Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008498

Physical Location & Seq

Genomic Coordinates Forward (+)

6550332 .. 6553676

Gene Structure 3345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTTGCAGGAGATGTTGAAGGATCTAGTGAGAACCAAGACGTATCAAAATGTTATTTATCAGAATAAGTTTCTATTCAAGGACAAAGTTGTTCTTGATGTCGGAGCTGGGACTGGAATTTTGTCCCTATTCTGTGCAAAAGCTGGTGCCAAGCATGTTTATGCAGTTGAGTGCTCAGATATGGCTGAGAGGGCAAAAGAGATTGTTGAAACTAACGGGTTTTCTAATGTTGTAACCGTTCTGAAAGGAAAGATTGAAGAACTTGAGCTTCCAGTTGCTAAAGTGGATATAATTATTTCTGAGTGGATGGGATACTTTTTGTTGTTTGAGAACATGTTGAATACCGTCCTCTATGCTCGTGATAAATGGCTTGTAGATGATGGAATTTTGCTACCAGACAAATGTTCTCTCTTTCTGACAGCTATTGAGGATGCAGAGTACAAAGAAGATAAGATAGAATTTTGGAATAATGTATATGGCTTTGACATGAGCTGCATCAAGAAGCAAGCCATGATGGAGCCTCTTGTGGACACGGTTGACCAAAACCAAATTGTTACTAATAGCCAGCTACTCAAGACAATGGATATATCTAAGATGACTCCTGGAGATGCTTCCTTCACAGCTCCTTTTAAGCTTATTGCTGAACGTGATGATTTCATTCATGCTCTTGTAGCCTACTTTGACGTGTCATTTACAAAATGTCATAAATTGATGGGCTTCTCCACAGGGCCAAGATCGCGATCTACACATTGGAAGCAAACAGTCCTGTACTTGGAAGATGTGCTGACAGTATGTCAAGGAGAGTCGATTGTTGGAACCATGACTGTAGCGCAAAACAAAAAGAATCCCCGTGATATTGATATAATGCTCAAGTATTCATTGAATGGTCAGCGATGCAGTGTCTCAAGGGTTCAATATTACAAGATGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

Methyltransf_25 PrmA

Protein Analysis

310

Amino Acids

35.36

Weight (kDa)

