Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002126.1

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Forward (+)

102759 .. 105840

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002126.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

atggcgaggcttctccaaaacgctctctctatcaaacgctttctattaccgccgcagggatatagaagtggattactgggcacttcttctcagctttgcagtttttcttctaaaggtagaaagaagtccaagtctgatggaagtgactcgggcggagagaatatgtccaagaaggatttagctctccagcaagcacttgatcagattacggattcttttggaaagggttctataatgtggcttggtcggtctggggctcccagacatgttgaggttgtctccacaggatctttttctctggatctggcactgggaaccggtggctttcctaagggacgtgttgtggagatttatggtcctgaggcttctgggaaaactactctcgctctacatgtaatagctgaagcacagaaacaaggaggtaacactgaggaactaccattgttggttaatggtgttccttggttaatgccacttcatgtaggttattgtgtttttgttgatgctgagcatgcccttgatcctacactggctcaggcgattggggtaaagaccgagaatctacttctatcgcaacctgattgtggagagcaagccctaacatctatttatgttgacaaacttataattttgtatagggaactaccattgttggttaatggtgttccttggttaatgccacttcatgtaggttactgtgtttttgttgatgctgagcatgctcttgatcctacactggctcaggcgattggggtaaagaccgagaatctacttctatcgcaacctgattgtggagagcaagccctcagtcttgtggacactctaatcaggagtggttcagttgatgttgttgttgttgacagtgtggctgccttagtgcctaaaggcgaacttgatggggagatgggtgatgctcatatggcaatgcaggctaggttaatgagtcaggcgcttcggaaattaagtcactctttatctctatcccagtcaatattaatctttacaaatcaggtcagggctaagctttcgacttttggaggatttggtgggcctcaagaagttacttgtggtggcaatgctttgaagttctatgcctcagtccgccttaatgttaggagaatagggcttatcaagaagggtgaagagacggtagggagtcaagttcaagtgaagatagtgaagaacaagcttgctccaccatttagaactgttctgttggagctcgagtttgggaagggtttatgtcgtgaatcggagctcatcgacttgggattaaaaaacaaattcatcataaaaagtggttcacattataatttaaatggccaaaactttcatggcaaagatgctttgaaaaggtttttgtctgaggatgatgctgctagggaagaacttgcattgaagttgagggagaagctagttgatgctgtggaacacaaggaagcagacacagaagctttaaatgatagtccaactgaggaaattgtttcaccagattctactgatgaagatgcagctacagcagttggagcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

510

Amino Acids

54.84

Weight (kDa)

