Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Reverse (-)

4098128 .. 4101563

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07730.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCGAGGCTTCTCCAGAACGCTCTCTCCATGAAACGCTTTCTTTTACCGCCGCAGGGATACAGAAGAGGATTACTAAGCAGTTCTTCTCAGTTCTGCAATTTTTCTACTAAAGGTAAGAAGAAGTCAAAGTCTGATGGAAGTGACTCGGGCGGAGAGAATATGTCCAAGAAGGATTTGGCTCTCCAGCAAGCACTTGATCAGATTACGGAGTCTTTTGGAAAGGGCTCTATAATGTGGCTTGGTCGCTCTAGCGGTCCAAGAAATGTTGAGGTTGTATCCACGGGGTCTTTTTCTCTGGATCTAGCGCTGGGAACTGGTGGCTTTCCAAAGGGACGTGTTGTGGAGATTTACGGTCCTGAGGCTTCTGGGAAAACTACTCTCGCTCTACATGCGATAGCTGAAGCACAGAAACAAGGAGGTTACTGTGTTTTTGTTGATGCCGAGCATGCTCTTGATCCTACACTGGCTCAGCGGATTGGGGTAAAGACTGAGAATCTACTTCTATCGCAACCTGATTGTGGAGAGCAGGCCCTCAGTCTTGTAGACACTCTAATCAGGAGTGGTTCAGTTGATGTTGTTGTTGTTGACAGTGTGGCCGCCCTTGTGCCTAAAGGTGAACTTGATGGGGAGATGGGTGATGCTCATATGGCAATGCAGGCTCGGTTAATGAGTCAGGCGCTTCGCAAATTAAGTCACTCTTTATCTCTATCCAAGACAATATTAATCTTTACAAATCAGGTCAGGTCTAAGCTTTCAACTTTTGGAGGATTTGGTGGACCTCAAGAAGTTACATGTGGTGGCAATGCTTTGAAGTTCTATGCCTCAGTCCGCCTTAATATTAGGAGAGTAGGTTCTATCAAGAAGGGTGAGGAGATAGTAGGGAGTCAAGTTCAAGTGAAGATAGTGAAAAACAAGCTCGCTCCACCATTTAGAAATGTTCTGTTAGAGCTTGAGTTTGGCAAGGGTTTTAGTCGTGAATCAGAGCTCATCGAGTTGGGATTAAAAAACAAATTCATCATAAAAGGTGGTTCACATTATAATTTAAATGGTCAAAACTTCCATGGCAAAGATGCTTTGAAAAGGTTTTTGTCAGAGGATGACACTGCTAGGGAAGAACTCACATTGAAGTTGAGGGAGAAGCTAGTTGATGCTCTGGAAGACAAGGATCCCGAAACAGAACCTTTGGATGAAAGTTCAACTGAGGAAATTGTTTCACCAGATTCTACTGATGAAGATGCGGTTACAGCAGTTGGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

421

Amino Acids

45.37

Weight (kDa)

