Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Reverse (-)

6538762 .. 6541659

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016421

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCGAGGCTTCTCCAAAACGCTCTCTCTATCAAACGGTTTCTATTACCGCCGCAGGGATACAGAAGTGGATTACTGGGCACTTCTTCTCAGCTTTGCAATTTTTCTTCTAAAGGTAGAAAGAAGTCCAAGTCTGATGGAAGTGACTCGGGCGGAGAGAATATGTCCAAGAAGGATTTAGCTCTCCAGCAAGCACTTGATCAGATTACGGATTCTTTTGGAAAGGGCTCTATAATGTGGCTTGGTCGGTCTGGCGCTCCCAGAAATGTTGAGGTTGTATCCACAGGATCTTTTTCTCTGGATTTGGCACTGGGAACCGGTGGCCTTCCAAAGGGACGTGTTGTGGAGATTTATGGTCCTGAGGCTTCTGGGAAAACTACTCTCGCTTTACATGTAATAGCTGAAGCACAGAAACAAGGAGGTTACTGTGTTTTTGTTGATGCTGAGCATGCTCTTGATCCTACACTGGCTCAGGCGATCGGGGTAAAGACCGAGAATCTACTTCTATCACAACCTGATTGTGGAGAGCAAGCCCTAAGTCTTGTAGACACTCTAATCAGGAGTGGTTCAGTTGATGTTGTTGTTGTTGACAGTGTGGCTGCCCTAGTGCCTAAAGGCGAACTTGATGGGGAGATGGGTGATGCTCATATGGCAATGCAGGCTAGGTTAATGAGTCAGGCGCTTCGGAAATTAAGTCACTCTTTATCTCTATCCCAGACAATATTAATCTTTACAAATCAGGTCAGGGCTAAGCTTTCGACTTTTGGAGGATTTGGTGGGCCTCAAGAAGTTACTTGTGGTGGCAATGCTTTGAAGTTCTATGCCTCAGTCCGCCTTAATGTTAGGAGAATAGGGCTTATCAAGAAGGGTGAAGAGACGGTAGGGAGTCAAGTTCAAGTGAAGATAGTGAAGAACAAGCTCGCTCCACCATTTAGAACTGTTCTGTTGGAGCTCGAGTTTGGGAAGGGTTTATGTCGTGAATCGGAGCTCATCGACTTGGGATTAAAAAACAAATTCATCATAAAAAGTGGTTCACATTATAATTTAAACGGTCAAAACTTTCATGGCAAAGATGCTTTGAAAAGGTTTTTGTCTGAGGATGATGCTGCTAGGGAAGAACTCGCGTTGAAGTTGAGGGAGAAGCTAGTTGATGCTGTGGAACACAAGGAAGCAGAAACAGAAGCTTTGAATGAAAGTCCAACTGAGGAAATTGTTTCACCAGATTCTACTGATGAAGATGCAGTTACAGCAGTTGGAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

421

Amino Acids

44.97

Weight (kDa)

