Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Reverse (-)

6524496 .. 6528030

Gene Structure 3535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG083100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGAGGCTTCTCCAAAACGCTCTCTCTATCAAACGCTTTCTATTACCGCCGCAGGGATATAGAAGTGGATTACTGGGCACTTCTTCTCAGCTTTGCAGTTTTTCTTCTAAAGGTAGAAAGAAGTCCAAGTCTGATGGAAGTGACTCGGGCGGAGAGAATATGTCCAAGAAGGATTTAGCTCTCCAGCAAGCACTTGATCAGATTACGGATTCTTTTGGAAAGGGTTCTATAATGTGGCTTGGTCGGTCTGGGGCTCCCAGACATGTTGAGGTTGTCTCCACAGGATCTTTTTCTCTGGATCTGGCACTGGGAACCGGTGGCTTTCCCAAGGGACGTGTTGTGGAGATTTATGGTCCTGAGGCTTCTGGGAAAACTACTCTCGCTCTACATGTAATAGCTGAAGCACAGAAACAAGGAGGTTATTGTGTTTTTGTTGATGCTGAGCATGCCCTTGATCCTACACTGGCTCAGGCGATTGGGGTAAAGACCGAGAATCTACTTCTATCGCAACCTGATTGTGGAGAGCAAGCCCTCAGTCTTGTGGACACTCTAATCAGGAGTGGTTCAGTTGATGTTGTTGTTGTTGACAGTGTGGCTGCCTTAGTGCCTAAAGGCGAACTTGATGGGGAGATGGGTGATGCTCATATGGCAATGCAGGCTAGGTTAATGAGTCAGGCGCTTCGGAAATTAAGTCACTCTTTATCTCTATCCCAGACAATATTAATCTTTACAAATCAGGTCAGGGCTAAGCTTTCGACTTTTGGAGGATTTGGTGGGCCTCAAGAAGTTACTTGTGGTGGCAATGCTTTGAAGTTCTATGCCTCAGTCCGCCTTAATGTTAGGAGAATAGGGCTTATCAAGAAGGGTGAAGAGGTAGGTACAAATGCCATCTGTCTATTTTGTTCATGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

305

Amino Acids

32.32

Weight (kDa)

