Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Forward (+)

2952124 .. 2954866

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0037900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGGGCCGAGAGCACCTCCAGTGGGATTGATCGGAACGACAAGAGCTACGAGACTCCGGTGGTCTTGAATGTCTACGACCTCACCCCTATCAACAATTATTCTGTTTGGTTCGGTCTCGGAATATTCCACTCCGGTATTGAAGTTCATGGTAAAGAGTATGGTTTTGGAGCCCATGACTTCCCAGTTAGTGGAGTTTTTGAAGTGGAACCAAAGGCCTGCCCGGGTTTCATTTACCGATGCTCTATTTCACTTGGTCGCATAAACATGCCTCCTTCTGAATTTCGGACATTTATTGAGAATGTTGCTGCAGAGTATCATGGGGATACATATCACCTCATCTCCAAGAATTGCAACCATTTTACTGATGACATAGCATGTCGGTTGACAGAAAAACGGATTCCTGGATGGGTGAACCGGCTTGCTCGGCTAGGTTCCTTGTGCAGCTGTCTTCTTCCAGAAAGCCTTCAAGTGACTACTGTTAAACAGACTCCTGAATACCATCATGAGTCAGAAGATGGTACTGAATCTCTAACAATCACCACGCCTCGTGAGTCGACAGAAGTTGATGACGATCAAGAAAAGCGTCTGCTGTCACCATTGGCTGCAGTGTCACCAATGTCTGGATGCGGGGATGTGACTTTTGTTAAAGAGACTCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

221

Amino Acids

24.57

Weight (kDa)

