MD02G1081700.v1.1

Belongs to the RecA family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
6407124 .. 6411219
4096 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1081700.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGGCCAGGCTTCTCCGAAACGCTCTTTCCATGAAACGTTTCCTATTCCCGCCACAGATGGACCGGAGAGGATTATTGGGTACATCTACCCAGTTTTGCAATTTTTCTTCGAAAGTTAGAAAGAAATCTAAGTCGGATGGAAGTGACTCCTGTGATGAGAATTTGTCGAAGAAGGAGTTGGCCCTGAAGCAAGCCCTGGATCAGATTACGTCCTCATTTGGAAAGGGATCTATAATGTGGCTTGGTCGATCCGTCTCTCCTAGACAAGTCCCAGTGGTATCTACGGGTTCTTTTTCTTTGGACATGGCACTGGGAATTGGTGGATTTCCAAAGGGACGTGTTGTGGAGATATATGGTGCTGAGGCTTCTGGGAAAACTACTCTGGCTCTTCATGTAATAGCCGAAGCACAGAAGCAAGGAGGGACATGTGTTTTTGTTGACGCTGAGCACGCTCTTGATCCTACACTGGCTCAGTCTATCGGGGTAAACACTGAGAATCTACTTCTCTCACAACCTGATTCTGGTGAGCAAGCCCTCAGTCTTGTAGACACTCTAGTCCGCAGTGGCTCAGTTGATGTTGTTGTTGTTGACAGTGTGGCTGCACTTGTGCCTAAAGGTGAACTTGATGGTGAGATGGGTGATGCTCATATGGCAATGCAGGCTAGACTAATGAGCCAGGCACTTCGCAAATTGAGTCACTCTTTATCTCTATCACAGACAATATTAATCTTTACAAATCAGGTGAGGGCGAAGCTTTCTACTTTTGGAGGATTTGGTGGGCCAACTGAAGTTACTTGTGGCGGCAATGCTTTGAAGTTTTATGCTTCAGTGCGCCTTAATATGAGGAGAATAGGACTTGTAAAGAAGGGAGAAGAGACTATAGGAAGTCAAGTTCAGGTGAAGATAGTGAAGAACAAACTCGCTCCTCCATTCAGAACTGTTCAGATAGAGCTTGAGTTTGGTAAGGGTATATGTCGGGAATCTGAGATCATTGATTTGGGATTGAAAAACAAATTCATCACAAAAGCTGGCGCAATGTACGACTTAAATGGTCAAAGTTTCCGTGGCAAGGATGCCTTGAAAAGGTTTTTGTCCGAGAATAGTACTGCTATGGAGGAACTTACAGCAAAGCTTACGGAGAAGCTAGTTGATGATGTGGCAGCCAAGGAAGCAGAAACAGAACTTATGGGCGAAGGTCCTGTAGAGGAAATTGTTTCGCCTGATTCTACCGACGAAGATGCAGTTACGGCAGTTGGAGCGTAA

Protein Analysis

421

Amino Acids

45.05

Weight (kDa)

