Rroxscaffold_2G00148690
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
86276070 .. 86279204
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00148690.1

Sequence Viewer

Length: 1200 bp
ATGGGTCGCCGAAAGAACCAAAGCACCAAGACCACCAATTCGAGCTCGACGGACTTGGCCCAAGGCTCGGCGACTCCTGGGTTCGAAGACGAAGTGGGTTTCATAGACCACGACGAGTCCATGTCCATGTGCGACCCCGATCTCGACAAAGCCGTCGACGACTCCATGGGCGAGCCCGAGGTCTCCTTCGCCGACGTCAATGACAAAACCAGCGCCGACTATTACTTCGACTCCTATTCTCACTTCGATGTTGTGCTGACTATCTTTTTGTTGCAGGAGATGTTGAAGGATCTAGTGAGAACCAAGACATATCAAAATGTTATTTATCAGAATAAGTTTCTATTCAAGGACAAAGTTGTTCTTGATGTCGGAGCTGGGACTGGAATTTTGTCCCTATTCTGTGCAAAAGCTGGTGCCAAGCATGTTTATGCAGTTGAGTGCTCAGATATGGCTGAGAGGGCAAAAGAGATTGTTGAAACTAACGGGTTTTCTAATGTTGTAACCGTTCTGAAGGGAAAGATTGAAGAACTTGAGCTTCCAGTTGCTAAAGTGGATATAATTATTTCTGAGTGGATGGGATACTTTTTGTTGTTTGAGAACATGTTGAATACAGTCCTCTATGCTCGTGATAAATGGCTTGTAGATGATGGAATTTTGCTACCGGACAAATGTTCTCTCTTTCTGACAGCTATTGAGGATGCAGAGTACAAAGAAGATAAGATAGAATTTTGGAATAATGTATATGGCTTTGACATGAGCTGCATCAAGAAGCAAGCCATGATGGAGCCTCTTGTGGACACGGTTGACCAAAACCAAATTGTTACTAATAGCCAGCTACTCAAGACAATGGATATATCTAAGATGACTCCTGGAGATGCTTCCTTCACAGCTCCTTTTAAGCTTATTGCTGAACGTGATGATTTCATTCATGCTCTTGTAGCCTACTTTGACGTGTCATTTACAAAATGTCATAAATTGATGGGCTTCTCCACAGGGCCAAGATCGCGATCTACACATTGGAAACAAACAGTCCTGTACTTGGAAGACGTGCTGACAGTATGCCAAGGAGAGTCGATTGTTGGAACCATGACTGTGGCACAAAACAAAAAGAATCCCCGTGATATTGATATAATGCTCAAGTATTCATTGAACGGTCAGCGATGCACAGTCTCAAGGGTTCAACATTACAAGATGCGCTAA

Protein Analysis

399

Amino Acids

45.13

Weight (kDa)

