Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008498

Physical Location & Seq

Genomic Coordinates Forward (+)

14491622 .. 14494001

Gene Structure 2380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G29510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGACTAAGAACAGTAACCACGACGAGAATGAGTTCATCAGCTTTGAACCAAATCAGAACACGAAGATACGCTTTGAAGATGCTGATGAAGACGAAGTTGCTGAAGGGTCTGGTGTTGCCGGCGAGGAAACTCCCCAAGATGAGTCCATGTTCGACGCCGGAGAGAGCGCCGACACCGCTGAAGTAACTGATGATACCACCAGTGCCGATTACTACTTCGATTCTTACTCTCACTTTGGAATCCATGAAGAGATGTTGAAGGATGTTGTGAGAACAAAGACTTATCAGAATGTTATTTATCAGAACAAGTTTCTTATCAAGGACAAAATTGTTCTTGATGTTGGAGCTGGAACCGGAATTTTGTCTCTGTTCTGTGCCAAGGCAGGAGCTGCTCATGTCTACGCTGTTGAGTGTTCTCAAATGGCTGACATGGCAAAGGAGATTGTTAAAGCTAATGGATTTTCTGATGTTATTACGGTATTGAAAGGGAAGATTGAGGAGATAGAGCTTCCCACTCCTAAAGTGGATGTGATTATATCGGAATGGATGGGTTACTTTTTGTTGTTTGAAAATATGTTGGACAGTGTCTTGTATGCTCGTGATAAATGGCTTGTTGAAGGTGGAGTTGTGCTACCAGACAAAGCCTCTCTGCATCTTACAGCCATAGAGGATTCAGAGTACAAAGAAGACAAAATCGAATTTTGGAACAGTGTGTATGGTTTTGACATGTCATGTATTAAGAAAAAAGCTATGATGGAACCACTTGTTGACACAGTCGACCAAAACCAAATCGTCACCGATAGTAGGCTTCTAAAGACGATGGATATCTCAAAGATGTCCTCTGGTGATGCTTCCTTCACAGCTCCCTTTAAGCTTGTTGCACAACGCAATGACTACATCCACGCCCTTGTAGCCTACTTTGATGTATCGTTTACCATGTGCCACAAGCTGCTGGGCTTCTCAACAGGACCGAAATCCCGAGCTACACACTGGAAACAAACAGTTCTGTATCTAGAAGATGTGTTAACCATATGTGAGGGTGAGACAATCACTGGAACTATGTCCGTTTCTCCTAACAAGAAGAATCCTCGAGACATTGACATAAAGCTAAGCTATTCTTTGAATGGCCAGCATTGCAAGATCTCAAGGACCCAACACTACAAAATGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

Methyltransf_25 PrmA

Protein Analysis

390

Amino Acids

43.89

Weight (kDa)

