Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008498

Physical Location & Seq

Genomic Coordinates Forward (+)

5963796 .. 5966843

Gene Structure 3048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1074300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGTCGCCGAAAGAACACCAACAACAGCGGCAGCAGCAGCAACCAGACTTCGGCGGCTGCGGGATTCGGTCACCTCGACGAAGCCGTCAAAGACGTCTCCGAGAGCTCCAACCACGACGAGTCCATGTGCGACCCCGAGCTCCACAAGGCCGCTGATGACTCAATGGGGGAGCCGGAGGTCTCCTTCGTCGAAGCCGATGGAAAGACCAGCGCCGACTATTACTTTGACTCCTACTCTCACTTTGGTATTCATGAAGAAATGTTGAAAGATTTAGTGAGGACTAAGACATATCAGAATGTTATCTATCAGAATAAGTTTCTAATAAAGGACAAGATTGTTCTTGACGTGGGAGCTGGGACTGGAATTTTGTCCCTGTTTTGTGCAAAAGCGGGTGCAAAGCATGTTTATGCGGTAGAGTGCTCCGACATGGCTGACATGGCAAAAGAGATTGTTGAAACTAACGGATATTCTAATGTAATTACAGTTCTGAAGGGGAAGATTGAAGAACTTGAGCTTCCCGTCCCGAAAGTGGATATAATTATCTCTGAATGGATGGGATATTTCTTGTTGTTTGAGAATATGTTAAATACAGTCCTCTATGCTCGTGATAAATGGCTTGTAGATGATGGCATTCTACTGCCAGACAAAGCATCTCTCTTTTTGACAGCTATTGAGGATGCAGAGTACAAAGAGGACAAGATAGAATTTTGGAACAATGTTTATAGCTTTGACATGAGCTGCATCAAGAAGCAAGCCATGATGGAGCCCCTTGTGGACACCGTTGACCAAAACCAAATTGTTACAAACAGTCAGCTACTCAAGACAATGGATATATCCAAGATGACTTCAGGAGATGCTTCCTTCACAGCCCCTTTCAAGCTTGTTGCTGAACGTGACGATTTCGTTCATGCCCTTGTAGCCTACTTTGATGTTTCATTTACGAAGTGTCATAAATTGATGGGCTTCTCCACAGGGCCAAGATCACGGTCTACTCACTGGAAGCAAACAGTCCTGTACCTGGAAGATGTGCTAACAGTATGTCAAGGAGAGTCAATTGTCGGAAGCATGACTGTGGCGCAAAACAAAAAGAATCCCCGTGATATTGACATAATGCTCAAGTATTCGTTAAATGGTCAACGATGCACAGTCTCGAGGGTTCAGTGCTACAAAATGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

Methyltransf_25 PrmA

Protein Analysis

394

Amino Acids

44.16

Weight (kDa)