6.38

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	61 - 328	9.7e-116	RecA N-terminal domain
Rad51	PF08423	91 - 287	1.2e-09	Rad51
ATPase	PF06745	94 - 150	1.6e-06	KaiC
RecA_C	PF21096	332 - 385	2.9e-06	RecA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1041
AccI	GTMKAC	1 cut(s)	546
AciI	CCGC	8 cut(s)	50, 53, 153, 255, 475, 600, 832, 1241
AclWI	GGATC	4 cut(s)	309, 452, 1163, 1176
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	1013
AcuI	CTGAAG	1 cut(s)	423
AfeI	AGCGCT	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	56, 521
AflIII	ACRYGT	2 cut(s)	337, 794
AgsI	TTSAA	6 cut(s)	759, 814, 896, 1081, 1129, 1200
AjiI	CACGTC	1 cut(s)	338
AloI	GAACNNNNNNTCC	4 cut(s)	11, 43, 838, 870
AluBI	AGCT	6 cut(s)	401, 754, 919, 952, 988, 1144
AluI	AGCT	6 cut(s)	401, 754, 919, 952, 988, 1144
Alw21I	GWGCWC	1 cut(s)	990
AlwI	GGATC	4 cut(s)	309, 452, 1163, 1176
Ama87I	CYCGRG	1 cut(s)	148
Aor51HI	AGCGCT	1 cut(s)	309
AoxI	GGCC	2 cut(s)	531, 597
ApoI	RAATTY	1 cut(s)	1013
AseI	ATTAAT	1 cut(s)	725
AspLEI	GCGC	2 cut(s)	310, 682
AspS9I	GGNCC	4 cut(s)	257, 356, 532, 779
AsuHPI	GGTGA	4 cut(s)	629, 650, 881, 1209
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	3 cut(s)	257, 356, 779
AxyI	CCTNAGG	1 cut(s)	360
BamHI	GGATCC	1 cut(s)	1168
BanII	GRGCYC	2 cut(s)	230, 990
BbsI	GAAGAC	1 cut(s)	1167
Bbv12I	GWGCWC	1 cut(s)	990
BccI	CCATC	3 cut(s)	131, 620, 628
BciVI	GTATCC	2 cut(s)	53, 289
BclI	TGATCA	1 cut(s)	199
BfaI	CTAG	4 cut(s)	252, 305, 1110, 1145
BfoI	RGCGCY	2 cut(s)	311, 683
BfuI	GTATCC	2 cut(s)	53, 289
BisI	GCNGC	2 cut(s)	53, 600
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	2 cut(s)	54, 601
Bme18I	GGWCC	3 cut(s)	257, 356, 779
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	257, 356, 532, 779
BmiI	GGNNCC	1 cut(s)	1170
BmsI	GCATC	5 cut(s)	430, 631, 1063, 1141, 1228
BpiI	GAAGAC	1 cut(s)	1167
BpmI	CTGGAG	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	768, 974
BsaJI	CCNNGG	2 cut(s)	282, 1063
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 838, 868
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 521
Bse1I	ACTGG	2 cut(s)	322, 471
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	2 cut(s)	660, 811
BseDI	CCNNGG	2 cut(s)	282, 1063
BseGI	GGATG	2 cut(s)	1105, 1195
BseLI	CCNNNNNNNGG	2 cut(s)	56, 521
BseMI	GCAATG	2 cut(s)	660, 811
BseMII	CTCAG	7 cut(s)	104, 351, 483, 485, 550, 840, 1194
BseNI	ACTGG	2 cut(s)	322, 471
BseRI	GAGGAG	1 cut(s)	887
BseYI	CCCAGC	1 cut(s)	310
BshFI	GGCC	2 cut(s)	533, 599
BsiHKAI	GWGCWC	1 cut(s)	990
BsiHKCI	CYCGRG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	56, 521
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	533, 599
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	230, 990
Bsp143I	GATC	4 cut(s)	199, 301, 457, 1168
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	1063
BspACI	CCGC	8 cut(s)	50, 53, 153, 255, 475, 600, 832, 1241
BspANI	GGCC	2 cut(s)	533, 599
BspCNI	CTCAG	7 cut(s)	103, 352, 484, 484, 549, 839, 1195
BspLI	GGNNCC	1 cut(s)	1170
BspPI	GGATC	4 cut(s)	309, 452, 1163, 1176
BsrDI	GCAATG	2 cut(s)	660, 811
