Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008498

Physical Location & Seq

Genomic Coordinates Reverse (-)

8499000 .. 8501294

Gene Structure 2295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGACTAGTACGGAGAACAACAACAACGGCTCTGATGAAACTCAGACGACGAAGTTACACTTCGAGGATGCTGATGAATCAATGCACGATGGAGATGACAACAATGCCGATGTTGCTGATGACATTACCAGCGCCGATTACTACTTCGATTCTTACTCTCATTTCGGTATTCATGAAGAAATGTTAAAGGATGTAGTGAGGACAAAGAGTTATCAAGATGTTATTTACAAGAACAAGTTTCTTATCAAGGACAAAATTGTTCTTGATGTTGGAGCTGGAACTGGAATCTTGTCTCTCTTCTGTGCTAAAGCAGGAGCAGCTCACGTTTACGCAGTTGAGTGTTCTCAAATGGCTGACACAGCAAAGGAGATTGTTAAGTCGAATGGATTCTCAGATGTTATAACGGTTTTGAAAGGGAAGATTGAGGAGATCGAACTTCCAGTTCCTAAAGTGGATGTGATTATCTCTGAATGGATGGGTTACTTTCTGTTGTATGAAAATATGCTTGACACCGTCTTGTATGCTCGCAATAAATGGCTTGTTGATGGTGGAATTGTTCTACCAGATAAAGCTTCTCTTTATGTTACTGCCATTGAGGATGCTCATTATAAAGACGACAAAGTAGAGTTTTGGGACGACGTGTATGGGTTTGACATGTCGTGCATCAAGAGAAGAGCAATTACAGAACCGCTTGTTGACACCGTTGATGGTAACCAAATCGTGACTGATAGCAAGCTGCTGAAGACAATGGATATCTCTAAGATGGCTGCTGGAGATGCTTCCTTCACAGCTCCGTTTAAGCTCGTCGCACAACGAAATGACCATATCCATGCCCTTGTAGCCTACTTCGATGTGTCATTCACTATGTGTCACAAGAAGATGGGTTTCTCAACAGGACCGAAATCGCGGGCTACGCATTGGAAACAAACTGTGCTGTACCTGGAAGATGTGTTAACCATATGCGAGGGTGAAACAATCACAGGAAGCATGACCATTGCACAAAACAAAAAGAATCCCAGAGACGTCGACATAAAGCTCAGCTATTCTTTGAACGGCCAACATTGCAATATCTCAAGGACCCACTTCTATAAGATGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

Methyltransf_25 PrmA

Protein Analysis

366

Amino Acids

41.17

Weight (kDa)