5.11

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PrmA	PF06325	108 - 184	2.8e-09	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_25	PF13649	114 - 187	1.3e-08	Methyltransferase domain
Methyltransf_11	PF08241	115 - 199	4.6e-07	Methyltransferase domain
PRMT_C	PF22528	216 - 380	1.4e-58	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19670 AT4G29510
fragaria_vesca	FvH4_1g06990 FvH4_1g06990 FvH4_1g06990
malus_domestica	MD02G1074300.v1.1 MD15G1203800.v1.1
prunus_persica	Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1
pyrus_communis	pycom02g05870 pycom15g18060
rosa_chinensis	RchiOBHm_Chr2g0092941
rosa_laevigata	RLG00000016351
rosa_multiflora	Rmu_sc0000965.1_g000015
rosa_roxburghii	Rroxscaffold_2G00148690
rosa_rugosa	Rorug02G0030400 Rorug02G0030500
rosa_samantha	Rh2AG076500 Rh2BG077800 Rh2CG080000 Rh2DG075100
rosa_wichuraiana	Rw2G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AatII	GACGTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	992
AciI	CCGC	6 cut(s)	30, 56, 62, 153, 392, 413
AcsI	RAATTY	2 cut(s)	366, 707
AcuI	CTGAAG	2 cut(s)	512, 834
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	689, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	52, 532, 1021
AgsI	TTSAA	4 cut(s)	268, 458, 506, 880
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	1020
AluBI	AGCT	9 cut(s)	108, 142, 356, 517, 671, 729, 741, 817, 883
AluI	AGCT	9 cut(s)	108, 142, 356, 517, 671, 729, 741, 817, 883
Alw21I	GWGCWC	3 cut(s)	110, 144, 425
Alw26I	GTCTC	3 cut(s)	103, 187, 1156
Ama87I	CYCGRG	2 cut(s)	137, 1153
AoxI	GGCC	2 cut(s)	150, 977
ApeKI	GCWGC	5 cut(s)	33, 36, 39, 59, 741
ApoI	RAATTY	2 cut(s)	366, 707
ArsI	GACNNNNNNTTYG	4 cut(s)	209, 241, 352, 384
AspLEI	GCGC	3 cut(s)	215, 1081, 1179
AspS9I	GGNCC	1 cut(s)	977
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	2 cut(s)	137, 1153
BanII	GRGCYC	3 cut(s)	110, 144, 771
BauI	CACGAG	1 cut(s)	606
Bbv12I	GWGCWC	3 cut(s)	110, 144, 425
BbvI	GCAGC	5 cut(s)	45, 46, 48, 51, 728
BccI	CCATC	5 cut(s)	194, 550, 623, 757, 955
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	1022
BcoDI	GTCTC	3 cut(s)	103, 187, 1156
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
BlsI	GCNGC	8 cut(s)	32, 35, 38, 41, 58, 61, 154, 743
Bme1390I	CCNGG	1 cut(s)	1022
BmeT110I	CYCGRG	2 cut(s)	137, 1153
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	977
BmiI	GGNNCC	2 cut(s)	174, 768
BmrFI	CCNGG	1 cut(s)	1022
BmsI	GCATC	5 cut(s)	662, 670, 753, 847, 1133
BpuEI	CTTGAG	3 cut(s)	533, 806, 1103
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 532, 1021
Bse1I	ACTGG	2 cut(s)	367, 1004
BseBI	CCWGG	1 cut(s)	1022
BseGI	GGATG	2 cut(s)	561, 685
BseLI	CCNNNNNNNGG	3 cut(s)	52, 532, 1021
BseNI	ACTGG	2 cut(s)	367, 1004
BseXI	GCAGC	5 cut(s)	45, 46, 48, 51, 728
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	2 cut(s)	152, 979
BsiHKAI	GWGCWC	3 cut(s)	110, 144, 425
BsiHKCI	CYCGRG	2 cut(s)	137, 1153
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	3 cut(s)	358, 373, 509
BslI	CCNNNNNNNGG	3 cut(s)	52, 532, 1021
BsmAI	GTCTC	3 cut(s)	103, 187, 1156
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	3 cut(s)	358, 373, 509
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	2 cut(s)	152, 979
Bso31I	GGTCTC	1 cut(s)	187
BsoBI	CYCGRG	2 cut(s)	137, 1153
Bsp1286I	GDGCHC	4 cut(s)	110, 144, 425, 771
Bsp143I	GATC	1 cut(s)	983
BspACI	CCGC	6 cut(s)	30, 56, 62, 153, 392, 413