BsrI	ACTGG	2 cut(s)	322, 471
BssECI	CCNNGG	2 cut(s)	282, 1063
BssMI	GATC	4 cut(s)	199, 301, 457, 1168
BssT1I	CCWWGG	1 cut(s)	1063
Bst4CI	ACNGT	3 cut(s)	356, 428, 593
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	5 cut(s)	192, 450, 531, 660, 921
BstDEI	CTNAG	9 cut(s)	77, 90, 360, 471, 492, 536, 750, 826, 1203
BstDSI	CCRYGG	2 cut(s)	282, 1063
BstF5I	GGATG	2 cut(s)	1105, 1195
BstH2I	RGCGCY	2 cut(s)	311, 683
BstHHI	GCGC	2 cut(s)	310, 682
BstKTI	GATC	4 cut(s)	202, 304, 460, 1171
BstMBI	GATC	4 cut(s)	199, 301, 457, 1168
BstMWI	GCNNNNNNNGC	5 cut(s)	392, 449, 650, 659, 1247
BstNSI	RCATGY	3 cut(s)	395, 452, 798
BstV2I	GAAGAC	1 cut(s)	1167
BstX2I	RGATCY	2 cut(s)	301, 1168
BstYI	RGATCY	2 cut(s)	301, 1168
Bsu36I	CCTNAGG	1 cut(s)	360
BsuI	GTATCC	2 cut(s)	53, 289
BsuRI	GGCC	2 cut(s)	533, 599
BtgI	CCRYGG	2 cut(s)	282, 1063
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	1105, 1195
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	3 cut(s)	464, 598, 1104
Cac8I	GCNNGC	5 cut(s)	192, 450, 531, 660, 921
CfoI	GCGC	2 cut(s)	310, 682
Cfr13I	GGNCC	4 cut(s)	257, 356, 532, 779
CviAII	CATG	5 cut(s)	31, 392, 449, 795, 1064
DdeI	CTNAG	9 cut(s)	77, 90, 360, 471, 492, 536, 750, 826, 1203
DpnI	GATC	4 cut(s)	201, 303, 459, 1170
DpnII	GATC	4 cut(s)	199, 301, 457, 1168
DraI	TTTAAA	1 cut(s)	1047
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	2 cut(s)	168, 821
Ecl136II	GAGCTC	1 cut(s)	988
Eco130I	CCWWGG	1 cut(s)	1063
Eco24I	GRGCYC	2 cut(s)	230, 990
Eco47I	GGWCC	3 cut(s)	257, 356, 779
Eco47III	AGCGCT	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	988
Eco57I	CTGAAG	1 cut(s)	423
Eco81I	CCTNAGG	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	988
EcoO109I	RGGNCCY	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	1063
EcoT38I	GRGCYC	2 cut(s)	230, 990
ErhI	CCWWGG	1 cut(s)	1063
FaeI	CATG	5 cut(s)	34, 395, 452, 798, 1067
FalI	AAGNNNNNCTT	6 cut(s)	70, 102, 606, 638, 685, 717
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	5 cut(s)	30, 391, 448, 794, 1063
FauNDI	CATATG	1 cut(s)	648
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	53, 600
FokI	GGATG	2 cut(s)	1112, 1202
FriOI	GRGCYC	2 cut(s)	230, 990
Fsp4HI	GCNGC	2 cut(s)	53, 600
FspBI	CTAG	4 cut(s)	252, 305, 1110, 1145
GlaI	GCGC	2 cut(s)	309, 681
GluI	GCNGC	2 cut(s)	53, 600
GsaI	CCCAGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	2 cut(s)	311, 683
HaeIII	GGCC	2 cut(s)	533, 599
HhaI	GCGC	2 cut(s)	310, 682
Hin1II	CATG	5 cut(s)	34, 395, 452, 798, 1067
Hin6I	GCGC	2 cut(s)	308, 680
HinP1I	GCGC	2 cut(s)	308, 680
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	7 cut(s)	146, 212, 496, 673, 886, 980, 1223
HphI	GGTGA	4 cut(s)	629, 650, 881, 1209
Hpy166II	GTNNAC	5 cut(s)	547, 589, 620, 779, 1034
Hpy188I	TCNGA	4 cut(s)	136, 204, 985, 1096
Hpy8I	GTNNAC	5 cut(s)	547, 589, 620, 779, 1034
HpyAV	CCTTC	2 cut(s)	166, 859
HpyCH4III	ACNGT	3 cut(s)	356, 428, 593
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	99, 658
HpyF10VI	GCNNNNNNNGC	5 cut(s)	392, 449, 650, 659, 1247
HpyF3I	CTNAG	9 cut(s)	77, 90, 360, 471, 492, 536, 750, 826, 1203