5.91

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PrmA	PF06325	26 - 101	2.2e-09	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31	PF13847	27 - 102	1.6e-08	Methyltransferase domain
Methyltransf_25	PF13649	31 - 104	5.4e-10	Methyltransferase domain
Methyltransf_11	PF08241	32 - 117	2.7e-08	Methyltransferase domain
PRMT_C	PF22528	133 - 297	2.5e-59	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19670 AT4G29510
fragaria_vesca	FvH4_1g06990 FvH4_1g06990 FvH4_1g06990
malus_domestica	MD02G1074300.v1.1 MD15G1203800.v1.1
prunus_persica	Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1
pyrus_communis	pycom02g05870 pycom15g18060
rosa_chinensis	RchiOBHm_Chr2g0092941
rosa_laevigata	RLG00000016351
rosa_multiflora	Rmu_sc0000965.1_g000015
rosa_roxburghii	Rroxscaffold_2G00148690
rosa_rugosa	Rorug02G0030400 Rorug02G0030500
rosa_samantha	Rh2AG076500 Rh2BG077800 Rh2CG080000 Rh2DG075100
rosa_wichuraiana	Rw2G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccII	CGCG	1 cut(s)	739
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	3 cut(s)	117, 384, 458
AfaI	GTAC	2 cut(s)	440, 770
AfiI	CCNNNNNNNGG	1 cut(s)	772
AflIII	ACRYGT	2 cut(s)	333, 684
AgsI	TTSAA	7 cut(s)	19, 79, 209, 257, 340, 883, 914
AhdI	GACNNNNNGTC	1 cut(s)	792
AjiI	CACGTC	1 cut(s)	685
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	8 cut(s)	107, 143, 268, 422, 492, 568, 623, 634
AluI	AGCT	8 cut(s)	107, 143, 268, 422, 492, 568, 623, 634
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	907
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	728
ApeKI	GCWGC	1 cut(s)	492
ApoI	RAATTY	3 cut(s)	117, 384, 458
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
AspLEI	GCGC	2 cut(s)	832, 930
AspS9I	GGNCC	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	146
BauI	CACGAG	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	4 cut(s)	301, 374, 508, 706
BciT130I	CCWGG	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	907
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	825
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	603
BmeRI	GACNNNNNGTC	1 cut(s)	792
BmgBI	CACGTC	1 cut(s)	685
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	3 cut(s)	148, 519, 817
BmrFI	CCNGG	1 cut(s)	603
BmsI	GCATC	5 cut(s)	421, 504, 598, 884, 915
BpmI	CTGGAG	1 cut(s)	624
BpuEI	CTTGAG	4 cut(s)	284, 557, 854, 889
BsaBI	GATNNNNATC	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	1 cut(s)	772
Bse1I	ACTGG	2 cut(s)	118, 272
Bse8I	GATNNNNATC	1 cut(s)	739
BseBI	CCWGG	1 cut(s)	603
BseGI	GGATG	2 cut(s)	312, 436
BseJI	GATNNNNATC	1 cut(s)	739
BseLI	CCNNNNNNNGG	1 cut(s)	772
BseMII	CTCAG	3 cut(s)	177, 189, 291
BseNI	ACTGG	2 cut(s)	118, 272
BseXI	GCAGC	1 cut(s)	479
BseYI	CCCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	739
BshFI	GGCC	1 cut(s)	730
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	109, 124
BslI	CCNNNNNNNGG	1 cut(s)	772
BsmAI	GTCTC	1 cut(s)	907
BsmFI	GGGAC	2 cut(s)	109, 124
BsnI	GGCC	1 cut(s)	730
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	22, 734, 740
Bsp68I	TCGCGA	1 cut(s)	739
BspANI	GGCC	1 cut(s)	730
BspCNI	CTCAG	3 cut(s)	178, 188, 292
BspFNI	CGCG	1 cut(s)	739
BspLI	GGNNCC	3 cut(s)	148, 519, 817
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	118, 272
BssMI	GATC	3 cut(s)	22, 734, 740
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	6 cut(s)	238, 346, 535, 763, 790, 826
BstC8I	GCNNGC	2 cut(s)	507, 566
BstDEI	CTNAG	4 cut(s)	175, 186, 300, 591
BstF5I	GGATG	2 cut(s)	312, 436
BstFNI	CGCG	1 cut(s)	739
BstHHI	GCGC	2 cut(s)	832, 930
BstKTI	GATC	3 cut(s)	25, 737, 743
BstMAI	GTCTC	1 cut(s)	907
BstMBI	GATC	3 cut(s)	22, 734, 740
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 671, 736
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	2 cut(s)	158, 337
BstSCI	CCNGG	1 cut(s)	601
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	1 cut(s)	739
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	730
BtgZI	GCGATG	1 cut(s)	907
BtrI	CACGTC	1 cut(s)	685
BtsCI	GGATG	2 cut(s)	312, 436