5.11

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PrmA	PF06325	82 - 157	7e-09	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31	PF13847	83 - 157	4.1e-06	Methyltransferase domain
Methyltransf_25	PF13649	87 - 184	1.7e-09	Methyltransferase domain
Methyltransf_11	PF08241	88 - 186	1.3e-07	Methyltransferase domain
PRMT_C	PF22528	189 - 353	8e-60	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19670 AT4G29510
fragaria_vesca	FvH4_1g06990 FvH4_1g06990 FvH4_1g06990
malus_domestica	MD02G1074300.v1.1 MD15G1203800.v1.1
prunus_persica	Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1
pyrus_communis	pycom02g05870 pycom15g18060
rosa_chinensis	RchiOBHm_Chr2g0092941
rosa_laevigata	RLG00000016351
rosa_multiflora	Rmu_sc0000965.1_g000015
rosa_roxburghii	Rroxscaffold_2G00148690
rosa_rugosa	Rorug02G0030400 Rorug02G0030500
rosa_samantha	Rh2AG076500 Rh2BG077800 Rh2CG080000 Rh2DG075100
rosa_wichuraiana	Rw2G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	401, 609
AatII	GACGTC	1 cut(s)	1026
AccI	GTMKAC	1 cut(s)	1026
AccII	CGCG	1 cut(s)	907
AciI	CCGC	2 cut(s)	689, 907
AcoI	YGGCCR	1 cut(s)	1054
AcuI	CTGAAG	1 cut(s)	761
AcyI	GRCGYC	1 cut(s)	1023
AdeI	CACNNNGTG	1 cut(s)	867
AfaI	GTAC	2 cut(s)	10, 938
AflIII	ACRYGT	2 cut(s)	639, 654
AgsI	TTSAA	2 cut(s)	412, 1051
AhlI	ACTAGT	1 cut(s)	5
AjiI	CACGTC	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	939
AluBI	AGCT	8 cut(s)	275, 320, 572, 736, 791, 802, 1036, 1041
AluI	AGCT	8 cut(s)	275, 320, 572, 736, 791, 802, 1036, 1041
Alw26I	GTCTC	2 cut(s)	297, 1014
AoxI	GGCC	1 cut(s)	1054
ApeKI	GCWGC	3 cut(s)	317, 736, 767
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	134, 1098
AspS9I	GGNCC	2 cut(s)	896, 1077
AsuHPI	GGTGA	1 cut(s)	980
AvaII	GGWCC	2 cut(s)	896, 1077
BarI	GAAGNNNNNNTAC	2 cut(s)	664, 696
BbsI	GAAGAC	1 cut(s)	749
BbvI	GCAGC	3 cut(s)	329, 723, 754
BccI	CCATC	6 cut(s)	83, 469, 539, 701, 757, 874
BceAI	ACGGC	2 cut(s)	43, 1069
BciT130I	CCWGG	1 cut(s)	941
BcoDI	GTCTC	2 cut(s)	297, 1014
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	135
BisI	GCNGC	3 cut(s)	318, 737, 768
BlpI	GCTNAGC	1 cut(s)	1037
BlsI	GCNGC	3 cut(s)	319, 738, 769
Bme1390I	CCNGG	1 cut(s)	941
Bme18I	GGWCC	2 cut(s)	896, 1077
BmgBI	CACGTC	1 cut(s)	640
BmgT120I	GGNCC	2 cut(s)	896, 1077
BmiI	GGNNCC	1 cut(s)	1079
BmrFI	CCNGG	1 cut(s)	941
BmsI	GCATC	5 cut(s)	58, 589, 672, 766, 1083
BpiI	GAAGAC	1 cut(s)	749
BpmI	CTGGAG	1 cut(s)	792
Bpu1102I	GCTNAGC	1 cut(s)	1037
BpuEI	CTTGAG	1 cut(s)	1057
BsaHI	GRCGYC	1 cut(s)	1023
Bse1I	ACTGG	2 cut(s)	286, 440
Bse3DI	GCAATG	2 cut(s)	993, 1060
BseBI	CCWGG	1 cut(s)	941
BseGI	GGATG	5 cut(s)	73, 196, 460, 480, 604
BseMI	GCAATG	2 cut(s)	993, 1060
BseMII	CTCAG	3 cut(s)	56, 405, 1051
BseNI	ACTGG	2 cut(s)	286, 440
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	3 cut(s)	329, 723, 754
Bsh1236I	CGCG	1 cut(s)	907
BshFI	GGCC	1 cut(s)	1056
BslFI	GGGAC	1 cut(s)	647
BsmAI	GTCTC	2 cut(s)	297, 1014
BsmBI	CGTCTC	1 cut(s)	1014
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	1056
Bsp143I	GATC	1 cut(s)	429
Bsp1720I	GCTNAGC	1 cut(s)	1037
BspACI	CCGC	2 cut(s)	689, 907
BspANI	GGCC	1 cut(s)	1056