6.93

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RecA_N PF00154 61 - 325 3.1e-118 RecA N-terminal domain
Rad51 PF08423 90 - 283 3.3e-11 Rad51
ATPase PF06745 93 - 151 1.5e-07 KaiC
RecA_C PF21096 329 - 382 6e-09 RecA C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 554
AccI GTMKAC 1 cut(s) 546
AciI CCGC 3 cut(s) 50, 559, 801
AclI AACGTT 1 cut(s) 37
AclWI GGATC 4 cut(s) 207, 235, 243, 452
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 160, 1013
AcuI CTGAAG 3 cut(s) 206, 807, 810
AfaI GTAC 3 cut(s) 82, 1040, 1105
AfiI CCNNNNNNNGG 3 cut(s) 521, 1069, 1083
AflIII ACRYGT 2 cut(s) 337, 425
AgsI TTSAA 3 cut(s) 814, 1006, 1081
AjiI CACGTC 1 cut(s) 338
AjnI CCWGG 3 cut(s) 5, 195, 675
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AloI GAACNNNNNNTCC 2 cut(s) 876, 908
AluBI AGCT 5 cut(s) 754, 952, 1028, 1132, 1144
AluI AGCT 5 cut(s) 754, 952, 1028, 1132, 1144
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 2 cut(s) 259, 869
AlwI GGATC 4 cut(s) 207, 235, 243, 452
AoxI GGCC 3 cut(s) 3, 180, 779
ApeKI GCWGC 2 cut(s) 599, 1160
ApoI RAATTY 2 cut(s) 160, 1013
AseI ATTAAT 1 cut(s) 725
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 2 cut(s) 834, 1034
AspS9I GGNCC 4 cut(s) 61, 181, 779, 1196
AsuHPI GGTGA 6 cut(s) 536, 629, 641, 650, 754, 910
AsuII TTCGAA 1 cut(s) 110
AvaII GGWCC 2 cut(s) 61, 1196
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 450
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 586, 1172
BccI CCATC 4 cut(s) 52, 131, 620, 628
BcgI CGANNNNNNTGC 2 cut(s) 1220, 1254
BciT130I CCWGG 3 cut(s) 7, 197, 677
BcoDI GTCTC 2 cut(s) 259, 869
BfaI CTAG 4 cut(s) 261, 554, 663, 1145
BfmI CTRYAG 2 cut(s) 879, 1200
BisI GCNGC 3 cut(s) 600, 802, 1161
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 3 cut(s) 601, 803, 1162
BmcAI AGTACT 1 cut(s) 1105
Bme1390I CCNGG 3 cut(s) 7, 197, 677
Bme18I GGWCC 2 cut(s) 61, 1196
BmgBI CACGTC 1 cut(s) 338
BmgT120I GGNCC 4 cut(s) 61, 181, 779, 1196
BmrFI CCNGG 3 cut(s) 7, 197, 677
BmrI ACTGGG 3 cut(s) 85, 266, 320
BmsI GCATC 3 cut(s) 631, 1063, 1228
BmuI ACTGGG 3 cut(s) 85, 266, 320
Bpu10I CCTNAGC 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 974
BsaJI CCNNGG 3 cut(s) 195, 1063, 1164
BsaWI WCCGGW 1 cut(s) 63
Bsc4I CCNNNNNNNGG 3 cut(s) 521, 1069, 1083
Bse1I ACTGG 4 cut(s) 91, 272, 315, 471
Bse3DI GCAATG 3 cut(s) 660, 811, 1041
BseBI CCWGG 3 cut(s) 7, 197, 677
BseDI CCNNGG 3 cut(s) 195, 1063, 1164
BseGI GGATG 2 cut(s) 142, 1078
BseLI CCNNNNNNNGG 3 cut(s) 521, 1069, 1083
BseMI GCAATG 3 cut(s) 660, 811, 1041
BseMII CTCAG 7 cut(s) 351, 435, 483, 485, 550, 582, 975
BseNI ACTGG 4 cut(s) 91, 272, 315, 471
BseRI GAGGAG 2 cut(s) 859, 915
BseXI GCAGC 2 cut(s) 586, 1172
BsgI GTGCAG 1 cut(s) 585
BshFI GGCC 3 cut(s) 5, 182, 781
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 3 cut(s) 254, 348, 436
BslI CCNNNNNNNGG 3 cut(s) 521, 1069, 1083
BsmAI GTCTC 2 cut(s) 259, 869
BsmBI CGTCTC 1 cut(s) 259
BsmFI GGGAC 3 cut(s) 254, 348, 436
BsnI GGCC 3 cut(s) 5, 182, 781
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 5 cut(s) 199, 227, 248, 457, 987
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 3 cut(s) 50, 559, 801
BspANI GGCC 3 cut(s) 5, 182, 781
BspCNI CTCAG 7 cut(s) 352, 436, 484, 484, 549, 581, 976
BspPI GGATC 4 cut(s) 207, 235, 243, 452
BspQI GCTCTTC 1 cut(s) 393
BspT104I TTCGAA 1 cut(s) 110
BsrDI GCAATG 3 cut(s) 660, 811, 1041