6.43

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	61 - 324	5.2e-117	RecA N-terminal domain
Rad51	PF08423	91 - 283	3.7e-10	Rad51
ATPase	PF06745	94 - 150	1.9e-06	KaiC
RecA_C	PF21096	329 - 382	3.5e-08	RecA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1041
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	1124
AciI	CCGC	4 cut(s)	50, 53, 153, 832
AclWI	GGATC	2 cut(s)	295, 452
AcsI	RAATTY	1 cut(s)	1013
AcuI	CTGAAG	1 cut(s)	423
AfiI	CCNNNNNNNGG	3 cut(s)	56, 331, 521
AflIII	ACRYGT	2 cut(s)	337, 391
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	5 cut(s)	814, 896, 1081, 1129, 1189
AjiI	CACGTC	1 cut(s)	338
AluBI	AGCT	9 cut(s)	94, 182, 401, 754, 919, 952, 988, 1144, 1184
AluI	AGCT	9 cut(s)	94, 182, 401, 754, 919, 952, 988, 1144, 1184
Alw21I	GWGCWC	2 cut(s)	954, 990
Alw26I	GTCTC	1 cut(s)	869
AlwI	GGATC	2 cut(s)	295, 452
Ama87I	CYCGRG	2 cut(s)	148, 953
AoxI	GGCC	2 cut(s)	322, 779
ApeKI	GCWGC	2 cut(s)	599, 1106
ApoI	RAATTY	1 cut(s)	1013
AseI	ATTAAT	1 cut(s)	725
AsiGI	ACCGGT	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	257, 682
AspS9I	GGNCC	2 cut(s)	356, 779
AsuHPI	GGTGA	3 cut(s)	650, 881, 1209
AvaI	CYCGRG	2 cut(s)	148, 953
AvaII	GGWCC	1 cut(s)	356
AxyI	CCTNAGG	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	83
BaeI	ACNNNNGTAYC	2 cut(s)	52, 85
BanII	GRGCYC	3 cut(s)	230, 954, 990
Bbv12I	GWGCWC	2 cut(s)	954, 990
BbvI	GCAGC	2 cut(s)	586, 1093
BccI	CCATC	3 cut(s)	131, 620, 628
BciVI	GTATCC	2 cut(s)	53, 289
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	869
BfaI	CTAG	4 cut(s)	605, 663, 1110, 1145
BfoI	RGCGCY	2 cut(s)	258, 683
BfuI	GTATCC	2 cut(s)	53, 289
BisI	GCNGC	3 cut(s)	53, 600, 1107
BlpI	GCTNAGC	2 cut(s)	444, 750
BlsI	GCNGC	3 cut(s)	54, 601, 1108
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	2 cut(s)	148, 953
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	356, 779
BmiI	GGNNCC	1 cut(s)	316
BmrI	ACTGGG	2 cut(s)	86, 320
BmsI	GCATC	6 cut(s)	430, 631, 1063, 1093, 1141, 1228
BmuI	ACTGGG	2 cut(s)	86, 320
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu1102I	GCTNAGC	2 cut(s)	444, 750
BpuEI	CTTGAG	1 cut(s)	768
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	941, 971
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 331, 521
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	3 cut(s)	81, 315, 471
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	2 cut(s)	660, 811
BseGI	GGATG	1 cut(s)	1105
BseLI	CCNNNNNNNGG	3 cut(s)	56, 331, 521
BseMI	GCAATG	2 cut(s)	660, 811
BseMII	CTCAG	7 cut(s)	104, 351, 435, 485, 840, 1086, 1194
BseNI	ACTGG	3 cut(s)	81, 315, 471
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	586, 1093
Bsh1236I	CGCG	1 cut(s)	1124
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	324, 781
BshTI	ACCGGT	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	480
BsiHKAI	GWGCWC	2 cut(s)	954, 990
BsiHKCI	CYCGRG	2 cut(s)	148, 953
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	3 cut(s)	56, 331, 521
BsmAI	GTCTC	1 cut(s)	869
BsmBI	CGTCTC	1 cut(s)	869
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	324, 781
BsoBI	CYCGRG	2 cut(s)	148, 953
Bsp1286I	GDGCHC	4 cut(s)	83, 230, 954, 990
Bsp143I	GATC	4 cut(s)	199, 287, 457, 477
Bsp1720I	GCTNAGC	2 cut(s)	444, 750
BspACI	CCGC	4 cut(s)	50, 53, 153, 832
BspANI	GGCC	2 cut(s)	324, 781
BspCNI	CTCAG	7 cut(s)	103, 352, 436, 484, 839, 1087, 1195
BspFNI	CGCG	1 cut(s)	1124
