Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008498

Physical Location & Seq

Genomic Coordinates Reverse (-)

19412271 .. 19415272

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G213600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGTCGCCGAAAGAACAACAACAACAGCAATCAGAGCTCAGCTGGCTTCAGCCACTTGCCCCAAGGCTCCAAGATTCGCTTCGCAGACAAGGAAGACGAAGACGAAGCTCTCAAAGACGCCTCCGGGAGCTCCAACCACGACGAGTCCATGTGCGACCCCGAGCTTGACAAGGCCGTTGATGACTCCATGGGCGAGCCTGACGTCTCTTTCATCGCCGCCGATGATAAGACCAGCGCCGACTATTACTTCGACTCCTACTCTCACTTCGGTATCCATGAAGAAATGTTGAAGGATGTAGTGAGGACTAAGACATATCAAAATGTTATTTATCAGAACCAGTTTCTGTTTAAGGACAAGATTGTTCTTGATGTGGGAGCTGGGACTGGAATTTTGTCCCTATTTTGTGCAAAAGCTGGTGCACAGCATGTGTATGCGGTTGAGTGCTCAGACATGGCCGACATGGCAAAAGAGATTGTTGAAGCAAACGGATTTTCTAATGTAATAACAGTTCTGAAGGGAAAGATTGAAGAACTTGAGCTTCCAGTCCCTAAAGTGGATATAATTATCTCAGAATGGATGGGATATTTTTTGTTGTTTGAGAATATGTTAAATACAGTCCTCTATGCTCGTGATAAATGGCTTGTAGACGATGGAGTTTTACTACCAGACAAAGCTTCTCTCTATTTGACAGCTATCGAGGATGCAGAGTACAAAGAAGACAAGATAGAATTTTGGAACAACGTATATGGCTTTGACATGAGCTGCATCAAGAAGCAAGCCATGATGGAGCCCCTTGTGGACACAGTTGACCAAAATCAAATTGTTACAAATAGCCAGCTACTCAAGACAATGGATATATCTAAGATGACTCCCGGAGATGCTTCCTTCACAGCACCTTTCAAGCTTGTTGCTGAACGTGATGATTTCATTCATGCTCTTGTAGCCTACTTTGATGTGTCATTTACAAAGTGCCATAAATTGATGGGCTTCTCCACAGGGCCAAGATCACGGTCTACTCATTGGAAGCAAACAGTCCTGTACTTGGAAGATGTGCTAACAGTATGTCAAGGAGAATCCATTGTCGGAAGCATGACTGTGGCGCAAAACAAAAAGAATCCCCGTGATATTGATATCATGCTCAAGTATTCATTAAATGGCCGACGATGCACGGTCTCGAGGGTTCAATATTACAAAATGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

Methyltransf_25 PrmA

Protein Analysis

402

Amino Acids

45.3

Weight (kDa)

