Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Reverse (-)

4500809 .. 4503334

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06450.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTGGCTTGATCGATCCGTCTCTCCTAGACAAGTCCCAGTGGTATCTACGGGTTCTTTTTCTTTGGACATGGCACTGGGAATTGGTGGATTTCCAAAGGGACGTGTTGTGGAGATATACGGTGCTGAGGCTTCTGGGAAAACTACTCTGGCTCTTCATGTAATAGCTGAAGCACAGAAGCAAGGAGGGACATGTGTTTTTGTTGACGCTGAGCATGCTCTTGATCCTACACTGGCTCAGTCTATCGGGGTAAACACTGAGAATCTACTTCTCTCACAACCTGATTCTGGTGAGCAAGCCCTCAGTCTTGTAGACACTCTAATCCGCAGTGCCTCAGTAGATGTTGTTGTTGTTGACAGTGTGGCTGCACTTGTGCCTAAAGGTGAACTTGATGGCGAGATGGGTGATGCTCATATGGCAATGCAGGCTAGACTAATGAGCCAGGCACTTCGCAAATTGAGTCACTCTTTGTCTCTATCACAGACAATATTAATCTTTACAAATCAGGTGAGGGCGAAGCTTTCTACTTTTGGAGGATTTGGTGGGCCAACTGAAGTTACTTGTGGCGGCAATGCTTTGAAGTTTTATGCTTCAGTGCGCCTTAATATGAGGAGAATAGGACTTGTGAAGAAGGGAGAAGAGACTATAGGAAGTCAAGTCCAAGTGAAGATAGTGAAGAACAAACTCGCTCCTCCATTCAGAACTGTTCAGATAGAGCTTGAGTTTGGTAAGGGTATATGTCGGGAGTCAGAGATTATTGATTTGGGATTGAAAAACAAATTCATCACAAAAGCTGGCGCAATGTACGACTTAAATGGTCAAAGTTTCCGTGGCAAGGATGCTTTGAAAAGGTTTTTGTCCGAGAATAGTACTGCTATGGAGGAACTTACAGCAAAGCTTACGGAGAAGCTAGTTGATGATGTGGCAGCCAAGGAAGCAGAAACAGAACTTATGGGCGAAGGTCCTGTAGAGGAAATTGTTTCGCCTGATTCTACTGACGATGATGCAGTTACTGCAGTTGGAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

343

Amino Acids

36.44

Weight (kDa)