BsrI ACTGG 4 cut(s) 91, 272, 315, 471
BssECI CCNNGG 3 cut(s) 195, 1063, 1164
BssMI GATC 5 cut(s) 199, 227, 248, 457, 987
BssT1I CCWWGG 1 cut(s) 1164
Bst2UI CCWGG 3 cut(s) 7, 197, 677
Bst4CI ACNGT 2 cut(s) 593, 940
Bst6I CTCTTC 2 cut(s) 393, 867
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 5 cut(s) 192, 450, 531, 660, 1030
BstDEI CTNAG 8 cut(s) 129, 360, 444, 471, 492, 536, 568, 984
BstDSI CCRYGG 1 cut(s) 1063
BstENI CCTNNNNNAGG 1 cut(s) 1081
BstF5I GGATG 2 cut(s) 142, 1078
BstHHI GCGC 2 cut(s) 834, 1034
BstKTI GATC 5 cut(s) 202, 230, 251, 460, 990
BstMAI GTCTC 2 cut(s) 259, 869
BstMBI GATC 5 cut(s) 199, 227, 248, 457, 987
BstMWI GCNNNNNNNGC 6 cut(s) 449, 650, 659, 1169, 1247, 1256
BstNI CCWGG 3 cut(s) 7, 197, 677
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 3 cut(s) 5, 195, 675
BstSFI CTRYAG 2 cut(s) 879, 1200
BstV1I GCAGC 2 cut(s) 586, 1172
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 3 cut(s) 5, 182, 781
BtgI CCRYGG 1 cut(s) 1063
BtrI CACGTC 1 cut(s) 338
BtsCI GGATG 2 cut(s) 142, 1078
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 7 cut(s) 279, 308, 464, 489, 568, 598, 834
Cac8I GCNNGC 5 cut(s) 192, 450, 531, 660, 1030
CfoI GCGC 2 cut(s) 834, 1034
Cfr13I GGNCC 4 cut(s) 61, 181, 779, 1196
CseI GACGC 1 cut(s) 449
Csp6I GTAC 3 cut(s) 81, 1039, 1104
CviAII CATG 4 cut(s) 31, 304, 392, 426
CviQI GTAC 3 cut(s) 81, 1039, 1104
DdeI CTNAG 8 cut(s) 129, 360, 444, 471, 492, 536, 568, 984
DpnI GATC 5 cut(s) 201, 229, 250, 459, 989
DpnII GATC 5 cut(s) 199, 227, 248, 457, 987
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 393, 867
EarI CTCTTC 2 cut(s) 393, 867
Eco130I CCWWGG 1 cut(s) 1164
Eco47I GGWCC 2 cut(s) 61, 1196
Eco57I CTGAAG 3 cut(s) 206, 807, 810
EcoNI CCTNNNNNAGG 1 cut(s) 1081
EcoO109I RGGNCCY 1 cut(s) 1196
EcoRII CCWGG 3 cut(s) 5, 195, 675
EcoT14I CCWWGG 1 cut(s) 1164
ErhI CCWWGG 1 cut(s) 1164
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 4 cut(s) 34, 307, 395, 429
FalI AAGNNNNNCTT 4 cut(s) 606, 638, 1061, 1093
FaqI GGGAC 3 cut(s) 254, 348, 436
FatI CATG 4 cut(s) 30, 303, 391, 425
FauI CCCGC 1 cut(s) 57
FauNDI CATATG 1 cut(s) 648
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 3 cut(s) 600, 802, 1161
FokI GGATG 2 cut(s) 149, 1085
Fsp4HI GCNGC 3 cut(s) 600, 802, 1161
FspBI CTAG 4 cut(s) 261, 554, 663, 1145
GlaI GCGC 2 cut(s) 833, 1033
GluI GCNGC 3 cut(s) 600, 802, 1161
HaeIII GGCC 3 cut(s) 5, 182, 781
HapII CCGG 1 cut(s) 64
HgaI GACGC 1 cut(s) 449
HhaI GCGC 2 cut(s) 834, 1034
Hin1II CATG 4 cut(s) 34, 307, 395, 429
Hin6I GCGC 2 cut(s) 832, 1032
HinP1I GCGC 2 cut(s) 832, 1032
HincII GTYRAC 2 cut(s) 439, 589
HindII GTYRAC 2 cut(s) 439, 589
HindIII AAGCTT 2 cut(s) 752, 1130
HinfI GANTC 6 cut(s) 146, 496, 518, 694, 980, 1223
HpaII CCGG 1 cut(s) 64
HphI GGTGA 6 cut(s) 536, 629, 641, 650, 754, 910
Hpy166II GTNNAC 5 cut(s) 439, 487, 547, 589, 620
Hpy188I TCNGA 7 cut(s) 17, 136, 204, 935, 945, 985, 1096
Hpy188III TCNNGA 2 cut(s) 455, 977
Hpy8I GTNNAC 5 cut(s) 439, 487, 547, 589, 620
Hpy99I CGWCG 1 cut(s) 1235
HpyAV CCTTC 3 cut(s) 166, 859, 1187
HpyCH4III ACNGT 2 cut(s) 593, 940
HpyCH4IV ACGT 3 cut(s) 37, 209, 337
HpyCH4V TGCA 4 cut(s) 99, 602, 658, 1241
HpyF10VI GCNNNNNNNGC 6 cut(s) 449, 650, 659, 1169, 1247, 1256
HpyF3I CTNAG 8 cut(s) 129, 360, 444, 471, 492, 536, 568, 984
HpySE526I ACGT 3 cut(s) 37, 209, 337
Hsp92II CATG 4 cut(s) 34, 307, 395, 429
HspAI GCGC 2 cut(s) 832, 1032