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	295, 452
BsrDI	GCAATG	2 cut(s)	660, 811
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	81, 315, 471
BssAI	RCCGGY	1 cut(s)	317
BssMI	GATC	4 cut(s)	199, 287, 457, 477
Bst4CI	ACNGT	6 cut(s)	39, 428, 593, 880, 940, 1052
Bst6I	CTCTTC	1 cut(s)	867
BstC8I	GCNNGC	5 cut(s)	192, 450, 531, 660, 921
BstDEI	CTNAG	9 cut(s)	90, 360, 444, 471, 536, 750, 826, 1095, 1203
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	1105
BstFNI	CGCG	1 cut(s)	1124
BstH2I	RGCGCY	2 cut(s)	258, 683
BstHHI	GCGC	2 cut(s)	257, 682
BstKTI	GATC	4 cut(s)	202, 290, 460, 480
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	4 cut(s)	199, 287, 457, 477
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	5 cut(s)	449, 650, 659, 1247, 1256
BstNSI	RCATGY	2 cut(s)	395, 452
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	1 cut(s)	1124
BstV1I	GCAGC	2 cut(s)	586, 1093
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	360
BsuI	GTATCC	2 cut(s)	53, 289
BsuRI	GGCC	2 cut(s)	324, 781
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	1105
BtsIMutI	CAGTG	3 cut(s)	308, 464, 598
Cac8I	GCNNGC	5 cut(s)	192, 450, 531, 660, 921
CfoI	GCGC	2 cut(s)	257, 682
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	356, 779
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	3 cut(s)	392, 449, 1064
DdeI	CTNAG	9 cut(s)	90, 360, 444, 471, 536, 750, 826, 1095, 1203
DpnI	GATC	4 cut(s)	201, 289, 459, 479
DpnII	GATC	4 cut(s)	199, 287, 457, 477
DraI	TTTAAA	1 cut(s)	1047
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
EciI	GGCGGA	2 cut(s)	168, 821
Ecl136II	GAGCTC	2 cut(s)	952, 988
Eco24I	GRGCYC	3 cut(s)	230, 954, 990
Eco47I	GGWCC	1 cut(s)	356
Eco53kI	GAGCTC	2 cut(s)	952, 988
Eco57I	CTGAAG	1 cut(s)	423
Eco81I	CCTNAGG	1 cut(s)	360
Eco88I	CYCGRG	2 cut(s)	148, 953
EcoICRI	GAGCTC	2 cut(s)	952, 988
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoT38I	GRGCYC	3 cut(s)	230, 954, 990
Esp3I	CGTCTC	1 cut(s)	869
FaeI	CATG	3 cut(s)	395, 452, 1067
FalI	AAGNNNNNCTT	4 cut(s)	606, 638, 685, 717
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	391, 448, 1063
FauNDI	CATATG	1 cut(s)	648
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	53, 600, 1107
FokI	GGATG	1 cut(s)	1112
FriOI	GRGCYC	3 cut(s)	230, 954, 990
Fsp4HI	GCNGC	3 cut(s)	53, 600, 1107
FspBI	CTAG	4 cut(s)	605, 663, 1110, 1145
GlaI	GCGC	2 cut(s)	256, 681
GluI	GCNGC	3 cut(s)	53, 600, 1107
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	2 cut(s)	258, 683
HaeIII	GGCC	2 cut(s)	324, 781
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	2 cut(s)	257, 682
Hin1II	CATG	3 cut(s)	395, 452, 1067
Hin6I	GCGC	2 cut(s)	255, 680
HinP1I	GCGC	2 cut(s)	255, 680
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	2 cut(s)	752, 1182
HinfI	GANTC	7 cut(s)	146, 212, 496, 673, 886, 980, 1223
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	650, 881, 1209
Hpy166II	GTNNAC	3 cut(s)	547, 589, 1034
Hpy188I	TCNGA	5 cut(s)	136, 204, 687, 985, 1096
Hpy188III	TCNNGA	7 cut(s)	299, 359, 455, 559, 785, 862, 977
Hpy8I	GTNNAC	3 cut(s)	547, 589, 1034
HpyAV	CCTTC	4 cut(s)	166, 335, 859, 958
HpyCH4III	ACNGT	6 cut(s)	39, 428, 593, 880, 940, 1052
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	3 cut(s)	99, 658, 1241
HpyF10VI	GCNNNNNNNGC	5 cut(s)	449, 650, 659, 1247, 1256
HpyF3I	CTNAG	9 cut(s)	90, 360, 444, 471, 536, 750, 826, 1095, 1203