BspANI	GGCC	2 cut(s)	152, 979
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	174, 768
BspTNI	GGTCTC	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	367, 1004
BssMI	GATC	1 cut(s)	983
BssNI	GRCGYC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	1022
Bst4CI	ACNGT	9 cut(s)	487, 595, 784, 812, 990, 1012, 1039, 1075, 1150
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	756
BstDEI	CTNAG	1 cut(s)	285
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	561, 685
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	3 cut(s)	215, 1081, 1179
BstKTI	GATC	1 cut(s)	986
BstMAI	GTCTC	3 cut(s)	103, 187, 1156
BstMBI	GATC	1 cut(s)	983
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 39, 440, 920
BstNI	CCWGG	1 cut(s)	1022
BstNSI	RCATGY	1 cut(s)	407
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	1020
BstV1I	GCAGC	5 cut(s)	45, 46, 48, 51, 728
BsuRI	GGCC	2 cut(s)	152, 979
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	561, 685
BtsIMutI	CAGTG	2 cut(s)	997, 1169
Cac8I	GCNNGC	1 cut(s)	756
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	3 cut(s)	215, 1081, 1179
Cfr13I	GGNCC	1 cut(s)	977
Csp6I	GTAC	2 cut(s)	688, 1018
CviAII	CATG	9 cut(s)	127, 254, 404, 430, 439, 736, 760, 911, 1069
CviQI	GTAC	2 cut(s)	688, 1018
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	985
DpnII	GATC	1 cut(s)	983
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Ecl136II	GAGCTC	2 cut(s)	108, 142
Eco24I	GRGCYC	3 cut(s)	110, 144, 771
Eco31I	GGTCTC	1 cut(s)	187
Eco53kI	GAGCTC	2 cut(s)	108, 142
Eco57I	CTGAAG	2 cut(s)	512, 834
Eco88I	CYCGRG	2 cut(s)	137, 1153
Eco91I	GGTNACC	1 cut(s)	71
EcoICRI	GAGCTC	2 cut(s)	108, 142
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	1020
EcoT38I	GRGCYC	3 cut(s)	110, 144, 771
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	9 cut(s)	130, 257, 407, 433, 442, 739, 763, 914, 1072
FaqI	GGGAC	3 cut(s)	358, 373, 509
FatI	CATG	9 cut(s)	126, 253, 403, 429, 438, 735, 759, 910, 1068
FauI	CCCGC	2 cut(s)	55, 385
FblI	GTMKAC	1 cut(s)	992
Fnu4HI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
FokI	GGATG	2 cut(s)	568, 692
FriOI	GRGCYC	3 cut(s)	110, 144, 771
Fsp4HI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
GlaI	GCGC	3 cut(s)	214, 1080, 1178
GluI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
GsaI	CCCAGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	152, 979
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	3 cut(s)	215, 1081, 1179
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	9 cut(s)	130, 257, 407, 433, 442, 739, 763, 914, 1072
Hin6I	GCGC	3 cut(s)	213, 1079, 1177
HinP1I	GCGC	3 cut(s)	213, 1079, 1177
HincII	GTYRAC	2 cut(s)	787, 1139
HindII	GTYRAC	2 cut(s)	787, 1139
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	6 cut(s)	66, 122, 161, 230, 1052, 1093
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	4 cut(s)	778, 787, 993, 1139
Hpy188I	TCNGA	7 cut(s)	103, 297, 312, 427, 492, 550, 1064
Hpy188III	TCNNGA	8 cut(s)	254, 344, 526, 608, 748, 823, 852, 1153
Hpy8I	GTNNAC	4 cut(s)	778, 787, 993, 1139
Hpy99I	CGWCG	3 cut(s)	83, 122, 194
HpyAV	CCTTC	3 cut(s)	196, 487, 874
HpyCH4III	ACNGT	9 cut(s)	487, 595, 784, 812, 990, 1012, 1039, 1075, 1150
HpyCH4IV	ACGT	3 cut(s)	96, 348, 895
HpyCH4V	TGCA	5 cut(s)	386, 398, 683, 744, 1146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 39, 440, 920