5.75

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	626, 1311
AciI	CCGC	4 cut(s)	50, 53, 153, 1102
AclWI	GGATC	4 cut(s)	295, 309, 515, 722
AcoI	YGGCCR	1 cut(s)	1321
AcsI	RAATTY	1 cut(s)	1283
AcuI	CTGAAG	1 cut(s)	423
AfiI	CCNNNNNNNGG	3 cut(s)	56, 584, 791
AflIII	ACRYGT	3 cut(s)	265, 337, 391
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	4 cut(s)	1084, 1166, 1351, 1399
AjiI	CACGTC	1 cut(s)	338
Alw21I	GWGCWC	2 cut(s)	1224, 1260
Alw26I	GTCTC	2 cut(s)	283, 1139
AlwI	GGATC	4 cut(s)	295, 309, 515, 722
Ama87I	CYCGRG	2 cut(s)	148, 1223
AoxI	GGCC	2 cut(s)	1049, 1321
ApeKI	GCWGC	3 cut(s)	869, 1376, 1511
ApoI	RAATTY	1 cut(s)	1283
AseI	ATTAAT	1 cut(s)	995
AsiGI	ACCGGT	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	952
AspS9I	GGNCC	2 cut(s)	356, 1049
AsuHPI	GGTGA	3 cut(s)	920, 1151, 1479
AvaI	CYCGRG	2 cut(s)	148, 1223
AvaII	GGWCC	1 cut(s)	356
AxyI	CCTNAGG	2 cut(s)	330, 360
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	1323
BanII	GRGCYC	3 cut(s)	259, 1224, 1260
Bbv12I	GWGCWC	2 cut(s)	1224, 1260
BbvI	GCAGC	3 cut(s)	856, 1363, 1523
BccI	CCATC	3 cut(s)	131, 890, 898
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	283, 1139
BfaI	CTAG	3 cut(s)	933, 1380, 1415
BfmI	CTRYAG	1 cut(s)	1515
BfoI	RGCGCY	1 cut(s)	953
BisI	GCNGC	4 cut(s)	53, 870, 1377, 1512
BlpI	GCTNAGC	3 cut(s)	507, 714, 1020
BlsI	GCNGC	4 cut(s)	54, 871, 1378, 1513
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	2 cut(s)	148, 1223
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	356, 1049
BmiI	GGNNCC	2 cut(s)	258, 316
BmrI	ACTGGG	3 cut(s)	86, 320, 979
BmsI	GCATC	7 cut(s)	493, 700, 901, 1333, 1363, 1411, 1498
BmuI	ACTGGG	3 cut(s)	86, 320, 979
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	2 cut(s)	534, 741
Bpu1102I	GCTNAGC	3 cut(s)	507, 714, 1020
BpuEI	CTTGAG	1 cut(s)	1038
BsaJI	CCNNGG	2 cut(s)	461, 668
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	1211, 1241
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 584, 791
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	5 cut(s)	81, 315, 534, 741, 985
Bse21I	CCTNAGG	2 cut(s)	330, 360
Bse3DI	GCAATG	2 cut(s)	930, 1081
BseDI	CCNNGG	2 cut(s)	461, 668
BseGI	GGATG	1 cut(s)	1375
BseLI	CCNNNNNNNGG	3 cut(s)	56, 584, 791
BseMI	GCAATG	2 cut(s)	930, 1081
BseNI	ACTGG	5 cut(s)	81, 315, 534, 741, 985
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	856, 1363, 1523
BshFI	GGCC	2 cut(s)	1051, 1323
BshTI	ACCGGT	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	1224, 1260
BsiHKCI	CYCGRG	2 cut(s)	148, 1223
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	3 cut(s)	56, 584, 791
BsmAI	GTCTC	2 cut(s)	283, 1139
BsmBI	CGTCTC	1 cut(s)	1139
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	1051, 1323
BsoBI	CYCGRG	2 cut(s)	148, 1223
Bsp1286I	GDGCHC	4 cut(s)	83, 259, 1224, 1260
Bsp143I	GATC	5 cut(s)	199, 287, 301, 520, 727
Bsp1720I	GCTNAGC	3 cut(s)	507, 714, 1020
BspACI	CCGC	4 cut(s)	50, 53, 153, 1102
BspANI	GGCC	2 cut(s)	1051, 1323
BspLI	GGNNCC	2 cut(s)	258, 316
BspPI	GGATC	4 cut(s)	295, 309, 515, 722
BsrDI	GCAATG	2 cut(s)	930, 1081
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	5 cut(s)	81, 315, 534, 741, 985
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	461, 668
BssMI	GATC	5 cut(s)	199, 287, 301, 520, 727
BssT1I	CCWWGG	2 cut(s)	461, 668
Bst4CI	ACNGT	4 cut(s)	698, 863, 1150, 1210