4.83

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PrmA	PF06325	105 - 181	3.6e-09	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31	PF13847	107 - 181	6.6e-06	Methyltransferase domain
Methyltransf_25	PF13649	111 - 197	1e-09	Methyltransferase domain
Methyltransf_11	PF08241	112 - 209	6.5e-08	Methyltransferase domain
PRMT_C	PF22528	213 - 377	1.4e-59	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19670 AT4G29510
fragaria_vesca	FvH4_1g06990 FvH4_1g06990 FvH4_1g06990
malus_domestica	MD02G1074300.v1.1 MD15G1203800.v1.1
prunus_persica	Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1
pyrus_communis	pycom02g05870 pycom15g18060
rosa_chinensis	RchiOBHm_Chr2g0092941
rosa_laevigata	RLG00000016351
rosa_multiflora	Rmu_sc0000965.1_g000015
rosa_roxburghii	Rroxscaffold_2G00148690
rosa_rugosa	Rorug02G0030400 Rorug02G0030500
rosa_samantha	Rh2AG076500 Rh2BG077800 Rh2CG080000 Rh2DG075100
rosa_wichuraiana	Rw2G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	399, 777
AciI	CCGC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	1126
AcsI	RAATTY	2 cut(s)	357, 698
AcuI	CTGAAG	2 cut(s)	123, 201
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	1 cut(s)	804
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	7 cut(s)	47, 77, 259, 484, 569, 617, 1123
Alw26I	GTCTC	3 cut(s)	369, 1037, 1086
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	2 cut(s)	978, 1089
AoxI	GGCC	1 cut(s)	1126
ApeKI	GCWGC	2 cut(s)	389, 949
ApoI	RAATTY	2 cut(s)	357, 698
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	968, 1149
AsuHPI	GGTGA	3 cut(s)	787, 857, 1052
AvaI	CYCGRG	2 cut(s)	978, 1089
AvaII	GGWCC	2 cut(s)	968, 1149
BalI	TGGCCA	1 cut(s)	1128
BauI	CACGAG	1 cut(s)	597
BbsI	GAAGAC	2 cut(s)	96, 693
BbvI	GCAGC	2 cut(s)	376, 936
BccI	CCATC	3 cut(s)	541, 748, 814
BcoDI	GTCTC	3 cut(s)	369, 1037, 1086
BfaI	CTAG	1 cut(s)	1013
BfoI	RGCGCY	1 cut(s)	171
BglII	AGATCT	1 cut(s)	1140
BisI	GCNGC	2 cut(s)	390, 950
BlpI	GCTNAGC	1 cut(s)	1109
BlsI	GCNGC	2 cut(s)	391, 951
Bme18I	GGWCC	2 cut(s)	968, 1149
BmeT110I	CYCGRG	2 cut(s)	978, 1089
BmgT120I	GGNCC	2 cut(s)	968, 1149
BmiI	GGNNCC	3 cut(s)	352, 759, 1151
BmsI	GCATC	3 cut(s)	70, 661, 838
BpiI	GAAGAC	2 cut(s)	96, 693
Bpu1102I	GCTNAGC	1 cut(s)	1109
BpuEI	CTTGAG	1 cut(s)	1129
BsaBI	GATNNNNATC	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	804
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	3 cut(s)	201, 995, 1057
Bse3DI	GCAATG	2 cut(s)	895, 1132
Bse8I	GATNNNNATC	1 cut(s)	824
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	4 cut(s)	268, 532, 552, 897
BseJI	GATNNNNATC	1 cut(s)	824
BseLI	CCNNNNNNNGG	1 cut(s)	804
BseMI	GCAATG	2 cut(s)	895, 1132
BseNI	ACTGG	3 cut(s)	201, 995, 1057
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	376, 936
BseYI	CCCAGC	1 cut(s)	952
BshFI	GGCC	1 cut(s)	1128
BsiHKCI	CYCGRG	2 cut(s)	978, 1089
BsiSI	CCGG	3 cut(s)	120, 159, 354
BslI	CCNNNNNNNGG	1 cut(s)	804
BsmAI	GTCTC	3 cut(s)	369, 1037, 1086
BsnI	GGCC	1 cut(s)	1128
BsoBI	CYCGRG	2 cut(s)	978, 1089
Bsp143I	GATC	1 cut(s)	1140
Bsp1720I	GCTNAGC	1 cut(s)	1109
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	1128