5.14

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C97	PF05903	20 - 154	7.1e-48	PPPDE putative peptidase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	191, 623
AccI	GTMKAC	2 cut(s)	75, 557
AciI	CCGC	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	3 cut(s)	24, 191, 623
AgsI	TTSAA	4 cut(s)	70, 143, 203, 470
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	2 cut(s)	48, 447
AluI	AGCT	2 cut(s)	48, 447
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	3 cut(s)	47, 122, 647
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	2 cut(s)	6, 216
ApeKI	GCWGC	3 cut(s)	308, 444, 605
ApoI	RAATTY	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	6
AsuC2I	CCSGG	2 cut(s)	224, 225
AsuHPI	GGTGA	6 cut(s)	76, 326, 424, 532, 588, 606
AvaI	CYCGRG	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	175
BauI	CACGAG	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	295, 456, 592
BccI	CCATC	3 cut(s)	402, 510, 512
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	1 cut(s)	319
BcnI	CCSGG	2 cut(s)	224, 225
BcoDI	GTCTC	3 cut(s)	47, 122, 647
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	2 cut(s)	309, 606
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	3 cut(s)	309, 445, 606
BlsI	GCNGC	3 cut(s)	310, 446, 607
Bme1390I	CCNGG	3 cut(s)	224, 225, 405
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	4 cut(s)	7, 172, 210, 436
BmrFI	CCNGG	3 cut(s)	224, 225, 405
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	230, 617
BmuI	ACTGGG	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	443
BplI	GAGNNNNNCTC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	4
BpuMI	CCSGG	2 cut(s)	224, 225
BsaBI	GATNNNNATC	2 cut(s)	330, 573
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	2 cut(s)	58, 134
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 191, 623
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	21, 185
Bse8I	GATNNNNATC	2 cut(s)	330, 573
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	3 cut(s)	413, 632, 640
BseJI	GATNNNNATC	2 cut(s)	330, 573
BseLI	CCNNNNNNNGG	3 cut(s)	24, 191, 623
BseNI	ACTGG	2 cut(s)	21, 185
BseXI	GCAGC	3 cut(s)	295, 456, 592
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	2 cut(s)	8, 218
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	4 cut(s)	59, 135, 224, 418
BslI	CCNNNNNNNGG	3 cut(s)	24, 191, 623
BsmAI	GTCTC	3 cut(s)	47, 122, 647
BsnI	GGCC	2 cut(s)	8, 218
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	17, 175
Bsp143I	GATC	2 cut(s)	31, 574
BspACI	CCGC	1 cut(s)	630
BspANI	GGCC	2 cut(s)	8, 218
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	4 cut(s)	7, 172, 210, 436
BspMAI	CTGCAG	2 cut(s)	313, 610
BspTNI	GGTCTC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	21, 185
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	31, 574
BssSI	CACGAG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	220, 423
BstF5I	GGATG	3 cut(s)	413, 632, 640
BstKTI	GATC	2 cut(s)	34, 577
BstMAI	GTCTC	3 cut(s)	47, 122, 647
BstMBI	GATC	2 cut(s)	31, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	2 cut(s)	271, 381
BstSCI	CCNGG	3 cut(s)	222, 223, 403
BstSFI	CTRYAG	2 cut(s)	309, 606
BstV1I	GCAGC	3 cut(s)	295, 456, 592
BstV2I	GAAGAC	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	8, 218
BtsCI	GGATG	3 cut(s)	413, 632, 640
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	28, 615
Cac8I	GCNNGC	2 cut(s)	220, 423
CciI	TCATGA	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	6
Cfr9I	CCCGGG	1 cut(s)	223
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	6 cut(s)	149, 176, 268, 320, 378, 506
CviJI	RGCY	9 cut(s)	8, 48, 173, 218, 421, 430, 447, 465, 605
CviKI_1	RGCY	9 cut(s)	8, 48, 173, 218, 421, 430, 447, 465, 605
CviQI	GTAC	1 cut(s)	522
DpnI	GATC	2 cut(s)	33, 576
DpnII	GATC	2 cut(s)	31, 574
Eco147I	AGGCCT	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	6 cut(s)	152, 179, 271, 323, 381, 509
FatI	CATG	6 cut(s)	148, 175, 267, 319, 377, 505
FauI	CCCGC	1 cut(s)	623
FblI	GTMKAC	2 cut(s)	75, 557
Fnu4HI	GCNGC	3 cut(s)	309, 445, 606
FokI	GGATG	3 cut(s)	420, 639, 647
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	3 cut(s)	309, 445, 606
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	3 cut(s)	309, 445, 606
GsuI	CTGGAG	1 cut(s)	4
HaeIII	GGCC	2 cut(s)	8, 218
HapII	CCGG	4 cut(s)	59, 135, 224, 418
HgaI	GACGC	1 cut(s)	575
Hin1II	CATG	6 cut(s)	152, 179, 271, 323, 381, 509
HincII	GTYRAC	2 cut(s)	387, 558
HindII	GTYRAC	2 cut(s)	387, 558
HinfI	GANTC	7 cut(s)	55, 400, 490, 509, 527, 554, 655
HpaII	CCGG	4 cut(s)	59, 135, 224, 418
HphI	GGTGA	6 cut(s)	76, 326, 424, 532, 588, 606
Hpy166II	GTNNAC	4 cut(s)	76, 387, 415, 558
Hpy188I	TCNGA	5 cut(s)	36, 122, 280, 288, 514
Hpy188III	TCNNGA	7 cut(s)	67, 458, 494, 506, 551, 578, 624
Hpy8I	GTNNAC	4 cut(s)	76, 387, 415, 558
HpyAV	CCTTC	2 cut(s)	285, 476
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4V	TGCA	4 cut(s)	311, 354, 444, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
Hsp92II	CATG	6 cut(s)	152, 179, 271, 323, 381, 509
Kzo9I	GATC	2 cut(s)	31, 574
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	3 cut(s)	295, 456, 592
LweI	GCATC	2 cut(s)	230, 617
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	4 cut(s)	472, 594, 612, 637
MalI	GATC	2 cut(s)	33, 576
MboI	GATC	2 cut(s)	31, 574
MboII	GAAGA	3 cut(s)	443, 446, 527
MhlI	GDGCHC	2 cut(s)	17, 175
MluCI	AATT	3 cut(s)	97, 281, 349
MlyI	GAGTC	5 cut(s)	49, 484, 518, 563, 649
MnlI	CCTC	5 cut(s)	28, 92, 282, 347, 558
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	2 cut(s)	483, 648
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	447
MspI	CCGG	4 cut(s)	59, 135, 224, 418
MspR9I	CCNGG	3 cut(s)	224, 225, 405
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	427
NciI	CCSGG	2 cut(s)	224, 225
NdeII	GATC	2 cut(s)	31, 574
NlaIII	CATG	6 cut(s)	152, 179, 271, 323, 381, 509
NlaIV	GGNNCC	4 cut(s)	7, 172, 210, 436
NmeAIII	GCCGAG	2 cut(s)	34, 406
NmuCI	GTSAC	4 cut(s)	472, 594, 612, 637
NspI	RCATGY	2 cut(s)	271, 381
PagI	TCATGA	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	400, 527
PflMI	CCANNNNNTGG	2 cut(s)	191, 623
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	310, 446, 607
PleI	GAGTC	5 cut(s)	49, 484, 517, 562, 649
PpsI	GAGTC	5 cut(s)	49, 484, 517, 562, 649
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	4 cut(s)	7, 172, 210, 436
PspPI	GGNCC	1 cut(s)	6
PstI	CTGCAG	2 cut(s)	313, 610
PvuII	CAGCTG	1 cut(s)	447
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	266
SalI	GTCGAC	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	483, 648
SatI	GCNGC	3 cut(s)	309, 445, 606
Sau3AI	GATC	2 cut(s)	31, 574
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	5 cut(s)	49, 484, 518, 563, 649
ScrFI	CCNGG	3 cut(s)	224, 225, 405
SduI	GDGCHC	2 cut(s)	17, 175
SetI	ASST	6 cut(s)	20, 50, 84, 339, 436, 449
SfaNI	GCATC	2 cut(s)	230, 617
SfcI	CTRYAG	2 cut(s)	309, 606
SmaI	CCCGGG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	97, 281, 349
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	630
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	1 cut(s)	431
StuI	AGGCCT	1 cut(s)	218
StyD4I	CCNGG	3 cut(s)	222, 223, 403
TaaI	ACNGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	557
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	97, 281, 349
TfiI	GAWTC	2 cut(s)	400, 527
Tru1I	TTAA	2 cut(s)	483, 648
Tru9I	TTAA	2 cut(s)	483, 648
TscAI	CASTG	2 cut(s)	28, 615
TseFI	GTSAC	4 cut(s)	472, 594, 612, 637
TseI	GCWGC	3 cut(s)	308, 444, 605
Tsp45I	GTSAC	4 cut(s)	472, 594, 612, 637
TspDTI	ATGAA	2 cut(s)	137, 220
TspGWI	ACGGA	1 cut(s)	412
TspMI	CCCGGG	1 cut(s)	223
TspRI	CASTG	2 cut(s)	28, 615
Van91I	CCANNNNNTGG	2 cut(s)	191, 623
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	2 cut(s)	271, 381
XmaI	CCCGGG	1 cut(s)	223
XmiI	GTMKAC	2 cut(s)	75, 557
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.