Bst6I	CTCTTC	1 cut(s)	1137
BstC8I	GCNNGC	7 cut(s)	192, 513, 594, 720, 801, 930, 1191
BstF5I	GGATG	1 cut(s)	1375
BstH2I	RGCGCY	1 cut(s)	953
BstHHI	GCGC	1 cut(s)	952
BstKTI	GATC	5 cut(s)	202, 290, 304, 523, 730
BstMAI	GTCTC	2 cut(s)	283, 1139
BstMBI	GATC	5 cut(s)	199, 287, 301, 520, 727
BstMWI	GCNNNNNNNGC	6 cut(s)	512, 719, 920, 929, 1517, 1526
BstNSI	RCATGY	4 cut(s)	269, 395, 515, 722
BstSFI	CTRYAG	1 cut(s)	1515
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	856, 1363, 1523
BstX2I	RGATCY	2 cut(s)	287, 301
BstYI	RGATCY	2 cut(s)	287, 301
Bsu36I	CCTNAGG	2 cut(s)	330, 360
BsuRI	GGCC	2 cut(s)	1051, 1323
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	1375
BtsIMutI	CAGTG	5 cut(s)	308, 426, 527, 734, 868
Cac8I	GCNNGC	7 cut(s)	192, 513, 594, 720, 801, 930, 1191
CfoI	GCGC	1 cut(s)	952
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	356, 1049
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	7 cut(s)	266, 392, 479, 512, 686, 719, 1334
DpnI	GATC	5 cut(s)	201, 289, 303, 522, 729
DpnII	GATC	5 cut(s)	199, 287, 301, 520, 727
DraI	TTTAAA	2 cut(s)	1317, 1458
EaeI	YGGCCR	1 cut(s)	1321
Eam1104I	CTCTTC	1 cut(s)	1137
EarI	CTCTTC	1 cut(s)	1137
EciI	GGCGGA	2 cut(s)	168, 1091
Ecl136II	GAGCTC	2 cut(s)	1222, 1258
Eco130I	CCWWGG	2 cut(s)	461, 668
Eco24I	GRGCYC	3 cut(s)	259, 1224, 1260
Eco47I	GGWCC	1 cut(s)	356
Eco53kI	GAGCTC	2 cut(s)	1222, 1258
Eco57I	CTGAAG	1 cut(s)	423
Eco81I	CCTNAGG	2 cut(s)	330, 360
Eco88I	CYCGRG	2 cut(s)	148, 1223
EcoICRI	GAGCTC	2 cut(s)	1222, 1258
EcoT14I	CCWWGG	2 cut(s)	461, 668
EcoT38I	GRGCYC	3 cut(s)	259, 1224, 1260
ErhI	CCWWGG	2 cut(s)	461, 668
Esp3I	CGTCTC	1 cut(s)	1139
FaeI	CATG	7 cut(s)	269, 395, 482, 515, 689, 722, 1337
FalI	AAGNNNNNCTT	4 cut(s)	876, 908, 955, 987
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	7 cut(s)	265, 391, 478, 511, 685, 718, 1333
FauNDI	CATATG	1 cut(s)	918
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	53, 870, 1377, 1512
FokI	GGATG	1 cut(s)	1382
FriOI	GRGCYC	3 cut(s)	259, 1224, 1260
Fsp4HI	GCNGC	4 cut(s)	53, 870, 1377, 1512
FspBI	CTAG	3 cut(s)	933, 1380, 1415
GlaI	GCGC	1 cut(s)	951
GluI	GCNGC	4 cut(s)	53, 870, 1377, 1512
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	953
HaeIII	GGCC	2 cut(s)	1051, 1323
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	952
Hin1II	CATG	7 cut(s)	269, 395, 482, 515, 689, 722, 1337
Hin6I	GCGC	1 cut(s)	950
HinP1I	GCGC	1 cut(s)	950
HincII	GTYRAC	2 cut(s)	616, 859
HindII	GTYRAC	2 cut(s)	616, 859
HindIII	AAGCTT	3 cut(s)	1022, 1187, 1452
HinfI	GANTC	8 cut(s)	146, 212, 559, 766, 943, 1156, 1250, 1493
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	920, 1151, 1479
Hpy166II	GTNNAC	4 cut(s)	616, 817, 859, 1304
Hpy188I	TCNGA	5 cut(s)	136, 204, 957, 1255, 1366
Hpy188III	TCNNGA	7 cut(s)	299, 359, 725, 829, 1055, 1132, 1247
Hpy8I	GTNNAC	4 cut(s)	616, 817, 859, 1304
HpyAV	CCTTC	3 cut(s)	166, 1129, 1228
HpyCH4III	ACNGT	4 cut(s)	698, 863, 1150, 1210
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	4 cut(s)	99, 928, 1394, 1511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	512, 719, 920, 929, 1517, 1526
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	7 cut(s)	269, 395, 482, 515, 689, 722, 1337
HspAI	GCGC	1 cut(s)	950
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	199, 287, 301, 520, 727
LmnI	GCTCC	5 cut(s)	262, 1198, 1219, 1255, 1526
