(s)	202, 230, 460, 990
BstMAI	GTCTC	2 cut(s)	259, 869
BstMBI	GATC	4 cut(s)	199, 227, 457, 987
BstMWI	GCNNNNNNNGC	6 cut(s)	449, 650, 659, 1169, 1247, 1256
BstNI	CCWGG	2 cut(s)	677, 1165
BstNSI	RCATGY	2 cut(s)	429, 452
BstSCI	CCNGG	2 cut(s)	675, 1163
BstSFI	CTRYAG	2 cut(s)	1200, 1248
BstV1I	GCAGC	1 cut(s)	1172
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	599, 781
BtgI	CCRYGG	1 cut(s)	1063
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	3 cut(s)	142, 209, 1078
BtsIMutI	CAGTG	6 cut(s)	279, 308, 464, 489, 598, 834
Cac8I	GCNNGC	4 cut(s)	192, 450, 531, 660
CaiI	CAGNNNCTG	1 cut(s)	1247
CfoI	GCGC	1 cut(s)	834
Cfr13I	GGNCC	4 cut(s)	249, 356, 779, 1196
CpoI	CGGWCCG	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	1104
CspI	CGGWCCG	1 cut(s)	249
CviAII	CATG	3 cut(s)	392, 426, 449
CviQI	GTAC	1 cut(s)	1104
DdeI	CTNAG	7 cut(s)	90, 129, 360, 444, 471, 492, 536
DpnI	GATC	4 cut(s)	201, 229, 459, 989
DpnII	GATC	4 cut(s)	199, 227, 457, 987
DraI	TTTAAA	1 cut(s)	1080
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	393, 867
EarI	CTCTTC	2 cut(s)	393, 867
Eco47I	GGWCC	3 cut(s)	249, 356, 1196
Eco57I	CTGAAG	3 cut(s)	206, 807, 810
Eco81I	CCTNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	1196
EcoRII	CCWGG	2 cut(s)	675, 1163
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	3 cut(s)	395, 429, 452
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	4 cut(s)	94, 254, 348, 436
FatI	CATG	3 cut(s)	391, 425, 448
FauI	CCCGC	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	648
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	600, 802, 1161
FokI	GGATG	3 cut(s)	149, 196, 1085
Fsp4HI	GCNGC	3 cut(s)	600, 802, 1161
FspBI	CTAG	3 cut(s)	261, 663, 1145
GlaI	GCGC	1 cut(s)	833
GluI	GCNGC	3 cut(s)	600, 802, 1161
GsuI	CTGGAG	1 cut(s)	1133
HaeIII	GGCC	2 cut(s)	599, 781
HapII	CCGG	1 cut(s)	559
HhaI	GCGC	1 cut(s)	834
Hin1II	CATG	3 cut(s)	395, 429, 452
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	8 cut(s)	61, 146, 160, 404, 496, 694, 980, 1223
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	7 cut(s)	70, 536, 629, 650, 881, 1202, 1209
Hpy166II	GTNNAC	3 cut(s)	487, 547, 620
Hpy188I	TCNGA	8 cut(s)	17, 66, 136, 204, 330, 945, 985, 1096
Hpy188III	TCNNGA	7 cut(s)	197, 359, 455, 559, 977, 1021, 1112
Hpy8I	GTNNAC	3 cut(s)	487, 547, 620
HpyAV	CCTTC	5 cut(s)	166, 325, 859, 1018, 1187
HpyCH4III	ACNGT	4 cut(s)	356, 593, 940, 1052
HpyCH4IV	ACGT	2 cut(s)	37, 337
HpyCH4V	TGCA	6 cut(s)	99, 658, 1034, 1202, 1241, 1250
HpyF10VI	GCNNNNNNNGC	6 cut(s)	449, 650, 659, 1169, 1247, 1256
HpyF3I	CTNAG	7 cut(s)	90, 129, 360, 444, 471, 492, 536
HpySE526I	ACGT	2 cut(s)	37, 337
Hsp92II	CATG	3 cut(s)	395, 429, 452
HspAI	GCGC	1 cut(s)	832
Kpn2I	TCCGGA	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	199, 227, 457, 987
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	1256
Lsp1109I	GCAGC	1 cut(s)	1172
LweI	GCATC	5 cut(s)	374, 430, 631, 1063, 1228
MaeI	CTAG	3 cut(s)	261, 663, 1145
MaeII	ACGT	2 cut(s)	37, 337
MaeIII	GTNAC	3 cut(s)	695, 790, 1243
MalI	GATC	4 cut(s)	201, 229, 459, 989