4.96

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19670 AT4G29510
fragaria_vesca	FvH4_1g06990 FvH4_1g06990 FvH4_1g06990
malus_domestica	MD02G1074300.v1.1 MD15G1203800.v1.1
prunus_persica	Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1
pyrus_communis	pycom02g05870 pycom15g18060
rosa_chinensis	RchiOBHm_Chr2g0092941
rosa_laevigata	RLG00000016351
rosa_multiflora	Rmu_sc0000965.1_g000015
rosa_roxburghii	Rroxscaffold_2G00148690
rosa_rugosa	Rorug02G0030400 Rorug02G0030500
rosa_samantha	Rh2AG076500 Rh2BG077800 Rh2CG080000 Rh2DG075100
rosa_wichuraiana	Rw2G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
AccI	GTMKAC	2 cut(s)	648, 1016
AciI	CCGC	2 cut(s)	219, 437
AcoI	YGGCCR	2 cut(s)	456, 1159
AcsI	RAATTY	2 cut(s)	390, 731
AcuI	CTGAAG	2 cut(s)	34, 536
AcyI	GRCGYC	2 cut(s)	120, 204
AfaI	GTAC	2 cut(s)	713, 1043
AfiI	CCNNNNNNNGG	2 cut(s)	556, 1045
AgsI	TTSAA	5 cut(s)	292, 482, 530, 904, 1187
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
Alw21I	GWGCWC	4 cut(s)	41, 134, 424, 449
Alw26I	GTCTC	2 cut(s)	211, 1180
Alw44I	GTGCAC	1 cut(s)	420
AlwNI	CAGNNNCTG	1 cut(s)	346
Ama87I	CYCGRG	2 cut(s)	161, 1177
AoxI	GGCC	4 cut(s)	174, 456, 1001, 1159
ApaLI	GTGCAC	1 cut(s)	420
ApeKI	GCWGC	1 cut(s)	765
ApoI	RAATTY	2 cut(s)	390, 731
ArsI	GACNNNNNNTTYG	4 cut(s)	233, 265, 376, 408
AspLEI	GCGC	3 cut(s)	239, 1105, 1203
AspS9I	GGNCC	1 cut(s)	1001
AsuC2I	CCSGG	2 cut(s)	127, 876
AvaI	CYCGRG	2 cut(s)	161, 1177
BaeGI	GKGCMC	1 cut(s)	424
BaeI	ACNNNNGTAYC	2 cut(s)	256, 289
BanII	GRGCYC	3 cut(s)	41, 134, 795
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	3 cut(s)	102, 108, 726
Bbv12I	GWGCWC	4 cut(s)	41, 134, 424, 449
BbvI	GCAGC	1 cut(s)	752
BccI	CCATC	4 cut(s)	574, 647, 781, 979
BceAI	ACGGC	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	284
BcnI	CCSGG	2 cut(s)	127, 876
BcoDI	GTCTC	2 cut(s)	211, 1180
BfoI	RGCGCY	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	2 cut(s)	219, 766
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	2 cut(s)	220, 767
Bme1390I	CCNGG	2 cut(s)	127, 876
BmeT110I	CYCGRG	2 cut(s)	161, 1177
BmgT120I	GGNCC	1 cut(s)	1001
BmiI	GGNNCC	2 cut(s)	70, 792
BmrFI	CCNGG	2 cut(s)	127, 876
BmsI	GCATC	4 cut(s)	694, 777, 871, 1157
BpiI	GAAGAC	3 cut(s)	102, 108, 726
Bpu1102I	GCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	3 cut(s)	557, 830, 1127
BpuMI	CCSGG	2 cut(s)	127, 876
BsaHI	GRCGYC	2 cut(s)	120, 204
BsaI	GGTCTC	1 cut(s)	1180
BsaJI	CCNNGG	2 cut(s)	64, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 1045
Bse1I	ACTGG	3 cut(s)	340, 391, 545
BseDI	CCNNGG	2 cut(s)	64, 189
BseGI	GGATG	3 cut(s)	301, 585, 709
BseLI	CCNNNNNNNGG	2 cut(s)	556, 1045
BseMII	CTCAG	3 cut(s)	54, 462, 585
BseNI	ACTGG	3 cut(s)	340, 391, 545
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	752
BseYI	CCCAGC	1 cut(s)	380
BshFI	GGCC	4 cut(s)	176, 458, 1003, 1161
BsiHKAI	GWGCWC	4 cut(s)	41, 134, 424, 449
BsiHKCI	CYCGRG	2 cut(s)	161, 1177
BsiSI	CCGG	2 cut(s)	126, 876
BslFI	GGGAC	3 cut(s)	382, 397, 533
BslI	CCNNNNNNNGG	2 cut(s)	556, 1045
BsmAI	GTCTC	2 cut(s)	211, 1180
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	3 cut(s)	382, 397, 533
BsnI	GGCC	4 cut(s)	176, 458, 1003, 1161