Lsp1109I	GCAGC	3 cut(s)	856, 1363, 1523
LweI	GCATC	7 cut(s)	493, 700, 901, 1333, 1363, 1411, 1498
MaeI	CTAG	3 cut(s)	933, 1380, 1415
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	5 cut(s)	143, 422, 692, 965, 1060
MalI	GATC	5 cut(s)	201, 289, 303, 522, 729
MboI	GATC	5 cut(s)	199, 287, 301, 520, 727
MboII	GAAGA	7 cut(s)	78, 99, 1154, 1183, 1192, 1397, 1517
MflI	RGATCY	2 cut(s)	287, 301
MhlI	GDGCHC	4 cut(s)	83, 259, 1224, 1260
MlsI	TGGCCA	1 cut(s)	1323
MluCI	AATT	5 cut(s)	627, 959, 1283, 1312, 1479
MluNI	TGGCCA	1 cut(s)	1323
MlyI	GAGTC	3 cut(s)	140, 952, 1165
MmeI	TCCRAC	3 cut(s)	1197, 1493, 1504
Mox20I	TGGCCA	1 cut(s)	1323
MroXI	GAANNNNTTC	1 cut(s)	226
MscI	TGGCCA	1 cut(s)	1323
Msp20I	TGGCCA	1 cut(s)	1323
MspI	CCGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	6 cut(s)	512, 719, 920, 929, 1517, 1526
NdeI	CATATG	1 cut(s)	918
NdeII	GATC	5 cut(s)	199, 287, 301, 520, 727
NlaIII	CATG	7 cut(s)	269, 395, 482, 515, 689, 722, 1337
NlaIV	GGNNCC	2 cut(s)	258, 316
NmuCI	GTSAC	2 cut(s)	143, 965
NspI	RCATGY	4 cut(s)	269, 395, 515, 722
PaeI	GCATGC	2 cut(s)	515, 722
PaeR7I	CTCGAG	1 cut(s)	1223
PciI	ACATGT	2 cut(s)	265, 391
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	5 cut(s)	212, 559, 766, 1250, 1493
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	54, 871, 1378, 1513
PleI	GAGTC	3 cut(s)	140, 951, 1164
PpsI	GAGTC	3 cut(s)	140, 951, 1164
PscI	ACATGT	2 cut(s)	265, 391
PshBI	ATTAAT	1 cut(s)	995
PsiI	TTATAA	2 cut(s)	626, 1311
Psp124BI	GAGCTC	2 cut(s)	1224, 1260
PspN4I	GGNNCC	2 cut(s)	258, 316
PspPI	GGNCC	2 cut(s)	356, 1049
PspXI	VCTCGAGB	1 cut(s)	1223
PsuI	RGATCY	2 cut(s)	287, 301
SacI	GAGCTC	2 cut(s)	1224, 1260
SatI	GCNGC	4 cut(s)	53, 870, 1377, 1512
Sau3AI	GATC	5 cut(s)	199, 287, 301, 520, 727
Sau96I	GGNCC	2 cut(s)	356, 1049
SchI	GAGTC	3 cut(s)	140, 952, 1165
SduI	GDGCHC	4 cut(s)	83, 259, 1224, 1260
SfaNI	GCATC	7 cut(s)	493, 700, 901, 1333, 1363, 1411, 1498
SfcI	CTRYAG	1 cut(s)	1515
Sfr274I	CTCGAG	1 cut(s)	1223
SinI	GGWCC	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	1223
SmiI	ATTTAAAT	1 cut(s)	1317
SmlI	CTYRAG	2 cut(s)	1053, 1223
SmoI	CTYRAG	2 cut(s)	1053, 1223
SphI	GCATGC	2 cut(s)	515, 722
Sse9I	AATT	5 cut(s)	627, 959, 1283, 1312, 1479
SsiI	CCGC	4 cut(s)	50, 53, 153, 1102
SspI	AATATT	1 cut(s)	993
SspMI	CTAG	3 cut(s)	933, 1380, 1415
SstI	GAGCTC	2 cut(s)	1224, 1260
StyI	CCWWGG	2 cut(s)	461, 668
SwaI	ATTTAAAT	1 cut(s)	1317
TaaI	ACNGT	4 cut(s)	698, 863, 1150, 1210
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	1028, 1224, 1263
TaqII	GACCGA	3 cut(s)	237, 569, 776
TasI	AATT	5 cut(s)	627, 959, 1283, 1312, 1479
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	5 cut(s)	212, 559, 766, 1250, 1493
TscAI	CASTG	5 cut(s)	315, 433, 534, 741, 868
TseFI	GTSAC	2 cut(s)	143, 965
TseI	GCWGC	3 cut(s)	869, 1376, 1511
Tsp45I	GTSAC	2 cut(s)	143, 965
TspDTI	ATGAA	5 cut(s)	467, 674, 1276, 1322, 1518
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	5 cut(s)	315, 433, 534, 741, 868
VpaK11BI	GGWCC	1 cut(s)	356
VspI	ATTAAT	1 cut(s)	995
XapI	RAATTY	1 cut(s)	1283
XceI	RCATGY	4 cut(s)	269, 395, 515, 722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1331
XhoI	CTCGAG	1 cut(s)	1223
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	3 cut(s)	933, 1380, 1415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.