BspCNI	CTCAG	3 cut(s)	55, 404, 1050
BspFNI	CGCG	1 cut(s)	907
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	1079
BspQI	GCTCTTC	1 cut(s)	667
BsrDI	GCAATG	2 cut(s)	993, 1060
BsrI	ACTGG	2 cut(s)	286, 440
BssMI	GATC	1 cut(s)	429
BssNI	GRCGYC	1 cut(s)	1023
Bst2UI	CCWGG	1 cut(s)	941
Bst4CI	ACNGT	4 cut(s)	406, 514, 703, 931
Bst6I	CTCTTC	2 cut(s)	302, 667
BstACI	GRCGYC	1 cut(s)	1023
BstC8I	GCNNGC	3 cut(s)	526, 734, 909
BstDEI	CTNAG	4 cut(s)	42, 391, 759, 1037
BstEII	GGTNACC	1 cut(s)	710
BstF5I	GGATG	5 cut(s)	73, 196, 460, 480, 604
BstFNI	CGCG	1 cut(s)	907
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	134, 1098
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	2 cut(s)	297, 1014
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 317, 359, 776, 839, 913, 1062
BstNI	CCWGG	1 cut(s)	941
BstNSI	RCATGY	1 cut(s)	658
BstPI	GGTNACC	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	939
BstUI	CGCG	1 cut(s)	907
BstV1I	GCAGC	3 cut(s)	329, 723, 754
BstV2I	GAAGAC	1 cut(s)	749
BsuRI	GGCC	1 cut(s)	1056
BtrI	CACGTC	1 cut(s)	640
BtsCI	GGATG	5 cut(s)	73, 196, 460, 480, 604
Cac8I	GCNNGC	3 cut(s)	526, 734, 909
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	2 cut(s)	134, 1098
Cfr13I	GGNCC	2 cut(s)	896, 1077
Csp6I	GTAC	2 cut(s)	9, 937
CviAII	CATG	4 cut(s)	173, 655, 830, 988
CviQI	GTAC	2 cut(s)	9, 937
DdeI	CTNAG	4 cut(s)	42, 391, 759, 1037
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
DraIII	CACNNNGTG	1 cut(s)	867
EaeI	YGGCCR	1 cut(s)	1054
Eam1104I	CTCTTC	2 cut(s)	302, 667
EarI	CTCTTC	2 cut(s)	302, 667
Eco32I	GATATC	1 cut(s)	754
Eco47I	GGWCC	2 cut(s)	896, 1077
Eco57I	CTGAAG	1 cut(s)	761
Eco91I	GGTNACC	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	1077
EcoO65I	GGTNACC	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	939
EcoRV	GATATC	1 cut(s)	754
Esp3I	CGTCTC	1 cut(s)	1014
FaeI	CATG	4 cut(s)	176, 658, 833, 991
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 561, 593
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	4 cut(s)	172, 654, 829, 987
FauI	CCCGC	1 cut(s)	900
FauNDI	CATATG	1 cut(s)	959
FblI	GTMKAC	1 cut(s)	1026
Fnu4HI	GCNGC	3 cut(s)	318, 737, 768
FokI	GGATG	5 cut(s)	80, 203, 467, 487, 611
Fsp4HI	GCNGC	3 cut(s)	318, 737, 768
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	133, 1097
GluI	GCNGC	3 cut(s)	318, 737, 768
GsuI	CTGGAG	1 cut(s)	792
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	1056
HhaI	GCGC	2 cut(s)	134, 1098
Hin1I	GRCGYC	1 cut(s)	1023
Hin1II	CATG	4 cut(s)	176, 658, 833, 991
Hin6I	GCGC	2 cut(s)	132, 1096
HinP1I	GCGC	2 cut(s)	132, 1096
HincII	GTYRAC	3 cut(s)	697, 954, 1027
HindII	GTYRAC	3 cut(s)	697, 954, 1027
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	5 cut(s)	77, 149, 285, 387, 1012
HpaI	GTTAAC	1 cut(s)	954
HphI	GGTGA	1 cut(s)	980
Hpy166II	GTNNAC	4 cut(s)	328, 697, 954, 1027
Hpy188I	TCNGA	4 cut(s)	34, 45, 394, 469
Hpy188III	TCNNGA	5 cut(s)	173, 215, 263, 667, 721
Hpy8I	GTNNAC	4 cut(s)	328, 697, 954, 1027
Hpy99I	CGWCG	4 cut(s)	52, 641, 809, 1028
HpyAV	CCTTC	1 cut(s)	793
HpyCH4III	ACNGT	4 cut(s)	406, 514, 703, 931
HpyCH4IV	ACGT	3 cut(s)	324, 639, 1023