5.15

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	2 cut(s)	325, 567
AclWI	GGATC	2 cut(s)	9, 218
AcsI	RAATTY	1 cut(s)	779
AcuI	CTGAAG	3 cut(s)	189, 573, 576
AfaI	GTAC	2 cut(s)	806, 871
AfiI	CCNNNNNNNGG	2 cut(s)	287, 835
AflIII	ACRYGT	2 cut(s)	103, 191
AgsI	TTSAA	3 cut(s)	580, 772, 847
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	6 cut(s)	167, 520, 718, 794, 898, 910
AluI	AGCT	6 cut(s)	167, 520, 718, 794, 898, 910
Alw26I	GTCTC	3 cut(s)	25, 477, 635
AlwI	GGATC	2 cut(s)	9, 218
AlwNI	CAGNNNCTG	1 cut(s)	1013
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	365, 926
ApoI	RAATTY	1 cut(s)	779
AseI	ATTAAT	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	600, 800
AspS9I	GGNCC	2 cut(s)	545, 962
AsuHPI	GGTGA	4 cut(s)	302, 395, 416, 520
AvaII	GGWCC	1 cut(s)	962
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	352, 938
BccI	CCATC	2 cut(s)	386, 394
BciT130I	CCWGG	1 cut(s)	443
BcoDI	GTCTC	3 cut(s)	25, 477, 635
BfaI	CTAG	3 cut(s)	27, 429, 911
BfmI	CTRYAG	3 cut(s)	645, 966, 1014
BisI	GCNGC	3 cut(s)	366, 568, 927
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	3 cut(s)	367, 569, 928
BmcAI	AGTACT	1 cut(s)	871
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	962
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	545, 962
BmrFI	CCNGG	1 cut(s)	443
BmrI	ACTGGG	2 cut(s)	32, 86
BmsI	GCATC	3 cut(s)	397, 829, 994
BmuI	ACTGGG	2 cut(s)	32, 86
Bpu10I	CCTNAGC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	740
Bsa29I	ATCGAT	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	829, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 835
Bse1I	ACTGG	3 cut(s)	38, 81, 237
Bse3DI	GCAATG	3 cut(s)	426, 577, 807
BseBI	CCWGG	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	829, 930
BseGI	GGATG	1 cut(s)	844
BseLI	CCNNNNNNNGG	2 cut(s)	287, 835
BseMI	GCAATG	3 cut(s)	426, 577, 807
BseMII	CTCAG	6 cut(s)	117, 201, 249, 251, 316, 348
BseNI	ACTGG	3 cut(s)	38, 81, 237
BseRI	GAGGAG	2 cut(s)	625, 681
BseXI	GCAGC	2 cut(s)	352, 938
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	547
BshVI	ATCGAT	1 cut(s)	13
BslFI	GGGAC	3 cut(s)	20, 114, 202
BslI	CCNNNNNNNGG	2 cut(s)	287, 835
BsmAI	GTCTC	3 cut(s)	25, 477, 635
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	3 cut(s)	20, 114, 202
BsnI	GGCC	1 cut(s)	547
Bsp143I	GATC	3 cut(s)	10, 14, 223
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	325, 567
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	6 cut(s)	118, 202, 250, 250, 315, 347
BspDI	ATCGAT	1 cut(s)	13
BspMAI	CTGCAG	1 cut(s)	1018
BspPI	GGATC	2 cut(s)	9, 218
BspQI	GCTCTTC	1 cut(s)	159
BsrDI	GCAATG	3 cut(s)	426, 577, 807
BsrI	ACTGG	3 cut(s)	38, 81, 237
BssECI	CCNNGG	2 cut(s)	829, 930
BssMI	GATC	3 cut(s)	10, 14, 223
BssT1I	CCWWGG	1 cut(s)	930
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	3 cut(s)	122, 359, 706
Bst6I	CTCTTC	2 cut(s)	159, 633
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstC8I	GCNNGC	4 cut(s)	216, 297, 426, 796
BstDEI	CTNAG	6 cut(s)	126, 210, 237, 258, 302, 334
BstDSI	CCRYGG	1 cut(s)	829
BstF5I	GGATG	1 cut(s)	844
BstHHI	GCGC	2 cut(s)	600, 800
BstKTI	GATC	3 cut(s)	13, 17, 226
BstMAI	GTCTC	3 cut(s)	25, 477, 635
BstMBI	GATC	3 cut(s)	10, 14, 223
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 416, 425, 935, 1013, 1022
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	2 cut(s)	195, 218
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	3 cut(s)	645, 966, 1014
BstV1I	GCAGC	2 cut(s)	352, 938
Bsu15I	ATCGAT	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	547
BsuTUI	ATCGAT	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	829
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	844
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	7 cut(s)	45, 74, 230, 255, 334, 364, 600
Cac8I	GCNNGC	4 cut(s)	216, 297, 426, 796
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	2 cut(s)	600, 800
Cfr13I	GGNCC	2 cut(s)	545, 962
ClaI	ATCGAT	1 cut(s)	13
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	805, 870
CviAII	CATG	4 cut(s)	70, 158, 192, 215
CviQI	GTAC	2 cut(s)	805, 870
DdeI	CTNAG	6 cut(s)	126, 210, 237, 258, 302, 334
DpnI	GATC	3 cut(s)	12, 16, 225
DpnII	GATC	3 cut(s)	10, 14, 223
Eam1104I	CTCTTC	2 cut(s)	159, 633
EarI	CTCTTC	2 cut(s)	159, 633
Eco130I	CCWWGG	1 cut(s)	930