BtsI	GCAGTG	1 cut(s)	904
BtsIMutI	CAGTG	1 cut(s)	904
BtuMI	TCGCGA	1 cut(s)	739
Cac8I	GCNNGC	2 cut(s)	507, 566
CfoI	GCGC	2 cut(s)	832, 930
Cfr13I	GGNCC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	439, 769
CviAII	CATG	6 cut(s)	155, 334, 487, 511, 662, 820
CviQI	GTAC	2 cut(s)	439, 769
DdeI	CTNAG	4 cut(s)	175, 186, 300, 591
DpnI	GATC	3 cut(s)	24, 736, 742
DpnII	GATC	3 cut(s)	22, 734, 740
DriI	GACNNNNNGTC	1 cut(s)	792
Eam1105I	GACNNNNNGTC	1 cut(s)	792
EcoRII	CCWGG	1 cut(s)	601
FaeI	CATG	6 cut(s)	158, 337, 490, 514, 665, 823
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	2 cut(s)	109, 124
FatI	CATG	6 cut(s)	154, 333, 486, 510, 661, 819
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	2 cut(s)	319, 443
Fsp4HI	GCNGC	1 cut(s)	493
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	2 cut(s)	831, 929
GluI	GCNGC	1 cut(s)	493
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	730
HhaI	GCGC	2 cut(s)	832, 930
Hin1II	CATG	6 cut(s)	158, 337, 490, 514, 665, 823
Hin6I	GCGC	2 cut(s)	830, 928
HinP1I	GCGC	2 cut(s)	830, 928
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	3 cut(s)	598, 803, 844
Hpy166II	GTNNAC	2 cut(s)	529, 538
Hpy188I	TCNGA	6 cut(s)	63, 104, 178, 243, 301, 417
Hpy188III	TCNNGA	5 cut(s)	95, 359, 499, 574, 738
Hpy8I	GTNNAC	2 cut(s)	529, 538
HpyAV	CCTTC	2 cut(s)	13, 625
HpyCH4III	ACNGT	6 cut(s)	238, 346, 535, 763, 790, 826
HpyCH4IV	ACGT	3 cut(s)	41, 646, 684
HpyCH4V	TGCA	6 cut(s)	7, 137, 164, 434, 495, 897
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 671, 736
HpyF3I	CTNAG	4 cut(s)	175, 186, 300, 591
HpySE526I	ACGT	3 cut(s)	41, 646, 684
Hsp92II	CATG	6 cut(s)	158, 337, 490, 514, 665, 823
HspAI	GCGC	2 cut(s)	830, 928
Kzo9I	GATC	3 cut(s)	22, 734, 740
LmnI	GCTCC	3 cut(s)	104, 517, 628
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	5 cut(s)	421, 504, 598, 884, 915
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	3 cut(s)	41, 646, 684
MaeIII	GTNAC	2 cut(s)	232, 553
MalI	GATC	3 cut(s)	24, 736, 742
MboI	GATC	3 cut(s)	22, 734, 740
MboII	GAAGA	3 cut(s)	269, 458, 788
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	6 cut(s)	117, 291, 384, 458, 549, 707
MlyI	GAGTC	2 cut(s)	592, 812
MmeI	TCCRAC	2 cut(s)	82, 793
MnlI	CCTC	4 cut(s)	183, 359, 421, 531
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	739
MwoI	GCNNNNNNNGC	3 cut(s)	191, 671, 736
NdeII	GATC	3 cut(s)	22, 734, 740
NlaIII	CATG	6 cut(s)	158, 337, 490, 514, 665, 823
NlaIV	GGNNCC	3 cut(s)	148, 519, 817
NruI	TCGCGA	1 cut(s)	739
NspI	RCATGY	2 cut(s)	158, 337
PciI	ACATGT	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	844
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	1 cut(s)	494
PleI	GAGTC	2 cut(s)	592, 811
PpsI	GAGTC	2 cut(s)	592, 811
PscI	ACATGT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	601
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	3 cut(s)	148, 519, 817
PspPI	GGNCC	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	22
RruI	TCGCGA	1 cut(s)	739
RsaI	GTAC	2 cut(s)	440, 770
RsaNI	GTAC	2 cut(s)	439, 769
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	3 cut(s)	22, 734, 740
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	2 cut(s)	592, 812
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	5 cut(s)	421, 504, 598, 884, 915
SfcI	CTRYAG	1 cut(s)	825
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	4 cut(s)	263, 572, 869, 904
SmoI	CTYRAG	4 cut(s)	263, 572, 869, 904
Sse9I	AATT	6 cut(s)	117, 291, 384, 458, 549, 707
SspI	AATATT	1 cut(s)	917
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	601
TaaI	ACNGT	6 cut(s)	238, 346, 535, 763, 790, 826
TaiI	ACGT	3 cut(s)	44, 649, 687
TaqI	TCGA	1 cut(s)	806
TasI	AATT	6 cut(s)	117, 291, 384, 458, 549, 707
TatI	WGTACW	2 cut(s)	438, 768
TfiI	GAWTC	1 cut(s)	844
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	904
TseI	GCWGC	1 cut(s)	492
TspDTI	ATGAA	3 cut(s)	646, 650, 867
TspRI	CASTG	1 cut(s)	904
XapI	RAATTY	3 cut(s)	117, 384, 458
XceI	RCATGY	2 cut(s)	158, 337
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.