Bso31I	GGTCTC	1 cut(s)	1180
BsoBI	CYCGRG	2 cut(s)	161, 1177
Bsp1286I	GDGCHC	5 cut(s)	41, 134, 424, 449, 795
Bsp143I	GATC	1 cut(s)	1007
Bsp1720I	GCTNAGC	1 cut(s)	40
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	2 cut(s)	219, 437
BspANI	GGCC	4 cut(s)	176, 458, 1003, 1161
BspCNI	CTCAG	3 cut(s)	53, 461, 584
BspLI	GGNNCC	2 cut(s)	70, 792
BspTNI	GGTCTC	1 cut(s)	1180
BsrI	ACTGG	3 cut(s)	340, 391, 545
BssECI	CCNNGG	2 cut(s)	64, 189
BssMI	GATC	1 cut(s)	1007
BssNI	GRCGYC	2 cut(s)	120, 204
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	64, 189
Bst2BI	CACGAG	1 cut(s)	630
Bst4CI	ACNGT	8 cut(s)	511, 619, 808, 1014, 1036, 1063, 1099, 1174
BstACI	GRCGYC	2 cut(s)	120, 204
BstC8I	GCNNGC	4 cut(s)	46, 197, 780, 839
BstDEI	CTNAG	5 cut(s)	40, 309, 448, 571, 864
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	301, 585, 709
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	3 cut(s)	239, 1105, 1203
BstKTI	GATC	1 cut(s)	1010
BstMAI	GTCTC	2 cut(s)	211, 1180
BstMBI	GATC	1 cut(s)	1007
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 45, 464, 944, 1167
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	125, 874
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	752
BstV2I	GAAGAC	3 cut(s)	102, 108, 726
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	4 cut(s)	176, 458, 1003, 1161
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	301, 585, 709
Cac8I	GCNNGC	4 cut(s)	46, 197, 780, 839
CaiI	CAGNNNCTG	1 cut(s)	346
CfoI	GCGC	3 cut(s)	239, 1105, 1203
Cfr13I	GGNCC	1 cut(s)	1001
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	712, 1042
CviQI	GTAC	2 cut(s)	712, 1042
DdeI	CTNAG	5 cut(s)	40, 309, 448, 571, 864
DpnI	GATC	1 cut(s)	1009
DpnII	GATC	1 cut(s)	1007
EaeI	YGGCCR	2 cut(s)	456, 1159
Ecl136II	GAGCTC	2 cut(s)	39, 132
Eco130I	CCWWGG	2 cut(s)	64, 189
Eco24I	GRGCYC	3 cut(s)	41, 134, 795
Eco31I	GGTCTC	1 cut(s)	1180
Eco32I	GATATC	1 cut(s)	1135
Eco53kI	GAGCTC	2 cut(s)	39, 132
Eco57I	CTGAAG	2 cut(s)	34, 536
Eco88I	CYCGRG	2 cut(s)	161, 1177
EcoICRI	GAGCTC	2 cut(s)	39, 132
EcoRV	GATATC	1 cut(s)	1135
EcoT14I	CCWWGG	2 cut(s)	64, 189
EcoT38I	GRGCYC	3 cut(s)	41, 134, 795
ErhI	CCWWGG	2 cut(s)	64, 189
Esp3I	CGTCTC	1 cut(s)	211
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	3 cut(s)	382, 397, 533
FblI	GTMKAC	2 cut(s)	648, 1016
Fnu4HI	GCNGC	2 cut(s)	219, 766
FokI	GGATG	3 cut(s)	308, 592, 716
FriOI	GRGCYC	3 cut(s)	41, 134, 795
Fsp4HI	GCNGC	2 cut(s)	219, 766
GlaI	GCGC	3 cut(s)	238, 1104, 1202
GluI	GCNGC	2 cut(s)	219, 766
GsaI	CCCAGC	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	4 cut(s)	176, 458, 1003, 1161
HapII	CCGG	2 cut(s)	126, 876
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	3 cut(s)	239, 1105, 1203
Hin1I	GRCGYC	2 cut(s)	120, 204
Hin6I	GCGC	3 cut(s)	237, 1103, 1201
HinP1I	GCGC	3 cut(s)	237, 1103, 1201
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	2 cut(s)	675, 905
HinfI	GANTC	7 cut(s)	76, 146, 185, 254, 871, 1076, 1117
HpaII	CCGG	2 cut(s)	126, 876
Hpy166II	GTNNAC	5 cut(s)	422, 649, 802, 811, 1017
Hpy188I	TCNGA	6 cut(s)	36, 336, 451, 516, 574, 1088
Hpy188III	TCNNGA	5 cut(s)	368, 632, 772, 847, 1177
Hpy8I	GTNNAC	5 cut(s)	422, 649, 802, 811, 1017