8.86

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	61 - 296	3.4e-104	RecA N-terminal domain
Rad51	PF08423	92 - 283	2e-10	Rad51
ATPase	PF06745	94 - 150	5.7e-07	KaiC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	50, 53, 153, 832
AclWI	GGATC	3 cut(s)	295, 309, 452
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	1 cut(s)	883
AfiI	CCNNNNNNNGG	2 cut(s)	56, 521
AflIII	ACRYGT	3 cut(s)	265, 337, 391
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	814
AjiI	CACGTC	1 cut(s)	338
AluBI	AGCT	4 cut(s)	94, 182, 401, 754
AluI	AGCT	4 cut(s)	94, 182, 401, 754
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	3 cut(s)	295, 309, 452
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	779
ApeKI	GCWGC	1 cut(s)	599
AseI	ATTAAT	1 cut(s)	725
AsiGI	ACCGGT	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	682
AspS9I	GGNCC	2 cut(s)	356, 779
AsuHPI	GGTGA	2 cut(s)	650, 881
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	356
AxyI	CCTNAGG	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	4 cut(s)	131, 620, 628, 899
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	683
BisI	GCNGC	2 cut(s)	53, 600
BlpI	GCTNAGC	2 cut(s)	444, 750
BlsI	GCNGC	2 cut(s)	54, 601
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	356, 779
BmiI	GGNNCC	2 cut(s)	258, 316
BmrI	ACTGGG	2 cut(s)	86, 320
BmsI	GCATC	2 cut(s)	430, 631
BmuI	ACTGGG	2 cut(s)	86, 320
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu1102I	GCTNAGC	2 cut(s)	444, 750
BpuEI	CTTGAG	1 cut(s)	768
BsaJI	CCNNGG	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 521
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	3 cut(s)	81, 315, 471
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	2 cut(s)	660, 811
BseDI	CCNNGG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	56, 521
BseMI	GCAATG	2 cut(s)	660, 811
BseMII	CTCAG	6 cut(s)	104, 351, 435, 485, 550, 840
BseNI	ACTGG	3 cut(s)	81, 315, 471
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	586
BshFI	GGCC	1 cut(s)	781
BshTI	ACCGGT	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	56, 521
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	781
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	83, 259
Bsp143I	GATC	4 cut(s)	199, 287, 301, 457
Bsp1720I	GCTNAGC	2 cut(s)	444, 750
BspACI	CCGC	4 cut(s)	50, 53, 153, 832
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	6 cut(s)	103, 352, 436, 484, 549, 839
BspLI	GGNNCC	2 cut(s)	258, 316
BspPI	GGATC	3 cut(s)	295, 309, 452
BsrDI	GCAATG	2 cut(s)	660, 811
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	81, 315, 471
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	4 cut(s)	199, 287, 301, 457
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	593
Bst6I	CTCTTC	1 cut(s)	867
BstC8I	GCNNGC	4 cut(s)	192, 450, 531, 660
BstDEI	CTNAG	8 cut(s)	90, 360, 444, 471, 536, 604, 750, 826
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	682
BstKTI	GATC	4 cut(s)	202, 290, 304, 460
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	4 cut(s)	199, 287, 301, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 650, 659
BstNSI	RCATGY	3 cut(s)	269, 395, 452
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	586
BstX2I	RGATCY	2 cut(s)	287, 301
BstYI	RGATCY	2 cut(s)	287, 301
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	781
BtrI	CACGTC	1 cut(s)	338
BtsIMutI	CAGTG	3 cut(s)	308, 464, 598
Cac8I	GCNNGC	4 cut(s)	192, 450, 531, 660
CfoI	GCGC	1 cut(s)	682
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	356, 779
Csp6I	GTAC	1 cut(s)	882
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	4 cut(s)	266, 392, 449, 909
CviQI	GTAC	1 cut(s)	882
DdeI	CTNAG	8 cut(s)	90, 360, 444, 471, 536, 604, 750, 826
DpnI	GATC	4 cut(s)	201, 289, 303, 459
DpnII	GATC	4 cut(s)	199, 287, 301, 457
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
EciI	GGCGGA	2 cut(s)	168, 821
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	423
Eco81I	CCTNAGG	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	4 cut(s)	269, 395, 452, 912
FalI	AAGNNNNNCTT	4 cut(s)	606, 638, 685, 717
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	4 cut(s)	265, 391, 448, 908
FauNDI	CATATG	1 cut(s)	648
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	53, 600
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	53, 600
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	1 cut(s)	681
GluI	GCNGC	2 cut(s)	53, 600
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	1 cut(s)	781
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	682
Hin1II	CATG	4 cut(s)	269, 395, 452, 912
Hin6I	GCGC	1 cut(s)	680
HinP1I	GCGC	1 cut(s)	680
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	4 cut(s)	146, 212, 496, 673
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	2 cut(s)	650, 881
Hpy166II	GTNNAC	2 cut(s)	547, 589
Hpy188I	TCNGA	3 cut(s)	136, 204, 687
Hpy188III	TCNNGA	5 cut(s)	299, 359, 559, 785, 862
Hpy8I	GTNNAC	2 cut(s)	547, 589
HpyAV	CCTTC	2 cut(s)	166, 859
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	99, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 650, 659
HpyF3I	CTNAG	8 cut(s)	90, 360, 444, 471, 536, 604, 750, 826
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	4 cut(s)	269, 395, 452, 912
HspAI	GCGC	1 cut(s)	680
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	199, 287, 301, 457
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	2 cut(s)	430, 631
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	3 cut(s)	143, 695, 790
MalI	GATC	4 cut(s)	201, 289, 303, 459
MboI	GATC	4 cut(s)	199, 287, 301, 457
MboII	GAAGA	3 cut(s)	78, 99, 884
MflI	RGATCY	2 cut(s)	287, 301
MhlI	GDGCHC	2 cut(s)	83, 259
MluCI	AATT	1 cut(s)	689
MlyI	GAGTC	2 cut(s)	140, 682
MnlI	CCTC	8 cut(s)	265, 355, 413, 545, 761, 792, 835, 868
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	4 cut(s)	668, 692, 725, 837
MspI	CCGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	449, 650, 659
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	4 cut(s)	199, 287, 301, 457
NlaIII	CATG	4 cut(s)	269, 395, 452, 912
NlaIV	GGNNCC	2 cut(s)	258, 316
NmuCI	GTSAC	2 cut(s)	143, 695
NspI	RCATGY	3 cut(s)	269, 395, 452
PaeI	GCATGC	1 cut(s)	452
PciI	ACATGT	2 cut(s)	265, 391
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	212, 496
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	54, 601
PleI	GAGTC	2 cut(s)	140, 681
PpsI	GAGTC	2 cut(s)	140, 681
PscI	ACATGT	2 cut(s)	265, 391
PshBI	ATTAAT	1 cut(s)	725
PspN4I	GGNNCC	2 cut(s)	258, 316
PspPI	GGNCC	2 cut(s)	356, 779
PsuI	RGATCY	2 cut(s)	287, 301
RsaI	GTAC	1 cut(s)	883
RsaNI	GTAC	1 cut(s)	882
SaqAI	TTAA	4 cut(s)	668, 692, 725, 837
SatI	GCNGC	2 cut(s)	53, 600
Sau3AI	GATC	4 cut(s)	199, 287, 301, 457
Sau96I	GGNCC	2 cut(s)	356, 779
SchI	GAGTC	2 cut(s)	140, 682
SduI	GDGCHC	2 cut(s)	83, 259
SfaNI	GCATC	2 cut(s)	430, 631
SinI	GGWCC	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	783
SmoI	CTYRAG	1 cut(s)	783
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	1 cut(s)	689
SsiI	CCGC	4 cut(s)	50, 53, 153, 832
SspI	AATATT	1 cut(s)	723
SspMI	CTAG	1 cut(s)	663
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	758
TaqII	GACCGA	2 cut(s)	237, 506
TasI	AATT	1 cut(s)	689
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	212, 496
Tru1I	TTAA	4 cut(s)	668, 692, 725, 837
Tru9I	TTAA	4 cut(s)	668, 692, 725, 837
TscAI	CASTG	3 cut(s)	315, 471, 598
TseFI	GTSAC	2 cut(s)	143, 695
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	2 cut(s)	143, 695
TspDTI	ATGAA	1 cut(s)	897
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	3 cut(s)	315, 471, 598
VpaK11BI	GGWCC	1 cut(s)	356
VspI	ATTAAT	1 cut(s)	725
XceI	RCATGY	3 cut(s)	269, 395, 452
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.