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	3 cut(s)	96, 348, 895
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	9 cut(s)	130, 257, 407, 433, 442, 739, 763, 914, 1072
HspAI	GCGC	3 cut(s)	213, 1079, 1177
Kzo9I	GATC	1 cut(s)	983
LmnI	GCTCC	6 cut(s)	113, 147, 172, 353, 428, 766
Lsp1109I	GCAGC	5 cut(s)	45, 46, 48, 51, 728
LweI	GCATC	5 cut(s)	662, 670, 753, 847, 1133
MaeII	ACGT	3 cut(s)	96, 348, 895
MaeIII	GTNAC	3 cut(s)	71, 802, 896
MalI	GATC	1 cut(s)	985
MboI	GATC	1 cut(s)	983
MboII	GAAGA	4 cut(s)	269, 511, 518, 1037
MfeI	CAATTG	1 cut(s)	1056
MhlI	GDGCHC	4 cut(s)	110, 144, 425, 771
MluCI	AATT	7 cut(s)	366, 480, 540, 707, 798, 956, 1056
MlyI	GAGTC	4 cut(s)	131, 155, 224, 1061
MmeI	TCCRAC	3 cut(s)	135, 450, 1042
MnlI	CCTC	7 cut(s)	86, 172, 273, 608, 670, 688, 1149
MseI	TTAA	2 cut(s)	587, 1130
MslI	CAYNNNNRTG	2 cut(s)	408, 1073
MspA1I	CMGCKG	2 cut(s)	30, 155
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	1022
MunI	CAATTG	1 cut(s)	1056
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	1022
MwoI	GCNNNNNNNGC	4 cut(s)	36, 39, 440, 920
NdeII	GATC	1 cut(s)	983
NlaIII	CATG	9 cut(s)	130, 257, 407, 433, 442, 739, 763, 914, 1072
NlaIV	GGNNCC	2 cut(s)	174, 768
NmuCI	GTSAC	2 cut(s)	71, 896
NspI	RCATGY	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	1153
PagI	TCATGA	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 84, 195
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	66, 1093
PkrI	GCNGC	8 cut(s)	32, 35, 38, 41, 58, 61, 154, 743
PleI	GAGTC	4 cut(s)	130, 155, 224, 1060
PpsI	GAGTC	4 cut(s)	130, 155, 224, 1060
Psp124BI	GAGCTC	2 cut(s)	110, 144
Psp6I	CCWGG	1 cut(s)	1020
PspEI	GGTNACC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	1020
PspN4I	GGNNCC	2 cut(s)	174, 768
PspPI	GGNCC	1 cut(s)	977
PsrI	GAACNNNNNNTAC	2 cut(s)	471, 503
RsaI	GTAC	2 cut(s)	689, 1019
RsaNI	GTAC	2 cut(s)	688, 1018
RseI	CAYNNNNRTG	2 cut(s)	408, 1073
SacI	GAGCTC	2 cut(s)	110, 144
SaqAI	TTAA	2 cut(s)	587, 1130
SatI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
Sau3AI	GATC	1 cut(s)	983
Sau96I	GGNCC	1 cut(s)	977
SchI	GAGTC	4 cut(s)	131, 155, 224, 1061
ScrFI	CCNGG	1 cut(s)	1022
SduI	GDGCHC	4 cut(s)	110, 144, 425, 771
SfaNI	GCATC	5 cut(s)	662, 670, 753, 847, 1133
Sfr274I	CTCGAG	1 cut(s)	1153
SlaI	CTCGAG	1 cut(s)	1153
SmiMI	CAYNNNNRTG	2 cut(s)	408, 1073
SmlI	CTYRAG	4 cut(s)	512, 821, 1118, 1153
SmoI	CTYRAG	4 cut(s)	512, 821, 1118, 1153
Sse9I	AATT	7 cut(s)	366, 480, 540, 707, 798, 956, 1056
SsiI	CCGC	6 cut(s)	30, 56, 62, 153, 392, 413
SstI	GAGCTC	2 cut(s)	110, 144
StyD4I	CCNGG	1 cut(s)	1020
TaaI	ACNGT	9 cut(s)	487, 595, 784, 812, 990, 1012, 1039, 1075, 1150
TaiI	ACGT	3 cut(s)	99, 351, 898
TaqI	TCGA	3 cut(s)	78, 192, 1154
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	7 cut(s)	366, 480, 540, 707, 798, 956, 1056
TatI	WGTACW	1 cut(s)	687
TauI	GCSGC	3 cut(s)	33, 59, 155
TfiI	GAWTC	2 cut(s)	66, 1093
Tru1I	TTAA	2 cut(s)	587, 1130
Tru9I	TTAA	2 cut(s)	587, 1130
TscAI	CASTG	2 cut(s)	1004, 1169
TseFI	GTSAC	2 cut(s)	71, 896
TseI	GCWGC	5 cut(s)	33, 36, 39, 59, 741
Tsp45I	GTSAC	2 cut(s)	71, 896
TspDTI	ATGAA	4 cut(s)	242, 270, 899, 927
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	2 cut(s)	1004, 1169
XapI	RAATTY	2 cut(s)	366, 707
XceI	RCATGY	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	1153
XmiI	GTMKAC	1 cut(s)	992
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.