Hpy99I	CGWCG	2 cut(s)	146, 1167
HpyAV	CCTTC	3 cut(s)	286, 511, 898
HpyCH4III	ACNGT	8 cut(s)	511, 619, 808, 1014, 1036, 1063, 1099, 1174
HpyCH4IV	ACGT	3 cut(s)	204, 744, 919
HpyCH4V	TGCA	5 cut(s)	410, 422, 707, 768, 1170
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 45, 464, 944, 1167
HpyF3I	CTNAG	5 cut(s)	40, 309, 448, 571, 864
HpySE526I	ACGT	3 cut(s)	204, 744, 919
Hsp92I	GRCGYC	2 cut(s)	120, 204
HspAI	GCGC	3 cut(s)	237, 1103, 1201
Kzo9I	GATC	1 cut(s)	1007
LmnI	GCTCC	5 cut(s)	74, 129, 137, 377, 790
Lsp1109I	GCAGC	1 cut(s)	752
LweI	GCATC	4 cut(s)	694, 777, 871, 1157
MaeII	ACGT	3 cut(s)	204, 744, 919
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	1 cut(s)	1009
MboI	GATC	1 cut(s)	1007
MboII	GAAGA	6 cut(s)	107, 113, 293, 542, 731, 1061
MhlI	GDGCHC	5 cut(s)	41, 134, 424, 449, 795
MluCI	AATT	5 cut(s)	390, 564, 731, 822, 980
MlyI	GAGTC	4 cut(s)	155, 179, 248, 865
MmeI	TCCRAC	2 cut(s)	159, 1066
MnlI	CCTC	5 cut(s)	133, 297, 632, 694, 1173
MseI	TTAA	3 cut(s)	351, 611, 1154
MslI	CAYNNNNRTG	2 cut(s)	432, 1097
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	126, 876
MspR9I	CCNGG	2 cut(s)	127, 876
MwoI	GCNNNNNNNGC	5 cut(s)	36, 45, 464, 944, 1167
NciI	CCSGG	2 cut(s)	127, 876
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	1007
NlaIV	GGNNCC	2 cut(s)	70, 792
NspI	RCATGY	1 cut(s)	431
PaeR7I	CTCGAG	1 cut(s)	1177
PfeI	GAWTC	3 cut(s)	76, 1076, 1117
PfoI	TCCNGGA	2 cut(s)	125, 874
PkrI	GCNGC	2 cut(s)	220, 767
PleI	GAGTC	4 cut(s)	154, 179, 248, 865
PpsI	GAGTC	4 cut(s)	154, 179, 248, 865
Psp124BI	GAGCTC	2 cut(s)	41, 134
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	70, 792
PspPI	GGNCC	1 cut(s)	1001
PsrI	GAACNNNNNNTAC	2 cut(s)	495, 527
PstNI	CAGNNNCTG	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	713, 1043
RsaNI	GTAC	2 cut(s)	712, 1042
RseI	CAYNNNNRTG	2 cut(s)	432, 1097
SacI	GAGCTC	2 cut(s)	41, 134
SaqAI	TTAA	3 cut(s)	351, 611, 1154
SatI	GCNGC	2 cut(s)	219, 766
Sau3AI	GATC	1 cut(s)	1007
Sau96I	GGNCC	1 cut(s)	1001
SchI	GAGTC	4 cut(s)	155, 179, 248, 865
ScrFI	CCNGG	2 cut(s)	127, 876
SduI	GDGCHC	5 cut(s)	41, 134, 424, 449, 795
SfaNI	GCATC	4 cut(s)	694, 777, 871, 1157
Sfr274I	CTCGAG	1 cut(s)	1177
SlaI	CTCGAG	1 cut(s)	1177
SmiMI	CAYNNNNRTG	2 cut(s)	432, 1097
SmlI	CTYRAG	4 cut(s)	536, 845, 1142, 1177
SmoI	CTYRAG	4 cut(s)	536, 845, 1142, 1177
Sse9I	AATT	5 cut(s)	390, 564, 731, 822, 980
SsiI	CCGC	2 cut(s)	219, 437
SspI	AATATT	1 cut(s)	1190
SstI	GAGCTC	2 cut(s)	41, 134
StyD4I	CCNGG	2 cut(s)	125, 874
StyI	CCWWGG	2 cut(s)	64, 189
TaaI	ACNGT	8 cut(s)	511, 619, 808, 1014, 1036, 1063, 1099, 1174
TaiI	ACGT	3 cut(s)	207, 747, 922
TaqI	TCGA	3 cut(s)	252, 699, 1178
TasI	AATT	5 cut(s)	390, 564, 731, 822, 980
TatI	WGTACW	2 cut(s)	711, 1041
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	3 cut(s)	76, 1076, 1117
Tru1I	TTAA	3 cut(s)	351, 611, 1154
Tru9I	TTAA	3 cut(s)	351, 611, 1154
TseI	GCWGC	1 cut(s)	765
TspDTI	ATGAA	5 cut(s)	202, 294, 919, 923, 1140
TspGWI	ACGGA	1 cut(s)	504
VneI	GTGCAC	1 cut(s)	420
XapI	RAATTY	2 cut(s)	390, 731
XceI	RCATGY	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	1177
XmiI	GTMKAC	2 cut(s)	648, 1016
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.