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	3 cut(s)	189, 573, 576
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	930
ErhI	CCWWGG	1 cut(s)	930
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	4 cut(s)	73, 161, 195, 218
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	3 cut(s)	20, 114, 202
FatI	CATG	4 cut(s)	69, 157, 191, 214
FauNDI	CATATG	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	366, 568, 927
FokI	GGATG	1 cut(s)	851
Fsp4HI	GCNGC	3 cut(s)	366, 568, 927
FspBI	CTAG	3 cut(s)	27, 429, 911
GlaI	GCGC	2 cut(s)	599, 799
GluI	GCNGC	3 cut(s)	366, 568, 927
HaeIII	GGCC	1 cut(s)	547
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	600, 800
Hin1II	CATG	4 cut(s)	73, 161, 195, 218
Hin6I	GCGC	2 cut(s)	598, 798
HinP1I	GCGC	2 cut(s)	598, 798
HincII	GTYRAC	2 cut(s)	205, 355
HindII	GTYRAC	2 cut(s)	205, 355
HindIII	AAGCTT	2 cut(s)	518, 896
HinfI	GANTC	5 cut(s)	262, 284, 460, 746, 989
HphI	GGTGA	4 cut(s)	302, 395, 416, 520
Hpy166II	GTNNAC	5 cut(s)	205, 253, 313, 355, 386
Hpy188I	TCNGA	4 cut(s)	701, 711, 751, 862
Hpy188III	TCNNGA	2 cut(s)	221, 743
Hpy8I	GTNNAC	5 cut(s)	205, 253, 313, 355, 386
HpyAV	CCTTC	2 cut(s)	625, 953
HpyCH4III	ACNGT	3 cut(s)	122, 359, 706
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	368, 424, 1007, 1016
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 416, 425, 935, 1013, 1022
HpyF3I	CTNAG	6 cut(s)	126, 210, 237, 258, 302, 334
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	4 cut(s)	73, 161, 195, 218
HspAI	GCGC	2 cut(s)	598, 798
Kzo9I	GATC	3 cut(s)	10, 14, 223
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	694, 1022
Lsp1109I	GCAGC	2 cut(s)	352, 938
LweI	GCATC	3 cut(s)	397, 829, 994
MaeI	CTAG	3 cut(s)	27, 429, 911
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	3 cut(s)	461, 556, 1009
MalI	GATC	3 cut(s)	12, 16, 225
MboI	GATC	3 cut(s)	10, 14, 223
MboII	GAAGA	5 cut(s)	146, 640, 650, 679, 688
MluCI	AATT	4 cut(s)	81, 455, 779, 975
MlyI	GAGTC	2 cut(s)	469, 755
MmeI	TCCRAC	1 cut(s)	1000
MseI	TTAA	3 cut(s)	491, 603, 812
MspR9I	CCNGG	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	6 cut(s)	215, 416, 425, 935, 1013, 1022
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	3 cut(s)	10, 14, 223
NlaIII	CATG	4 cut(s)	73, 161, 195, 218
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	2 cut(s)	195, 218
PaeI	GCATGC	1 cut(s)	218
PciI	ACATGT	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	262, 284, 989
PkrI	GCNGC	3 cut(s)	367, 569, 928
PleI	GAGTC	2 cut(s)	468, 754
PpsI	GAGTC	2 cut(s)	468, 754
PpuMI	RGGWCCY	1 cut(s)	962
PscI	ACATGT	1 cut(s)	191
PshBI	ATTAAT	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	962
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	545, 962
PspPPI	RGGWCCY	1 cut(s)	962
PstI	CTGCAG	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	1013
RsaI	GTAC	2 cut(s)	806, 871
RsaNI	GTAC	2 cut(s)	805, 870
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	491, 603, 812
SatI	GCNGC	3 cut(s)	366, 568, 927
Sau3AI	GATC	3 cut(s)	10, 14, 223
Sau96I	GGNCC	2 cut(s)	545, 962
ScaI	AGTACT	1 cut(s)	871
SchI	GAGTC	2 cut(s)	469, 755
ScrFI	CCNGG	1 cut(s)	443
SfaNI	GCATC	3 cut(s)	397, 829, 994
SfcI	CTRYAG	3 cut(s)	645, 966, 1014
SinI	GGWCC	1 cut(s)	962
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	4 cut(s)	81, 455, 779, 975
SsiI	CCGC	2 cut(s)	325, 567
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	3 cut(s)	27, 429, 911
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	930
TaaI	ACNGT	3 cut(s)	122, 359, 706
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	13
TasI	AATT	4 cut(s)	81, 455, 779, 975
TatI	WGTACW	1 cut(s)	869
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	3 cut(s)	262, 284, 989
Tru1I	TTAA	3 cut(s)	491, 603, 812
Tru9I	TTAA	3 cut(s)	491, 603, 812
TscAI	CASTG	7 cut(s)	45, 81, 237, 262, 334, 364, 600
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	365, 926
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	146, 772
TspGWI	ACGGA	3 cut(s)	7, 818, 917
TspRI	CASTG	7 cut(s)	45, 81, 237, 262, 334, 364, 600
VpaK11BI	GGWCC	1 cut(s)	962
VspI	ATTAAT	1 cut(s)	491
XapI	RAATTY	1 cut(s)	779
XceI	RCATGY	2 cut(s)	195, 218
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	3 cut(s)	27, 429, 911
ZrmI	AGTACT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.