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	5 cut(s)	34, 395, 452, 798, 1067
HspAI	GCGC	2 cut(s)	308, 680
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	199, 301, 457, 1168
LmnI	GCTCC	1 cut(s)	928
LweI	GCATC	5 cut(s)	430, 631, 1063, 1141, 1228
MaeI	CTAG	4 cut(s)	252, 305, 1110, 1145
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	5 cut(s)	143, 422, 695, 790, 1243
MalI	GATC	4 cut(s)	201, 303, 459, 1170
MboI	GATC	4 cut(s)	199, 301, 457, 1168
MboII	GAAGA	7 cut(s)	78, 78, 133, 913, 1127, 1172, 1247
MflI	RGATCY	2 cut(s)	301, 1168
MhlI	GDGCHC	2 cut(s)	230, 990
MluCI	AATT	5 cut(s)	100, 689, 1013, 1042, 1209
MlyI	GAGTC	4 cut(s)	140, 221, 682, 895
MmeI	TCCRAC	1 cut(s)	1234
MseI	TTAA	6 cut(s)	668, 692, 725, 837, 1004, 1046
MspA1I	CMGCKG	1 cut(s)	475
MwoI	GCNNNNNNNGC	5 cut(s)	392, 449, 650, 659, 1247
NcoI	CCATGG	1 cut(s)	1063
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	4 cut(s)	199, 301, 457, 1168
NlaIII	CATG	5 cut(s)	34, 395, 452, 798, 1067
NlaIV	GGNNCC	1 cut(s)	1170
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	143, 695
NspI	RCATGY	3 cut(s)	395, 452, 798
PaeI	GCATGC	1 cut(s)	452
PciI	ACATGT	1 cut(s)	794
PfeI	GAWTC	3 cut(s)	496, 980, 1223
PkrI	GCNGC	2 cut(s)	54, 601
PleI	GAGTC	4 cut(s)	140, 220, 681, 894
PpsI	GAGTC	4 cut(s)	140, 220, 681, 894
PscI	ACATGT	1 cut(s)	794
PshBI	ATTAAT	1 cut(s)	725
PsiI	TTATAA	1 cut(s)	1041
Psp124BI	GAGCTC	1 cut(s)	990
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	1170
PspPI	GGNCC	4 cut(s)	257, 356, 532, 779
PsuI	RGATCY	2 cut(s)	301, 1168
SacI	GAGCTC	1 cut(s)	990
SaqAI	TTAA	6 cut(s)	668, 692, 725, 837, 1004, 1046
SatI	GCNGC	2 cut(s)	53, 600
Sau3AI	GATC	4 cut(s)	199, 301, 457, 1168
Sau96I	GGNCC	4 cut(s)	257, 356, 532, 779
SchI	GAGTC	4 cut(s)	140, 221, 682, 895
SduI	GDGCHC	2 cut(s)	230, 990
SfaNI	GCATC	5 cut(s)	430, 631, 1063, 1141, 1228
SinI	GGWCC	3 cut(s)	257, 356, 779
SmiI	ATTTAAAT	1 cut(s)	1047
SmlI	CTYRAG	2 cut(s)	783, 953
SmoI	CTYRAG	2 cut(s)	783, 953
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	5 cut(s)	100, 689, 1013, 1042, 1209
SsiI	CCGC	8 cut(s)	50, 53, 153, 255, 475, 600, 832, 1241
SspI	AATATT	2 cut(s)	723, 841
SspMI	CTAG	4 cut(s)	252, 305, 1110, 1145
SstI	GAGCTC	1 cut(s)	990
StyI	CCWWGG	1 cut(s)	1063
SwaI	ATTTAAAT	1 cut(s)	1047
TaaI	ACNGT	3 cut(s)	356, 428, 593
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	993
TasI	AATT	5 cut(s)	100, 689, 1013, 1042, 1209
TauI	GCSGC	2 cut(s)	55, 602
TfiI	GAWTC	3 cut(s)	496, 980, 1223
Tru1I	TTAA	6 cut(s)	668, 692, 725, 837, 1004, 1046
Tru9I	TTAA	6 cut(s)	668, 692, 725, 837, 1004, 1046
TscAI	CASTG	3 cut(s)	471, 598, 1111
TseFI	GTSAC	2 cut(s)	143, 695
Tsp45I	GTSAC	2 cut(s)	143, 695
TspDTI	ATGAA	4 cut(s)	47, 1006, 1206, 1248
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	3 cut(s)	471, 598, 1111
VpaK11BI	GGWCC	3 cut(s)	257, 356, 779
VspI	ATTAAT	1 cut(s)	725
XapI	RAATTY	1 cut(s)	1013
XceI	RCATGY	3 cut(s)	395, 452, 798
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	4 cut(s)	252, 305, 1110, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.