4.95

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 114 - 190 2.9e-09 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 116 - 190 3.1e-08 Methyltransferase domain
Methyltransf_25 PF13649 120 - 193 8.4e-10 Methyltransferase domain
Methyltransf_11 PF08241 121 - 205 4.3e-08 Methyltransferase domain
PRMT_C PF22528 222 - 386 4.6e-59 Arginine methyltransferase oligomerization subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AatII GACGTC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 413
AccI GTMKAC 1 cut(s) 156
AccII CGCG 1 cut(s) 1006
AclWI GGATC 1 cut(s) 297
AcsI RAATTY 3 cut(s) 384, 651, 725
AcuI CTGAAG 1 cut(s) 530
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 2 cut(s) 707, 1037
AfiI CCNNNNNNNGG 2 cut(s) 67, 1039
AflIII ACRYGT 2 cut(s) 600, 951
AgsI TTSAA 7 cut(s) 286, 346, 476, 524, 607, 1150, 1181
AjiI CACGTC 2 cut(s) 952, 1048
AjnI CCWGG 2 cut(s) 76, 868
AluBI AGCT 9 cut(s) 45, 374, 410, 535, 689, 759, 835, 890, 901
AluI AGCT 9 cut(s) 45, 374, 410, 535, 689, 759, 835, 890, 901
Alw21I GWGCWC 2 cut(s) 47, 443
Alw26I GTCTC 2 cut(s) 187, 1174
AlwI GGATC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 2 cut(s) 57, 995
ApeKI GCWGC 1 cut(s) 759
ApoI RAATTY 3 cut(s) 384, 651, 725
ArsI GACNNNNNNTTYG 8 cut(s) 22, 54, 209, 241, 250, 282, 370, 402
AspLEI GCGC 2 cut(s) 215, 1197
AspS9I GGNCC 2 cut(s) 58, 995
AsuII TTCGAA 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 176
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 2 cut(s) 47, 177
BauI CACGAG 1 cut(s) 624
BbsI GAAGAC 2 cut(s) 93, 1050
Bbv12I GWGCWC 2 cut(s) 47, 443
BbvI GCAGC 1 cut(s) 746
BccI CCATC 4 cut(s) 568, 641, 775, 973
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 78, 870
BciVI GTATCC 1 cut(s) 572
BcoDI GTCTC 2 cut(s) 187, 1174
BfaI CTAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 216
BfuI GTATCC 1 cut(s) 572
BisI GCNGC 1 cut(s) 760
BlsI GCNGC 1 cut(s) 761
Bme1390I CCNGG 2 cut(s) 78, 870
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 2 cut(s) 952, 1048
BmgT120I GGNCC 2 cut(s) 58, 995
BmiI GGNNCC 3 cut(s) 415, 786, 1084
BmrFI CCNGG 2 cut(s) 78, 870
BmsI GCATC 5 cut(s) 688, 771, 865, 1151, 1182
BpiI GAAGAC 2 cut(s) 93, 1050
BpmI CTGGAG 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 84
BpuEI CTTGAG 4 cut(s) 551, 824, 1121, 1156
BsaBI GATNNNNATC 1 cut(s) 1006
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 5 cut(s) 61, 77, 165, 177, 1063
BsaWI WCCGGW 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 1039
Bse1I ACTGG 2 cut(s) 385, 539
Bse8I GATNNNNATC 1 cut(s) 1006
BseBI CCWGG 2 cut(s) 78, 870
BseDI CCNNGG 5 cut(s) 61, 77, 165, 177, 1063
BseGI GGATG 2 cut(s) 579, 703
BseJI GATNNNNATC 1 cut(s) 1006
BseLI CCNNNNNNNGG 2 cut(s) 67, 1039
BseMII CTCAG 3 cut(s) 444, 456, 558
BseNI ACTGG 2 cut(s) 385, 539
BseXI GCAGC 1 cut(s) 746
BseYI CCCAGC 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 1006
BshFI GGCC 2 cut(s) 59, 997
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 2 cut(s) 47, 443
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 2 cut(s) 376, 391
BslI CCNNNNNNNGG 2 cut(s) 67, 1039
BsmAI GTCTC 2 cut(s) 187, 1174
BsmFI GGGAC 2 cut(s) 376, 391
BsnI GGCC 2 cut(s) 59, 997
Bso31I GGTCTC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 3 cut(s) 47, 177, 443
Bsp143I GATC 4 cut(s) 139, 289, 1001, 1007
Bsp19I CCATGG 1 cut(s) 165
Bsp68I TCGCGA 1 cut(s) 1006