Kzo9I GATC 5 cut(s) 199, 227, 248, 457, 987
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 2 cut(s) 928, 1256
Lsp1109I GCAGC 2 cut(s) 586, 1172
LweI GCATC 3 cut(s) 631, 1063, 1228
MaeI CTAG 4 cut(s) 261, 554, 663, 1145
MaeII ACGT 3 cut(s) 37, 209, 337
MaeIII GTNAC 4 cut(s) 143, 695, 790, 1243
MalI GATC 5 cut(s) 201, 229, 250, 459, 989
MboI GATC 5 cut(s) 199, 227, 248, 457, 987
MboII GAAGA 7 cut(s) 99, 181, 380, 884, 913, 922, 1247
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 450
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 100, 160, 315, 689, 1013, 1209
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 140, 703
MmeI TCCRAC 2 cut(s) 114, 1234
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 38
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 725, 837, 1046
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 3 cut(s) 7, 197, 677
MvaI CCWGG 3 cut(s) 7, 197, 677
MwoI GCNNNNNNNGC 6 cut(s) 449, 650, 659, 1169, 1247, 1256
NdeI CATATG 1 cut(s) 648
NdeII GATC 5 cut(s) 199, 227, 248, 457, 987
NlaIII CATG 4 cut(s) 34, 307, 395, 429
NmuCI GTSAC 2 cut(s) 143, 695
NspI RCATGY 1 cut(s) 429
NspV TTCGAA 1 cut(s) 110
PciI ACATGT 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 4 cut(s) 496, 518, 980, 1223
PkrI GCNGC 3 cut(s) 601, 803, 1162
PleI GAGTC 2 cut(s) 140, 702
PpsI GAGTC 2 cut(s) 140, 702
PpuMI RGGWCCY 1 cut(s) 1196
PscI ACATGT 1 cut(s) 425
PshBI ATTAAT 1 cut(s) 725
Psp1406I AACGTT 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 1196
Psp6I CCWGG 3 cut(s) 5, 195, 675
PspGI CCWGG 3 cut(s) 5, 195, 675
PspPI GGNCC 4 cut(s) 61, 181, 779, 1196
PspPPI RGGWCCY 1 cut(s) 1196
PsuI RGATCY 1 cut(s) 227
RsaI GTAC 3 cut(s) 82, 1040, 1105
RsaNI GTAC 3 cut(s) 81, 1039, 1104
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 3 cut(s) 725, 837, 1046
SatI GCNGC 3 cut(s) 600, 802, 1161
Sau3AI GATC 5 cut(s) 199, 227, 248, 457, 987
Sau96I GGNCC 4 cut(s) 61, 181, 779, 1196
ScaI AGTACT 1 cut(s) 1105
SchI GAGTC 2 cut(s) 140, 703
ScrFI CCNGG 3 cut(s) 7, 197, 677
SduI GDGCHC 1 cut(s) 450
SfaNI GCATC 3 cut(s) 631, 1063, 1228
SfcI CTRYAG 2 cut(s) 879, 1200
SfuI TTCGAA 1 cut(s) 110
SinI GGWCC 2 cut(s) 61, 1196
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
Sse9I AATT 6 cut(s) 100, 160, 315, 689, 1013, 1209
SsiI CCGC 3 cut(s) 50, 559, 801
SspI AATATT 1 cut(s) 723
SspMI CTAG 4 cut(s) 261, 554, 663, 1145
StyD4I CCNGG 3 cut(s) 5, 195, 675
StyI CCWWGG 1 cut(s) 1164
TaaI ACNGT 2 cut(s) 593, 940
TaiI ACGT 3 cut(s) 40, 212, 340
TaqI TCGA 3 cut(s) 110, 167, 247
TasI AATT 6 cut(s) 100, 160, 315, 689, 1013, 1209
TatI WGTACW 1 cut(s) 1103
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 4 cut(s) 496, 518, 980, 1223
Tru1I TTAA 3 cut(s) 725, 837, 1046
Tru9I TTAA 3 cut(s) 725, 837, 1046
TscAI CASTG 7 cut(s) 279, 315, 471, 496, 568, 598, 834
TseFI GTSAC 2 cut(s) 143, 695
TseI GCWGC 2 cut(s) 599, 1160
Tsp45I GTSAC 2 cut(s) 143, 695
TspDTI ATGAA 3 cut(s) 47, 380, 1006
TspGWI ACGGA 3 cut(s) 241, 1052, 1151
TspRI CASTG 7 cut(s) 279, 315, 471, 496, 568, 598, 834
VpaK11BI GGWCC 2 cut(s) 61, 1196
VspI ATTAAT 1 cut(s) 725
XagI CCTNNNNNAGG 1 cut(s) 1081
XapI RAATTY 2 cut(s) 160, 1013
XceI RCATGY 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 546
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 4 cut(s) 261, 554, 663, 1145
ZrmI AGTACT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.