MboI	GATC	4 cut(s)	199, 227, 457, 987
MboII	GAAGA	7 cut(s)	99, 181, 380, 884, 913, 922, 1247
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	5 cut(s)	100, 315, 689, 1013, 1209
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	1 cut(s)	114
MroI	TCCGGA	1 cut(s)	558
MroXI	GAANNNNTTC	2 cut(s)	38, 145
MseI	TTAA	4 cut(s)	725, 837, 1046, 1079
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	2 cut(s)	677, 1165
MvaI	CCWGG	2 cut(s)	677, 1165
MwoI	GCNNNNNNNGC	6 cut(s)	449, 650, 659, 1169, 1247, 1256
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	4 cut(s)	199, 227, 457, 987
NlaIII	CATG	3 cut(s)	395, 429, 452
NmuCI	GTSAC	1 cut(s)	695
NspI	RCATGY	2 cut(s)	429, 452
PaeI	GCATGC	1 cut(s)	452
PciI	ACATGT	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	393
PdmI	GAANNNNTTC	2 cut(s)	38, 145
PfeI	GAWTC	7 cut(s)	61, 146, 160, 404, 496, 980, 1223
PkrI	GCNGC	3 cut(s)	601, 803, 1162
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
PpuMI	RGGWCCY	1 cut(s)	1196
PscI	ACATGT	1 cut(s)	425
PshBI	ATTAAT	1 cut(s)	725
Psp1406I	AACGTT	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	1196
Psp6I	CCWGG	2 cut(s)	675, 1163
PspGI	CCWGG	2 cut(s)	675, 1163
PspPI	GGNCC	4 cut(s)	249, 356, 779, 1196
PspPPI	RGGWCCY	1 cut(s)	1196
PstI	CTGCAG	2 cut(s)	1204, 1252
PstNI	CAGNNNCTG	1 cut(s)	1247
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	1 cut(s)	1105
RsaNI	GTAC	1 cut(s)	1104
Rsr2I	CGGWCCG	1 cut(s)	249
RsrII	CGGWCCG	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	4 cut(s)	725, 837, 1046, 1079
SatI	GCNGC	3 cut(s)	600, 802, 1161
Sau3AI	GATC	4 cut(s)	199, 227, 457, 987
Sau96I	GGNCC	4 cut(s)	249, 356, 779, 1196
ScaI	AGTACT	1 cut(s)	1105
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	677, 1165
SfaNI	GCATC	5 cut(s)	374, 430, 631, 1063, 1228
SfcI	CTRYAG	2 cut(s)	1200, 1248
SinI	GGWCC	3 cut(s)	249, 356, 1196
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	5 cut(s)	100, 315, 689, 1013, 1209
SsiI	CCGC	3 cut(s)	50, 600, 801
SspI	AATATT	1 cut(s)	723
SspMI	CTAG	3 cut(s)	261, 663, 1145
StyD4I	CCNGG	2 cut(s)	675, 1163
TaaI	ACNGT	4 cut(s)	356, 593, 940, 1052
TaiI	ACGT	2 cut(s)	40, 340
TaqI	TCGA	1 cut(s)	167
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	5 cut(s)	100, 315, 689, 1013, 1209
TatI	WGTACW	1 cut(s)	1103
TauI	GCSGC	2 cut(s)	602, 804
TfiI	GAWTC	7 cut(s)	61, 146, 160, 404, 496, 980, 1223
Tru1I	TTAA	4 cut(s)	725, 837, 1046, 1079
Tru9I	TTAA	4 cut(s)	725, 837, 1046, 1079
TscAI	CASTG	6 cut(s)	279, 315, 471, 496, 598, 834
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	1 cut(s)	1160
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	3 cut(s)	47, 380, 1006
TspGWI	ACGGA	2 cut(s)	241, 1052
TspRI	CASTG	6 cut(s)	279, 315, 471, 496, 598, 834
VpaK11BI	GGWCC	3 cut(s)	249, 356, 1196
VspI	ATTAAT	1 cut(s)	725
XapI	RAATTY	1 cut(s)	1013
XceI	RCATGY	2 cut(s)	429, 452
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	2 cut(s)	38, 145
XspI	CTAG	3 cut(s)	261, 663, 1145
ZrmI	AGTACT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.