BspANI GGCC 2 cut(s) 59, 997
BspCNI CTCAG 3 cut(s) 445, 455, 559
BspFNI CGCG 1 cut(s) 1006
BspLI GGNNCC 3 cut(s) 415, 786, 1084
BspPI GGATC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 2 cut(s) 385, 539
BssECI CCNNGG 5 cut(s) 61, 77, 165, 177, 1063
BssMI GATC 4 cut(s) 139, 289, 1001, 1007
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 624
BssT1I CCWWGG 3 cut(s) 61, 165, 1063
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 2 cut(s) 78, 870
Bst4CI ACNGT 8 cut(s) 505, 613, 802, 1030, 1057, 1093, 1154, 1168
BstACI GRCGYC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 173, 774, 833
BstDEI CTNAG 4 cut(s) 442, 453, 567, 858
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 579, 703
BstFNI CGCG 1 cut(s) 1006
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 1197
BstKTI GATC 4 cut(s) 142, 292, 1004, 1010
BstMAI GTCTC 2 cut(s) 187, 1174
BstMBI GATC 4 cut(s) 139, 289, 1001, 1007
BstMWI GCNNNNNNNGC 3 cut(s) 458, 938, 1003
BstNI CCWGG 2 cut(s) 78, 870
BstNSI RCATGY 2 cut(s) 425, 604
BstSCI CCNGG 2 cut(s) 76, 868
BstUI CGCG 1 cut(s) 1006
BstV1I GCAGC 1 cut(s) 746
BstV2I GAAGAC 2 cut(s) 93, 1050
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 1093
BstYI RGATCY 1 cut(s) 289
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 2 cut(s) 59, 997
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 1174
BtrI CACGTC 2 cut(s) 952, 1048
BtsCI GGATG 2 cut(s) 579, 703
BtuMI TCGCGA 1 cut(s) 1006
Cac8I GCNNGC 3 cut(s) 173, 774, 833
CfoI GCGC 2 cut(s) 215, 1197
Cfr13I GGNCC 2 cut(s) 58, 995
Csp6I GTAC 2 cut(s) 706, 1036
CviAII CATG 9 cut(s) 121, 127, 166, 422, 601, 754, 778, 929, 1087
CviQI GTAC 2 cut(s) 706, 1036
DdeI CTNAG 4 cut(s) 442, 453, 567, 858
DpnI GATC 4 cut(s) 141, 291, 1003, 1009
DpnII GATC 4 cut(s) 139, 289, 1001, 1007
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 3 cut(s) 61, 165, 1063
Eco24I GRGCYC 2 cut(s) 47, 177
Eco31I GGTCTC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 76, 868
EcoT14I CCWWGG 3 cut(s) 61, 165, 1063
EcoT38I GRGCYC 2 cut(s) 47, 177
ErhI CCWWGG 3 cut(s) 61, 165, 1063
FaeI CATG 9 cut(s) 124, 130, 169, 425, 604, 757, 781, 932, 1090
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 2 cut(s) 376, 391
FatI CATG 9 cut(s) 120, 126, 165, 421, 600, 753, 777, 928, 1086
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 760
FokI GGATG 2 cut(s) 586, 710
FriOI GRGCYC 2 cut(s) 47, 177
Fsp4HI GCNGC 1 cut(s) 760
FspBI CTAG 1 cut(s) 293
GlaI GCGC 2 cut(s) 214, 1196
GluI GCNGC 1 cut(s) 760
GsaI CCCAGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 891
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 59, 997
HapII CCGG 1 cut(s) 662
HhaI GCGC 2 cut(s) 215, 1197
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 9 cut(s) 124, 130, 169, 425, 604, 757, 781, 932, 1090
Hin6I GCGC 2 cut(s) 213, 1195
HinP1I GCGC 2 cut(s) 213, 1195
HincII GTYRAC 2 cut(s) 157, 805
HindII GTYRAC 2 cut(s) 157, 805
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 7 cut(s) 73, 116, 161, 230, 865, 1070, 1111
HpaII CCGG 1 cut(s) 662
Hpy166II GTNNAC 3 cut(s) 157, 796, 805
Hpy188I TCNGA 6 cut(s) 330, 371, 445, 510, 568, 684
Hpy188III TCNNGA 6 cut(s) 143, 362, 626, 766, 841, 1005
Hpy8I GTNNAC 3 cut(s) 157, 796, 805
Hpy99I CGWCG 5 cut(s) 52, 116, 158, 161, 197
HpyAV CCTTC 4 cut(s) 196, 280, 505, 892
HpyCH4III ACNGT 8 cut(s) 505, 613, 802, 1030, 1057, 1093, 1154, 1168