BspLI	GGNNCC	3 cut(s)	352, 759, 1151
BsrDI	GCAATG	2 cut(s)	895, 1132
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	3 cut(s)	201, 995, 1057
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	1 cut(s)	1140
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	597
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	597
Bst4CI	ACNGT	6 cut(s)	14, 478, 584, 710, 775, 1003
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	121, 1130
BstDEI	CTNAG	2 cut(s)	6, 1109
BstF5I	GGATG	4 cut(s)	268, 532, 552, 897
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	1143
BstMAI	GTCTC	3 cut(s)	369, 1037, 1086
BstMBI	GATC	1 cut(s)	1140
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 389, 431, 911, 1134
BstNSI	RCATGY	1 cut(s)	730
BstV1I	GCAGC	2 cut(s)	376, 936
BstV2I	GAAGAC	2 cut(s)	96, 693
BstX2I	RGATCY	1 cut(s)	1140
BstYI	RGATCY	1 cut(s)	1140
BsuRI	GGCC	1 cut(s)	1128
BtsCI	GGATG	4 cut(s)	268, 532, 552, 897
BtsIMutI	CAGTG	5 cut(s)	208, 589, 715, 988, 1050
Cac8I	GCNNGC	2 cut(s)	121, 1130
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	968, 1149
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	7 cut(s)	148, 245, 395, 430, 727, 732, 937
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	2 cut(s)	6, 1109
DpnI	GATC	1 cut(s)	1142
DpnII	GATC	1 cut(s)	1140
EaeI	YGGCCR	1 cut(s)	1126
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	826
Eco47I	GGWCC	2 cut(s)	968, 1149
Eco57I	CTGAAG	2 cut(s)	123, 201
Eco88I	CYCGRG	2 cut(s)	978, 1089
EcoO109I	RGGNCCY	1 cut(s)	1149
EcoRV	GATATC	1 cut(s)	826
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	7 cut(s)	151, 248, 398, 433, 730, 735, 940
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 1102, 1134
FatI	CATG	7 cut(s)	147, 244, 394, 429, 726, 731, 936
FauNDI	CATATG	1 cut(s)	1031
FblI	GTMKAC	2 cut(s)	399, 777
Fnu4HI	GCNGC	2 cut(s)	390, 950
FokI	GGATG	4 cut(s)	275, 539, 559, 884
Fsp4HI	GCNGC	2 cut(s)	390, 950
FspBI	CTAG	1 cut(s)	1013
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	390, 950
GsaI	CCCAGC	1 cut(s)	956
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	1128
HapII	CCGG	3 cut(s)	120, 159, 354
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	7 cut(s)	151, 248, 398, 433, 730, 735, 940
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	3 cut(s)	769, 778, 1026
HindII	GTYRAC	3 cut(s)	769, 778, 1026
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	5 cut(s)	143, 221, 240, 671, 1084
HpaI	GTTAAC	1 cut(s)	1026
HpaII	CCGG	3 cut(s)	120, 159, 354
HphI	GGTGA	3 cut(s)	787, 857, 1052
Hpy166II	GTNNAC	5 cut(s)	400, 769, 778, 933, 1026
Hpy188I	TCNGA	6 cut(s)	57, 288, 303, 466, 541, 676
Hpy188III	TCNNGA	5 cut(s)	335, 599, 978, 1013, 1091
Hpy8I	GTNNAC	5 cut(s)	400, 769, 778, 933, 1026
Hpy99I	CGWCG	2 cut(s)	26, 158
HpyAV	CCTTC	4 cut(s)	98, 253, 611, 865
HpyCH4III	ACNGT	6 cut(s)	14, 478, 584, 710, 775, 1003
HpyCH4V	TGCA	3 cut(s)	652, 881, 1137
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 389, 431, 911, 1134
HpyF3I	CTNAG	2 cut(s)	6, 1109
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	7 cut(s)	151, 248, 398, 433, 730, 735, 940
HspAI	GCGC	1 cut(s)	168
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