HpyCH4V	TGCA	4 cut(s)	85, 663, 998, 1065
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 317, 359, 776, 839, 913, 1062
HpyF3I	CTNAG	4 cut(s)	42, 391, 759, 1037
HpySE526I	ACGT	3 cut(s)	324, 639, 1023
Hsp92I	GRCGYC	1 cut(s)	1023
Hsp92II	CATG	4 cut(s)	176, 658, 833, 991
HspAI	GCGC	2 cut(s)	132, 1096
KspAI	GTTAAC	1 cut(s)	954
Kzo9I	GATC	1 cut(s)	429
LguI	GCTCTTC	1 cut(s)	667
LmnI	GCTCC	3 cut(s)	272, 314, 796
Lsp1109I	GCAGC	3 cut(s)	329, 723, 754
LweI	GCATC	5 cut(s)	58, 589, 672, 766, 1083
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	3 cut(s)	324, 639, 1023
MaeIII	GTNAC	6 cut(s)	54, 479, 583, 710, 721, 869
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	7 cut(s)	188, 289, 430, 684, 754, 889, 956
MluCI	AATT	3 cut(s)	255, 552, 678
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	58, 192, 418, 589, 958
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	4 cut(s)	185, 375, 798, 953
MslI	CAYNNNNRTG	1 cut(s)	828
MspR9I	CCNGG	1 cut(s)	941
MvaI	CCWGG	1 cut(s)	941
MvnI	CGCG	1 cut(s)	907
MwoI	GCNNNNNNNGC	7 cut(s)	113, 317, 359, 776, 839, 913, 1062
NdeI	CATATG	1 cut(s)	959
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	4 cut(s)	176, 658, 833, 991
NlaIV	GGNNCC	1 cut(s)	1079
NmuCI	GTSAC	2 cut(s)	721, 869
NspI	RCATGY	1 cut(s)	658
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	5 cut(s)	77, 149, 285, 387, 1012
PflFI	GACNNNGTC	1 cut(s)	512
PkrI	GCNGC	3 cut(s)	319, 738, 769
PpuMI	RGGWCCY	1 cut(s)	1077
PscI	ACATGT	1 cut(s)	654
PsiI	TTATAA	2 cut(s)	401, 609
Psp5II	RGGWCCY	1 cut(s)	1077
Psp6I	CCWGG	1 cut(s)	939
PspEI	GGTNACC	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	939
PspN4I	GGNNCC	1 cut(s)	1079
PspPI	GGNCC	2 cut(s)	896, 1077
PspPPI	RGGWCCY	1 cut(s)	1077
PsyI	GACNNNGTC	1 cut(s)	512
RsaI	GTAC	2 cut(s)	10, 938
RsaNI	GTAC	2 cut(s)	9, 937
RseI	CAYNNNNRTG	1 cut(s)	828
SalI	GTCGAC	1 cut(s)	1025
SapI	GCTCTTC	1 cut(s)	667
SaqAI	TTAA	4 cut(s)	185, 375, 798, 953
SatI	GCNGC	3 cut(s)	318, 737, 768
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	2 cut(s)	896, 1077
ScrFI	CCNGG	1 cut(s)	941
SfaNI	GCATC	5 cut(s)	58, 589, 672, 766, 1083
SinI	GGWCC	2 cut(s)	896, 1077
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	1 cut(s)	1072
SmoI	CTYRAG	1 cut(s)	1072
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	3 cut(s)	255, 552, 678
SsiI	CCGC	2 cut(s)	689, 907
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	939
TaaI	ACNGT	4 cut(s)	406, 514, 703, 931
TaiI	ACGT	3 cut(s)	327, 642, 1026
TaqI	TCGA	6 cut(s)	63, 147, 380, 432, 849, 1026
TaqII	GACCGA	1 cut(s)	913
TasI	AATT	3 cut(s)	255, 552, 678
TfiI	GAWTC	5 cut(s)	77, 149, 285, 387, 1012
Tru1I	TTAA	4 cut(s)	185, 375, 798, 953
Tru9I	TTAA	4 cut(s)	185, 375, 798, 953
TseFI	GTSAC	2 cut(s)	721, 869
TseI	GCWGC	3 cut(s)	317, 736, 767
Tsp45I	GTSAC	2 cut(s)	721, 869
TspDTI	ATGAA	5 cut(s)	51, 90, 161, 189, 510
TspGWI	ACGGA	2 cut(s)	26, 783
Tth111I	GACNNNGTC	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	896, 1077
XceI	RCATGY	1 cut(s)	658
XmiI	GTMKAC	1 cut(s)	1026
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	6
ZraI	GACGTC	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.