HpyCH4IV ACGT 4 cut(s) 195, 913, 951, 1047
HpyCH4V TGCA 6 cut(s) 274, 404, 431, 701, 762, 1164
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 938, 1003
HpyF3I CTNAG 4 cut(s) 442, 453, 567, 858
HpySE526I ACGT 4 cut(s) 195, 913, 951, 1047
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 9 cut(s) 124, 130, 169, 425, 604, 757, 781, 932, 1090
HspAI GCGC 2 cut(s) 213, 1195
Kzo9I GATC 4 cut(s) 139, 289, 1001, 1007
LmnI GCTCC 3 cut(s) 371, 784, 895
Lsp1109I GCAGC 1 cut(s) 746
LweI GCATC 5 cut(s) 688, 771, 865, 1151, 1182
MaeI CTAG 1 cut(s) 293
MaeII ACGT 4 cut(s) 195, 913, 951, 1047
MaeIII GTNAC 2 cut(s) 499, 820
MalI GATC 4 cut(s) 141, 291, 1003, 1009
MboI GATC 4 cut(s) 139, 289, 1001, 1007
MboII GAAGA 4 cut(s) 98, 536, 725, 1055
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 3 cut(s) 47, 177, 443
MluCI AATT 7 cut(s) 37, 384, 558, 651, 725, 816, 974
MlyI GAGTC 6 cut(s) 67, 125, 155, 224, 859, 1079
MmeI TCCRAC 2 cut(s) 349, 1060
MnlI CCTC 5 cut(s) 172, 450, 626, 688, 798
MseI TTAA 1 cut(s) 897
MslI CAYNNNNRTG 4 cut(s) 125, 246, 426, 1091
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 2 cut(s) 78, 870
MvaI CCWGG 2 cut(s) 78, 870
MvnI CGCG 1 cut(s) 1006
MwoI GCNNNNNNNGC 3 cut(s) 458, 938, 1003
NcoI CCATGG 1 cut(s) 165
NdeII GATC 4 cut(s) 139, 289, 1001, 1007
NlaIII CATG 9 cut(s) 124, 130, 169, 425, 604, 757, 781, 932, 1090
NlaIV GGNNCC 3 cut(s) 415, 786, 1084
NmeAIII GCCGAG 1 cut(s) 47
NruI TCGCGA 1 cut(s) 1006
NspI RCATGY 2 cut(s) 425, 604
NspV TTCGAA 1 cut(s) 84
PciI ACATGT 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 1111
PfoI TCCNGGA 1 cut(s) 868
PkrI GCNGC 1 cut(s) 761
PleI GAGTC 6 cut(s) 67, 124, 155, 224, 859, 1078
PpsI GAGTC 6 cut(s) 67, 124, 155, 224, 859, 1078
PscI ACATGT 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 76, 868
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 2 cut(s) 76, 868
PspN4I GGNNCC 3 cut(s) 415, 786, 1084
PspPI GGNCC 2 cut(s) 58, 995
PsuI RGATCY 1 cut(s) 289
RruI TCGCGA 1 cut(s) 1006
RsaI GTAC 2 cut(s) 707, 1037
RsaNI GTAC 2 cut(s) 706, 1036
RseI CAYNNNNRTG 4 cut(s) 125, 246, 426, 1091
SacI GAGCTC 1 cut(s) 47
SalI GTCGAC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 897
SatI GCNGC 1 cut(s) 760
Sau3AI GATC 4 cut(s) 139, 289, 1001, 1007
Sau96I GGNCC 2 cut(s) 58, 995
SchI GAGTC 6 cut(s) 67, 125, 155, 224, 859, 1079
ScrFI CCNGG 2 cut(s) 78, 870
SduI GDGCHC 3 cut(s) 47, 177, 443
SfaNI GCATC 5 cut(s) 688, 771, 865, 1151, 1182
SfuI TTCGAA 1 cut(s) 84
SgrDI CGTCGACG 1 cut(s) 155
SmiMI CAYNNNNRTG 4 cut(s) 125, 246, 426, 1091
SmlI CTYRAG 4 cut(s) 530, 839, 1136, 1171
SmoI CTYRAG 4 cut(s) 530, 839, 1136, 1171
Sse9I AATT 7 cut(s) 37, 384, 558, 651, 725, 816, 974
SspMI CTAG 1 cut(s) 293
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 76, 868
StyI CCWWGG 3 cut(s) 61, 165, 1063
TaaI ACNGT 8 cut(s) 505, 613, 802, 1030, 1057, 1093, 1154, 1168
TaiI ACGT 4 cut(s) 198, 916, 954, 1050
TaqI TCGA 8 cut(s) 41, 47, 84, 144, 156, 228, 246, 1073
TasI AATT 7 cut(s) 37, 384, 558, 651, 725, 816, 974
TatI WGTACW 2 cut(s) 705, 1035
TfiI GAWTC 1 cut(s) 1111
Tru1I TTAA 1 cut(s) 897
Tru9I TTAA 1 cut(s) 897
TseI GCWGC 1 cut(s) 759
TspDTI ATGAA 4 cut(s) 91, 913, 917, 1134
TspGWI ACGGA 1 cut(s) 65
XapI RAATTY 3 cut(s) 384, 651, 725
XceI RCATGY 2 cut(s) 425, 604
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 1 cut(s) 293
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.