KspAI	GTTAAC	1 cut(s)	1026
Kzo9I	GATC	1 cut(s)	1140
LmnI	GCTCC	3 cut(s)	344, 386, 868
Lsp1109I	GCAGC	2 cut(s)	376, 936
LweI	GCATC	3 cut(s)	70, 661, 838
MaeI	CTAG	1 cut(s)	1013
MaeIII	GTNAC	4 cut(s)	14, 184, 551, 793
MalI	GATC	1 cut(s)	1142
MboI	GATC	1 cut(s)	1140
MboII	GAAGA	8 cut(s)	76, 89, 101, 260, 502, 698, 1028, 1093
MflI	RGATCY	1 cut(s)	1140
MlsI	TGGCCA	1 cut(s)	1128
MluCI	AATT	3 cut(s)	327, 357, 698
MluNI	TGGCCA	1 cut(s)	1128
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	322, 558
MnlI	CCTC	7 cut(s)	118, 490, 655, 661, 850, 1030, 1098
Mox20I	TGGCCA	1 cut(s)	1128
MroNI	GCCGGC	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	1128
MseI	TTAA	5 cut(s)	447, 738, 870, 1025, 1171
Msp20I	TGGCCA	1 cut(s)	1128
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	3 cut(s)	120, 159, 354
MwoI	GCNNNNNNNGC	5 cut(s)	176, 389, 431, 911, 1134
NaeI	GCCGGC	1 cut(s)	121
NdeI	CATATG	1 cut(s)	1031
NdeII	GATC	1 cut(s)	1140
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	7 cut(s)	151, 248, 398, 433, 730, 735, 940
NlaIV	GGNNCC	3 cut(s)	352, 759, 1151
NmuCI	GTSAC	1 cut(s)	793
NspI	RCATGY	1 cut(s)	730
PaeR7I	CTCGAG	1 cut(s)	1089
PciI	ACATGT	1 cut(s)	726
PdiI	GCCGGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	4 cut(s)	221, 240, 671, 1084
PflFI	GACNNNGTC	2 cut(s)	584, 773
PkrI	GCNGC	2 cut(s)	391, 951
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	1149
PscI	ACATGT	1 cut(s)	726
Psp5II	RGGWCCY	1 cut(s)	1149
PspFI	CCCAGC	1 cut(s)	952
PspN4I	GGNNCC	3 cut(s)	352, 759, 1151
PspPI	GGNCC	2 cut(s)	968, 1149
PspPPI	RGGWCCY	1 cut(s)	1149
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	1140
PsyI	GACNNNGTC	2 cut(s)	584, 773
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
SalI	GTCGAC	1 cut(s)	776
SaqAI	TTAA	5 cut(s)	447, 738, 870, 1025, 1171
SatI	GCNGC	2 cut(s)	390, 950
Sau3AI	GATC	1 cut(s)	1140
Sau96I	GGNCC	2 cut(s)	968, 1149
SchI	GAGTC	1 cut(s)	152
SfaNI	GCATC	3 cut(s)	70, 661, 838
Sfr274I	CTCGAG	1 cut(s)	1089
SinI	GGWCC	2 cut(s)	968, 1149
SlaI	CTCGAG	1 cut(s)	1089
SmlI	CTYRAG	2 cut(s)	1089, 1144
SmoI	CTYRAG	2 cut(s)	1089, 1144
Sse9I	AATT	3 cut(s)	327, 357, 698
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	1013
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	6 cut(s)	14, 478, 584, 710, 775, 1003
TaqI	TCGA	5 cut(s)	153, 219, 696, 777, 1090
TaqII	GACCGA	1 cut(s)	985
TasI	AATT	3 cut(s)	327, 357, 698
TatI	WGTACW	1 cut(s)	678
TfiI	GAWTC	4 cut(s)	221, 240, 671, 1084
Tru1I	TTAA	5 cut(s)	447, 738, 870, 1025, 1171
Tru9I	TTAA	5 cut(s)	447, 738, 870, 1025, 1171
TscAI	CASTG	5 cut(s)	208, 589, 715, 995, 1057
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	2 cut(s)	389, 949
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	3 cut(s)	25, 102, 261
TspGWI	ACGGA	1 cut(s)	1054
TspRI	CASTG	5 cut(s)	208, 589, 715, 995, 1057
Tth111I	GACNNNGTC	2 cut(s)	584, 773
VpaK11BI	GGWCC	2 cut(s)	968, 1149
XapI	RAATTY	2 cut(s)	357, 698
XbaI	TCTAGA	1 cut(s)	1012
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XhoI	CTCGAG	1 cut(s)	1089
XmiI	GTMKAC	2 cut(s)	399, 777
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.