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	395, 452, 1067
HspAI	GCGC	2 cut(s)	255, 680
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	199, 287, 457, 477
LmnI	GCTCC	5 cut(s)	262, 928, 949, 985, 1256
Lsp1109I	GCAGC	2 cut(s)	586, 1093
LweI	GCATC	6 cut(s)	430, 631, 1063, 1093, 1141, 1228
MaeI	CTAG	4 cut(s)	605, 663, 1110, 1145
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	5 cut(s)	143, 422, 695, 790, 1243
MalI	GATC	4 cut(s)	201, 289, 459, 479
MboI	GATC	4 cut(s)	199, 287, 457, 477
MboII	GAAGA	7 cut(s)	78, 99, 884, 913, 922, 1127, 1247
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	4 cut(s)	83, 230, 954, 990
MluCI	AATT	5 cut(s)	100, 689, 1013, 1042, 1209
MlyI	GAGTC	3 cut(s)	140, 682, 895
MmeI	TCCRAC	3 cut(s)	927, 1223, 1234
MnlI	CCTC	9 cut(s)	265, 355, 413, 761, 792, 835, 1090, 1128, 1198
MseI	TTAA	6 cut(s)	668, 692, 725, 837, 1004, 1046
MspI	CCGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	1124
MwoI	GCNNNNNNNGC	5 cut(s)	449, 650, 659, 1247, 1256
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	4 cut(s)	199, 287, 457, 477
NlaIII	CATG	3 cut(s)	395, 452, 1067
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	143, 695
NspI	RCATGY	2 cut(s)	395, 452
PaeI	GCATGC	1 cut(s)	452
PaeR7I	CTCGAG	1 cut(s)	953
PciI	ACATGT	1 cut(s)	391
PfeI	GAWTC	4 cut(s)	212, 496, 980, 1223
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	54, 601, 1108
Ple19I	CGATCG	1 cut(s)	480
PleI	GAGTC	3 cut(s)	140, 681, 894
PpsI	GAGTC	3 cut(s)	140, 681, 894
PscI	ACATGT	1 cut(s)	391
PshBI	ATTAAT	1 cut(s)	725
PsiI	TTATAA	1 cut(s)	1041
Psp124BI	GAGCTC	2 cut(s)	954, 990
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	356, 779
PspXI	VCTCGAGB	1 cut(s)	953
PsuI	RGATCY	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	480
SacI	GAGCTC	2 cut(s)	954, 990
SaqAI	TTAA	6 cut(s)	668, 692, 725, 837, 1004, 1046
SatI	GCNGC	3 cut(s)	53, 600, 1107
Sau3AI	GATC	4 cut(s)	199, 287, 457, 477
Sau96I	GGNCC	2 cut(s)	356, 779
SchI	GAGTC	3 cut(s)	140, 682, 895
SduI	GDGCHC	4 cut(s)	83, 230, 954, 990
SfaNI	GCATC	6 cut(s)	430, 631, 1063, 1093, 1141, 1228
Sfr274I	CTCGAG	1 cut(s)	953
SinI	GGWCC	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	953
SmlI	CTYRAG	2 cut(s)	783, 953
SmoI	CTYRAG	2 cut(s)	783, 953
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	5 cut(s)	100, 689, 1013, 1042, 1209
SsiI	CCGC	4 cut(s)	50, 53, 153, 832
SspI	AATATT	1 cut(s)	723
SspMI	CTAG	4 cut(s)	605, 663, 1110, 1145
SstI	GAGCTC	2 cut(s)	954, 990
TaaI	ACNGT	6 cut(s)	39, 428, 593, 880, 940, 1052
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	758, 954, 993
TaqII	GACCGA	2 cut(s)	237, 506
TasI	AATT	5 cut(s)	100, 689, 1013, 1042, 1209
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	4 cut(s)	212, 496, 980, 1223
Tru1I	TTAA	6 cut(s)	668, 692, 725, 837, 1004, 1046
Tru9I	TTAA	6 cut(s)	668, 692, 725, 837, 1004, 1046
TscAI	CASTG	3 cut(s)	315, 471, 598
TseFI	GTSAC	2 cut(s)	143, 695
TseI	GCWGC	2 cut(s)	599, 1106
Tsp45I	GTSAC	2 cut(s)	143, 695
TspDTI	ATGAA	4 cut(s)	1006, 1052, 1206, 1248
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	3 cut(s)	315, 471, 598
VpaK11BI	GGWCC	1 cut(s)	356
VspI	ATTAAT	1 cut(s)	725
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	1013
XceI	RCATGY	2 cut(s)	395, 452
XhoI	CTCGAG	1 cut(s)	953
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	4 cut(s)	605, 663, 1110, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.